Update jupyter for hpc authored by Jens Henrik Goebbert's avatar Jens Henrik Goebbert
...@@ -65,11 +65,11 @@ The installed kernels might not suite your needs and you want to switch to a dif ...@@ -65,11 +65,11 @@ The installed kernels might not suite your needs and you want to switch to a dif
In that case you need to set up your own specialized Jupyter kernel (located in ''${HOME}/.local/share/jupyter/kernels/''). In that case you need to set up your own specialized Jupyter kernel (located in ''${HOME}/.local/share/jupyter/kernels/'').
This can be done in the terminal in a few steps on the supercomputer: This can be done in the terminal in a few steps on the supercomputer:
1. LOAD the modules you need 1. LOAD the modules you need
* start with ''module --force purge'' to remove any module which is already loaded * start with ''module purge'' to remove any module which is already loaded
* ensure this includes a recent Python 3.x (even if you are not planing to use Python) * ensure this includes a recent Python 3.x (even if you are not planing to use Python)
* example: * example:
```shell ```shell
module --force purge module purge
module use /usr/local/software/jureca/OtherStages module use /usr/local/software/jureca/OtherStages
module load Stages/Devel-2018a module load Stages/Devel-2018a
module load GCCcore/.5.5.0 module load GCCcore/.5.5.0
...@@ -123,7 +123,7 @@ Now, modify this basic jupyter kernel to suite your needs. ...@@ -123,7 +123,7 @@ Now, modify this basic jupyter kernel to suite your needs.
```shell ```shell
#!/usr/bin/env bash #!/usr/bin/env bash
module --force purge module purge
module load Stages/Devel-2018a module load Stages/Devel-2018a
module load GCCcore/.5.5.0 module load GCCcore/.5.5.0
module load Jupyter module load Jupyter
... ...
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