diff --git a/Golden_Repo/j/JupyterProxy-Matlab/JupyterProxy-Matlab-0.8.0-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterProxy-Matlab/JupyterProxy-Matlab-0.8.0-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..42bf444d38bdbceecb5d0822f29084c2b4b3ed1b
--- /dev/null
+++ b/Golden_Repo/j/JupyterProxy-Matlab/JupyterProxy-Matlab-0.8.0-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,135 @@
+easyblock = 'PythonBundle'
+
+name = 'JupyterProxy-Matlab'
+version = '0.8.0'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+# only users of the UNIX-group 'matlab' must have access
+# group = 'matlab'
+
+homepage = 'https://github.com/mathworks/jupyter-matlab-proxy'
+description = """The MATLAB integration for Jupyter enables you to open a MATLAB desktop
+in a web browser tab, directly from your Jupyter environment.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+ # check for existance
+ # ('MATLAB', '2023a'),
+ # ('XServer', '21.1.6'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+]
+
+exts_defaultclass = 'PythonPackage'
+exts_default_options = {
+ 'filter': ('python -c "import %(ext_name)s"', ''),
+ 'download_dep_fail': True,
+ 'source_urls': [PYPI_SOURCE],
+ 'use_pip': True,
+ 'sanity_pip_check': True,
+ 'use_pip_for_deps': False,
+}
+
+exts_list = [
+ # enable classic jupyter ####
+ ('jupyter_contrib_core', '0.4.2', {
+ 'checksums': [('sha256', '1887212f3ca9d4487d624c0705c20dfdf03d5a0b9ea2557d3aaeeb4c38bdcabb')],
+ }),
+ ('jupyter_highlight_selected_word', '0.2.0', {
+ 'checksums': [('sha256', '9fa740424859a807950ca08d2bfd28a35154cd32dd6d50ac4e0950022adc0e7b')],
+ }),
+ ('jupyter_nbextensions_configurator', '0.6.1', {
+ 'checksums': [('sha256', '4b9e1270ccc1f8e0a421efb8979a737f586813023a4855b9453f61c3ca599b82')],
+ }),
+ ('jupyter_contrib_nbextensions', '0.7.0', {
+ 'checksums': [('sha256', '06e33f005885eb92f89cbe82711e921278201298d08ab0d886d1ba09e8c3e9ca')],
+ }),
+ # core-packages ####
+ ('aiohttp-session', '2.12.0', {
+ 'checksums': [('sha256', '0ccd11a7c77cb9e5a61f4daacdc9170d561112f9cfaf9e9a2d9867c0587d1950')],
+ }),
+ ('matlab-proxy', '0.8.0', {
+ 'patches': [
+ 'noVersionCheck.patch',
+ ],
+ 'checksums': [
+ ('sha256', '965b0b7cfa6314638435089f211106c114b838e8f4945cb5f5dacb15c0cdf71f'),
+ ('sha256', 'c21ba8969da77c88a266c97dc73dc64dc7a8f4fc20391f311bb4a6992d6e812c'),
+ ],
+ }),
+ ('jupyter-matlab-proxy', '0.8.0', {
+ 'source_urls': ['https://github.com/mathworks/jupyter-matlab-proxy/archive/'],
+ 'source_tmpl': 'v%(version)s.tar.gz',
+ 'patches': [
+ 'timeout.patch',
+ ],
+ 'checksums': [
+ ('sha256', 'b1785c8bed32d187c2fa15d921d047dd7483ec20442cdc5f34c0aad1ca06bac5'),
+ ('sha256', 'f44b7eee2d73b492a885c6b051b755330ff973e083d341933d28172156f0ff16'),
+ ],
+ }),
+]
+
+postinstallcmds = [
+ (
+ '{ cat > %(installdir)s/bin/matlab; } << EOF \n'
+ '#!/bin/bash \n'
+ '\n'
+ '# Load required modules \n'
+ 'module purge \n'
+ 'module load Stages/${STAGE} \n'
+ 'module load GCCcore/.11.3.0 \n'
+ 'module load MATLAB \n'
+ 'module load XServer/21.1.6 \n'
+ '\n'
+ 'matlab "\$@" \n'
+ '\n'
+ 'EOF'
+ ),
+ 'chmod +x %(installdir)s/bin/matlab',
+ (
+ '{ cat > %(installdir)s/bin/Xvfb; } << EOF \n'
+ '#!/bin/bash \n'
+ '\n'
+ '# Load required modules \n'
+ '# and ensure stderr stays empty as matlab-proxy seems to fail if not \n'
+ 'module purge 2>&1 \n'
+ 'module load Stages/${STAGE} 2>&1 \n'
+ 'module load GCCcore/.11.3.0 2>&1 \n'
+ 'module load MATLAB 2>&1 \n'
+ 'module load XServer/21.1.6 2>&1 \n'
+ '\n'
+ 'Xvfb "\$@" 2>&1\n'
+ '\n'
+ 'EOF'
+ ),
+ 'chmod +x %(installdir)s/bin/Xvfb'
+]
+
+# Jupyter-matlab-kernel DISABLED:
+# https://github.com/mathworks/jupyter-matlab-proxy/issues/62
+modextrapaths = {
+ 'MWI_USE_EXISTING_LICENSE': 'True',
+ # 'MWI_CUSTOM_MATLAB_ROOT': 'lib/python%(pyshortver)s/site-packages/jupyter_matlab_proxy/',
+ # 'JUPYTER_PATH': ['share/jupyter'], # add search path for kernelspecs
+}
+
+# Ensure that the user-specific $HOME/.local/share/jupyter is first entry in JUPYTHER_PATH
+# modluafooter = """
+# prepend_path("JUPYTER_PATH", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+# """
+
+sanity_check_paths = {
+ 'files': [],
+ 'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterProxy-Matlab/noVersionCheck.patch b/Golden_Repo/j/JupyterProxy-Matlab/noVersionCheck.patch
new file mode 100644
index 0000000000000000000000000000000000000000..baccdaa140e5e2ea42d7ed11a00da5014f49246e
--- /dev/null
+++ b/Golden_Repo/j/JupyterProxy-Matlab/noVersionCheck.patch
@@ -0,0 +1,41 @@
+diff -Naur 0.7.1.orig/GCCcore-11.3.0-2023.3.6/matlabproxy/matlab-proxy-0.7.4/matlab_proxy/settings.py 0.7.1/GCCcore-11.3.0-2023.3.6/matlabproxy/matlab-proxy-0.7.4/matlab_proxy/settings.py
+--- 0.7.1.orig/GCCcore-11.3.0-2023.3.6/matlabproxy/matlab-proxy-0.7.4/matlab_proxy/settings.py 2023-08-24 13:52:26.000000000 +0200
++++ 0.7.1/GCCcore-11.3.0-2023.3.6/matlabproxy/matlab-proxy-0.7.4/matlab_proxy/settings.py 2023-08-27 22:54:27.491557356 +0200
+@@ -37,10 +37,10 @@
+ if custom_matlab_root_path:
+ matlab_root_path = Path(custom_matlab_root_path)
+
+- # Terminate process if invalid Custom Path was provided!
+- mwi.validators.terminate_on_invalid_matlab_root_path(
+- matlab_root_path, is_custom_matlab_root=True
+- )
++ ## Terminate process if invalid Custom Path was provided!
++ #mwi.validators.terminate_on_invalid_matlab_root_path(
++ # matlab_root_path, is_custom_matlab_root=True
++ #)
+
+ # Generate executable path from root path
+ matlab_executable_path = matlab_root_path / "bin" / "matlab"
+@@ -57,9 +57,9 @@
+
+ if matlab_executable_path:
+ matlab_root_path = Path(matlab_executable_path).resolve().parent.parent
+- mwi.validators.terminate_on_invalid_matlab_root_path(
+- matlab_root_path, is_custom_matlab_root=False
+- )
++ #mwi.validators.terminate_on_invalid_matlab_root_path(
++ # matlab_root_path, is_custom_matlab_root=False
++ #)
+ logger.info(
+ f"Found MATLAB Executable: {matlab_executable_path} with Root: {matlab_root_path}"
+ )
+@@ -87,6 +87,9 @@
+ return None
+
+ version_info_file_path = Path(matlab_root_path) / VERSION_INFO_FILE_NAME
++ if not os.path.exists(version_info_file_path):
++ return None
++
+ tree = ET.parse(version_info_file_path)
+ root = tree.getroot()
+
diff --git a/Golden_Repo/j/JupyterProxy-Matlab/timeout.patch b/Golden_Repo/j/JupyterProxy-Matlab/timeout.patch
new file mode 100644
index 0000000000000000000000000000000000000000..11a1e821789ab3712ee650566bd4a2b27a90a3a8
--- /dev/null
+++ b/Golden_Repo/j/JupyterProxy-Matlab/timeout.patch
@@ -0,0 +1,12 @@
+diff -Naur 0.7.1.orig/GCCcore-11.3.0-2023.3.6/jupytermatlabproxy/jupyter-matlab-proxy-0.7.1/src/jupyter_matlab_proxy/__init__.py 0.7.1/GCCcore-11.3.0-2023.3.6/jupytermatlabproxy/jupyter-matlab-proxy-0.7.1/src/jupyter_matlab_proxy/__init__.py
+--- 0.7.1.orig/GCCcore-11.3.0-2023.3.6/jupytermatlabproxy/jupyter-matlab-proxy-0.7.1/src/jupyter_matlab_proxy/__init__.py 2023-08-21 14:27:12.000000000 +0200
++++ 0.7.1/GCCcore-11.3.0-2023.3.6/jupytermatlabproxy/jupyter-matlab-proxy-0.7.1/src/jupyter_matlab_proxy/__init__.py 2023-08-29 22:16:29.568376240 +0200
+@@ -48,7 +48,7 @@
+ "--config",
+ config["extension_name"],
+ ],
+- "timeout": 100,
++ "timeout": 1800,
+ "environment": _get_env,
+ "absolute_url": True,
+ "launcher_entry": {"title": "Open MATLAB", "icon_path": icon_path},
diff --git a/Golden_Repo/m/MATLAB/MATLAB-2023a-GCCcore-11.3.0.eb b/Golden_Repo/m/MATLAB/MATLAB-2023a-GCCcore-11.3.0.eb
index df76b8ce554cf1c799d4d19e9331555b05af6dd5..afdfd67a0fc5e7beb0c15abf735fb136de2ac7c5 100644
--- a/Golden_Repo/m/MATLAB/MATLAB-2023a-GCCcore-11.3.0.eb
+++ b/Golden_Repo/m/MATLAB/MATLAB-2023a-GCCcore-11.3.0.eb
@@ -1,6 +1,13 @@
+# Attention: before calling 'eb':
+# export EB_MATLAB_KEY as fileInstallationKey
+# or export EB_MATLAB_LICFILE as license file
+
name = 'MATLAB'
version = '2023a'
+# only users of the UNIX-group 'matlab' must have access
+group = 'matlab'
+
homepage = 'https://www.mathworks.com/products/matlab.html'
description = """MATLAB is a high-level language and interactive environment
that enables you to perform computationally intensive tasks faster than with
@@ -19,10 +26,6 @@ dependencies = [
java_options = '-Xmx2048m'
-# Attention: before calling 'eb':
-# export EB_MATLAB_KEY as fileInstallationKey
-# or export EB_MATLAB_LICFILE as license file
-
postinstallcmds = [
# create a wrapper script to ensure we do not mess up the environment
# because MATLAB comes with its own libstdc++ and other system libs
@@ -45,14 +48,13 @@ postinstallcmds = [
'chmod +x %(installdir)s/bin/matlab',
]
-group = "matlab"
-
modloadmsg = """
Attention: This software is RESTRICTED to ACADEMIC users who are members of the group matlab\n.
"""
modextravars = {
- 'MLM_LICENSE_FILE': '27000@zam2076.zam.kfa-juelich.de'
+ 'MATLAB_ROOT': '%(installdir)s',
+ 'MLM_LICENSE_FILE': '27000@zam2076.zam.kfa-juelich.de',
}
sanity_check_paths = {