diff --git a/Golden_Repo/n/netCDF/netCDF-4.9.0-npsmpic-2022a.eb b/Golden_Repo/n/netCDF/netCDF-4.9.0-npsmpic-2022a.eb new file mode 100644 index 0000000000000000000000000000000000000000..aa9f7cd82d626169aabb1fecc0ab5a6e54bfec72 --- /dev/null +++ b/Golden_Repo/n/netCDF/netCDF-4.9.0-npsmpic-2022a.eb @@ -0,0 +1,78 @@ +name = 'netCDF' +version = '4.9.0' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data. +""" + +toolchain = {'name': 'npsmpic', 'version': '2022a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/Unidata/netcdf-c/archive/'] +sources = ['v%s.tar.gz' % (version)] +patches = [ + 'netCDF-%(version)s_fix-lib-name.patch', + 'netCDF-%(version)s_fix-linking-errors.patch', + 'netCDF-%(version)s_skip-nasa-test.patch', +] +checksums = [ + '9f4cb864f3ab54adb75409984c6202323d2fc66c003e5308f3cdf224ed41c0a6', # v4.9.0.tar.gz + # netCDF-4.9.0_fix-lib-name.patch + 'ed45ae6c49cf8dcddaadef4c5cf403049bf3f761187413d7b03754d319345d6a', + # netCDF-4.9.0_fix-linking-errors.patch + '2b9579c149579d137eb16ae5d790787774033dcec49c0d4993d9859f224e7b15', + # netCDF-4.9.0_skip-nasa-test.patch + '19d99e03c048b037dc01f03f5b8ddc910ebaceb076d0f050540d348f26dfcd2a', +] + +builddependencies = [ + ('Autotools', '20220317'), + ('CMake', '3.23.1'), + ('Doxygen', '1.9.4'), +] + +dependencies = [ + ('HDF5', '1.12.2'), + ('cURL', '7.83.0'), + ('Szip', '2.1.1'), + ('zstd', '1.5.2'), + ('bzip2', '1.0.8'), + ('libxml2', '2.9.13'), + ('PnetCDF', '1.12.3'), +] + +# disable tests that fail only with NVHPC - only needed when building with tests and without PnetCDF +# comment out tests for put_varX_schar +# preconfigopts = ("sed -i -e 's|NC_TEST(nc_put_var_schar);|/*NC_TEST(nc_put_var_schar);*/|g'" +# " -e 's|NC_TEST(nc_put_var1_schar);|/*NC_TEST(nc_put_var1_schar);*/|g'" +# " -e 's|NC_TEST(nc_put_vara_schar);|/*NC_TEST(nc_put_vara_schar);*/|g'" +# " -e 's|NC_TEST(nc_put_vars_schar);|/*NC_TEST(nc_put_vars_schar);*/|g'" +# " -e 's|NC_TEST(nc_put_varm_schar);|/*NC_TEST(nc_put_varm_schar);*/|g'" +# " -e 's|NC_TEST(nc_put_att_schar);|/*NC_TEST(nc_put_att_schar);*/|g'" +# " %(builddir)s/%(namelower)s-c-%(version)s/nc_test/nc_test.c &&") + +# comment out chunking tests +# preconfigopts += ("sed -i -e 's|diff -b \${srcdir}/ref_rem.dmp tmp_rem_\${zext}.txt|echo \"skipped by EasyBuild\"|g'" +# " -e 's|diff -b \${srcdir}/ref_ndims.dmp tmp_ndims_\${zext}.dmp|echo \"skipped by EasyBuild\"|g'" +# " -e 's|diff -b ${srcdir}/ref_misc1.dmp tmp_misc1_${zext}.dmp|echo \"skipped by EasyBuild\"|g'" +# " %(builddir)s/%(namelower)s-c-%(version)s/nczarr_test/run_chunkcases.sh &&") + +# make sure both static and shared libs are built +# enable PnetCDF +# and disable "remote" tests that access a unreliable external test server over internet +configopts = [ + "-DENABLE_PNETCDF=ON -DENABLE_DAP_REMOTE_TESTS=OFF -DBUILD_SHARED_LIBS=OFF -DMPIEXEC='/usr/bin/srun'", + "-DENABLE_PNETCDF=ON -DENABLE_DAP_REMOTE_TESTS=OFF -DBUILD_SHARED_LIBS=ON -DMPIEXEC='/usr/bin/srun'", +] + +# some tests try to start 16 MPI ranks, so we need to allow oversubscription to avoid failing tests +# pretestopts = "OMPI_MCA_rmaps_base_oversubscribe=1 " + +# switch off tests to build with PnetCDF, as cmake configuration for pnetcdf-based tests contains bugs +# will be fixed in 4.9.1 +# https://github.com/Unidata/netcdf-c/pull/2437 +# runtest = 'test' + +moduleclass = 'data' diff --git a/Golden_Repo/n/netCDF/netCDF-4.9.0-nvompic-2022a.eb b/Golden_Repo/n/netCDF/netCDF-4.9.0-nvompic-2022a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d96fd0b7b761103dd2f0d3c2d5f5f1957d7b20d4 --- /dev/null +++ b/Golden_Repo/n/netCDF/netCDF-4.9.0-nvompic-2022a.eb @@ -0,0 +1,78 @@ +name = 'netCDF' +version = '4.9.0' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data. +""" + +toolchain = {'name': 'nvompic', 'version': '2022a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = ['https://github.com/Unidata/netcdf-c/archive/'] +sources = ['v%s.tar.gz' % (version)] +patches = [ + 'netCDF-%(version)s_fix-lib-name.patch', + 'netCDF-%(version)s_fix-linking-errors.patch', + 'netCDF-%(version)s_skip-nasa-test.patch', +] +checksums = [ + '9f4cb864f3ab54adb75409984c6202323d2fc66c003e5308f3cdf224ed41c0a6', # v4.9.0.tar.gz + # netCDF-4.9.0_fix-lib-name.patch + 'ed45ae6c49cf8dcddaadef4c5cf403049bf3f761187413d7b03754d319345d6a', + # netCDF-4.9.0_fix-linking-errors.patch + '2b9579c149579d137eb16ae5d790787774033dcec49c0d4993d9859f224e7b15', + # netCDF-4.9.0_skip-nasa-test.patch + '19d99e03c048b037dc01f03f5b8ddc910ebaceb076d0f050540d348f26dfcd2a', +] + +builddependencies = [ + ('Autotools', '20220317'), + ('CMake', '3.23.1'), + ('Doxygen', '1.9.4'), +] + +dependencies = [ + ('HDF5', '1.12.2'), + ('cURL', '7.83.0'), + ('Szip', '2.1.1'), + ('zstd', '1.5.2'), + ('bzip2', '1.0.8'), + ('libxml2', '2.9.13'), + ('PnetCDF', '1.12.3'), +] + +# disable tests that fail only with NVHPC - only needed when building with tests and without PnetCDF +# comment out tests for put_varX_schar +# preconfigopts = ("sed -i -e 's|NC_TEST(nc_put_var_schar);|/*NC_TEST(nc_put_var_schar);*/|g'" +# " -e 's|NC_TEST(nc_put_var1_schar);|/*NC_TEST(nc_put_var1_schar);*/|g'" +# " -e 's|NC_TEST(nc_put_vara_schar);|/*NC_TEST(nc_put_vara_schar);*/|g'" +# " -e 's|NC_TEST(nc_put_vars_schar);|/*NC_TEST(nc_put_vars_schar);*/|g'" +# " -e 's|NC_TEST(nc_put_varm_schar);|/*NC_TEST(nc_put_varm_schar);*/|g'" +# " -e 's|NC_TEST(nc_put_att_schar);|/*NC_TEST(nc_put_att_schar);*/|g'" +# " %(builddir)s/%(namelower)s-c-%(version)s/nc_test/nc_test.c &&") + +# comment out chunking tests +# preconfigopts += ("sed -i -e 's|diff -b \${srcdir}/ref_rem.dmp tmp_rem_\${zext}.txt|echo \"skipped by EasyBuild\"|g'" +# " -e 's|diff -b \${srcdir}/ref_ndims.dmp tmp_ndims_\${zext}.dmp|echo \"skipped by EasyBuild\"|g'" +# " -e 's|diff -b ${srcdir}/ref_misc1.dmp tmp_misc1_${zext}.dmp|echo \"skipped by EasyBuild\"|g'" +# " %(builddir)s/%(namelower)s-c-%(version)s/nczarr_test/run_chunkcases.sh &&") + +# make sure both static and shared libs are built +# enable PnetCDF +# and disable "remote" tests that access a unreliable external test server over internet +configopts = [ + "-DENABLE_PNETCDF=ON -DENABLE_DAP_REMOTE_TESTS=OFF -DBUILD_SHARED_LIBS=OFF -DMPIEXEC='/usr/bin/srun'", + "-DENABLE_PNETCDF=ON -DENABLE_DAP_REMOTE_TESTS=OFF -DBUILD_SHARED_LIBS=ON -DMPIEXEC='/usr/bin/srun'", +] + +# some tests try to start 16 MPI ranks, so we need to allow oversubscription to avoid failing tests +# pretestopts = "OMPI_MCA_rmaps_base_oversubscribe=1 " + +# switch off tests to build with PnetCDF, as cmake configuration for pnetcdf-based tests contains bugs +# will be fixed in 4.9.1 +# https://github.com/Unidata/netcdf-c/pull/2437 +# runtest = 'test' + +moduleclass = 'data'