diff --git a/Custom_MNS/flexible_custom_hierarchical_mns.py b/Custom_MNS/flexible_custom_hierarchical_mns.py
index 5129c2856e0d4e8ac923bfc60004e7d333f5abb4..8e102c05052bdc84e624c70376f2e6a451ed74a0 100644
--- a/Custom_MNS/flexible_custom_hierarchical_mns.py
+++ b/Custom_MNS/flexible_custom_hierarchical_mns.py
@@ -36,7 +36,7 @@ COMP_NAME_VERSION_TEMPLATES = {
}
# Compiler relevant version numbers
-comp_relevant_versions = {
+COMP_RELEVANT_VERSIONS = {
'intel': 1,
'intel-compilers': 1,
'PGI': 1,
@@ -47,20 +47,26 @@ comp_relevant_versions = {
# 'GCCcore': 1,
}
+# Allow to reuse the stacks from other MPIs
+SWAPPABLE_MPIS = {
+ 'BullMPI': ('OpenMPI', None),
+ 'impi': ('psmpi', '5.6'),
+}
+
# MPI relevant version numbers
-mpi_relevant_versions = {
+MPI_RELEVANT_VERSIONS = {
'impi': 1,
- 'psmpi': 2,
+ 'psmpi': 1,
'MVAPICH2': 2,
'OpenMPI': 2,
'BullMPI': 2,
}
# MPIs with settings modules
-mpi_with_settings = ['psmpi', 'impi', 'OpenMPI', 'BullMPI']
+MPI_WITH_SETTINGS = ['psmpi', 'impi', 'OpenMPI', 'BullMPI']
# Communication packages with settings modules
-pkg_with_settings = ['UCX', 'NCCL', 'LWP']
+PKG_WITH_SETTINGS = ['UCX', 'NCCL', 'LWP']
class FlexibleCustomHierarchicalMNS(HierarchicalMNS):
"""Class implementing an example hierarchical module naming scheme."""
@@ -77,7 +83,7 @@ class FlexibleCustomHierarchicalMNS(HierarchicalMNS):
modname_regex = re.compile('^%s/\S+$' % re.escape('ParaStationMPI'))
elif name == 'impi':
modname_regex = re.compile('^%s/\S+$' % re.escape('IntelMPI'))
- elif name in ['-'.join([x, 'settings']) for x in mpi_with_settings]:
+ elif name in ['-'.join([x, 'settings']) for x in MPI_WITH_SETTINGS]:
modname_regex = re.compile('^%s/\S+$' % re.escape('MPI-settings'))
elif name == 'LWP-settings':
# Match almost anything, since the name depends actually on the version, to avoid load conflicts
@@ -95,9 +101,9 @@ class FlexibleCustomHierarchicalMNS(HierarchicalMNS):
comp_name, comp_ver = comp_info
# Strip the irrelevant bits of the version and append the suffix again
- if comp_name in comp_relevant_versions:
+ if comp_name in COMP_RELEVANT_VERSIONS:
suffix = '-'.join(comp_ver.split('-')[1:])
- comp_ver = '.'.join(comp_ver.split('.')[:comp_relevant_versions[comp_name]])
+ comp_ver = '.'.join(comp_ver.split('.')[:COMP_RELEVANT_VERSIONS[comp_name]])
if suffix:
comp_ver += '-%s' % suffix
@@ -112,7 +118,7 @@ class FlexibleCustomHierarchicalMNS(HierarchicalMNS):
# Find suffix, if any, to be appended. Try to be clever, since the suffix is embedded in the version
# and sometimes the version might include a string that looks like a suffix (ie: psmpi-5.4.0-1)
- if mpi_name in mpi_relevant_versions:
+ if mpi_name in MPI_RELEVANT_VERSIONS:
# Find possible suffixes
possible_suffixes = mpi_ver.split('-')[1:]
suffix = ''
@@ -124,7 +130,7 @@ class FlexibleCustomHierarchicalMNS(HierarchicalMNS):
# suffix_index = 1
# suffix = '-'.join(mpi_ver.split('-')[suffix_index:])
- mpi_ver = '.'.join(mpi_ver.split('.')[:mpi_relevant_versions[mpi_name]])
+ mpi_ver = '.'.join(mpi_ver.split('.')[:MPI_RELEVANT_VERSIONS[mpi_name]])
if suffix:
mpi_ver += '-%s' % suffix
@@ -176,10 +182,10 @@ class FlexibleCustomHierarchicalMNS(HierarchicalMNS):
subdir = CORE
# except if the module is a MPI settings module
stripped_name = ec['name'].split('-settings')[0]
- if stripped_name in mpi_with_settings:
+ if stripped_name in MPI_WITH_SETTINGS:
subdir = os.path.join(MPI_SETTINGS, stripped_name, ec['version'])
# or a module is for a package with settings
- elif (stripped_name in pkg_with_settings and '-settings' in ec['name']):
+ elif (stripped_name in PKG_WITH_SETTINGS and '-settings' in ec['name']):
subdir = os.path.join(PKG_SETTINGS, stripped_name)
else:
tc_comp_name, tc_comp_ver = self._find_relevant_compiler_info(tc_comp_info)
@@ -207,7 +213,7 @@ class FlexibleCustomHierarchicalMNS(HierarchicalMNS):
MPI-settings/plain, etc
"""
stripped_name = re.sub('-settings$', '', ec['name'])
- if stripped_name in mpi_with_settings and '-settings' in ec['name']:
+ if stripped_name in MPI_WITH_SETTINGS and '-settings' in ec['name']:
return os.path.join('MPI-settings', ec['versionsuffix'])
elif stripped_name.startswith('LWP') and '-settings' in ec['name']:
return os.path.join(ec['version'], 'enable')
@@ -275,16 +281,16 @@ class FlexibleCustomHierarchicalMNS(HierarchicalMNS):
tc_comp_name, tc_comp_ver = self._find_relevant_compiler_info(tc_comp_info)
mpi_name, mpi_ver = self._find_relevant_mpi_info(ec)
# Hack the module path extension, so BullMPI actually reuses the stack from OpenMPI
- # instead of building everything on top unnecessarily
- if mpi_name in 'BullMPI':
- paths.append(os.path.join(MPI, tc_comp_name, tc_comp_ver, 'OpenMPI', mpi_ver))
+ # instead of building everything on top unnecessarily. Same for impi on top of psmpi
+ if mpi_name in SWAPPABLE_MPIS:
+ paths.append(os.path.join(MPI, tc_comp_name, tc_comp_ver, SWAPPABLE_MPIS[mpi_name][0], SWAPPABLE_MPIS[mpi_name][1] or mpi_ver))
else:
paths.append(os.path.join(MPI, tc_comp_name, tc_comp_ver, mpi_name, mpi_ver))
- if ec['name'] in mpi_with_settings:
+ if ec['name'] in MPI_WITH_SETTINGS:
paths.append(os.path.join(MPI_SETTINGS, mpi_name, mpi_ver))
- elif ec['name'] in pkg_with_settings:
+ elif ec['name'] in PKG_WITH_SETTINGS:
paths.append(os.path.join(PKG_SETTINGS, ec['name']))
return paths
diff --git a/Golden_Repo/README.md b/Golden_Repo/README.md
index 4f4c6c69932e5d1530aeb095b6dde0babe6a9d09..a80185d681d856ed636b9d1d6ece352fc006f916 100644
--- a/Golden_Repo/README.md
+++ b/Golden_Repo/README.md
@@ -12,30 +12,30 @@ The table below shows the details of the toolchains in the 2023 stage:
|-----------------|---------------------------|----------------|------------------|-------------------------|----------|----------------|---------------------------|
| GCC | 11.3.0 | 11.3.0 | GCC 11.3.0 | | | | GCCcore |
| NVHPC | TBD-GCC-11.3.0 | 11.3.0 | NVHPC TBD | | 11.7§ | | GCCcore |
-| intel-compilers | 2022.2.0 | 11.3.0 | Intel 2022.2.0 | | | | GCCcore |
+| intel-compilers | 2022.1.0 | 11.3.0 | Intel 2022.1.0 | | | | GCCcore |
- Compilers+MPI
| Toolchain name | Toolchain version | Underlying GCC | Compiler | MPI | CUDA | Math libraries | Includes software from |
|-----------------|---------------------------|----------------|------------------|-------------------------|----------|----------------|---------------------------|
-| gpsmpi | 2022a | 11.3.0 | GCC 11.3.0 | ParaStationMPI 5.6.X | 11.7§ | | GCCcore, GCC |
+| gpsmpi | 2022a | 11.3.0 | GCC 11.3.0 | ParaStationMPI 5.X | 11.7§ | | GCCcore, GCC |
| nvompic | 2022a | 11.3.0 | NVHPC TBD | OpenMPI 4.1.X | 11.7 | | GCCcore, NVHPC |
-| npsmpic | 2022a | 11.3.0 | NVHPC TBD | ParaStationMPI 5.6.X | 11.7 | | GCCcore, NVHPC |
-| ipsmpi | 2022a | 11.3.0 | Intel 2022.2.0 | ParaStationMPI 5.6.X | 11.7§ | | GCCcore, intel-compilers |
-| iimpi | 2022a | 11.3.0 | Intel 2022.2.0 | Intel MPI 2021.X.Y | | | GCCcore, intel-compilers |
+| npsmpic | 2022a | 11.3.0 | NVHPC TBD | ParaStationMPI 5.X | 11.7 | | GCCcore, NVHPC |
+| ipsmpi | 2022a | 11.3.0 | Intel 2022.1.0 | ParaStationMPI 5.X | 11.7§ | | GCCcore, intel-compilers |
+| iimpi | 2022a | 11.3.0 | Intel 2022.1.0 | Intel MPI 2021.X.Y | | | GCCcore, intel-compilers |
| gompi | 2022a | 11.3.0 | GCC 11.3.0 | OpenMPI 4.1.X | 11.7§ | | GCCcore, GCC |
-| iompi | 2022a | 11.3.0 | Intel 2022.2.0 | OpenMPI 4.1.X | 11.7§ | | GCCcore, intel-compilers |
+| iompi | 2022a | 11.3.0 | Intel 2022.1.0 | OpenMPI 4.1.X | 11.7§ | | GCCcore, intel-compilers |
- Compilers+MPI+Math
| Toolchain name | Toolchain version | Underlying GCC | Compiler | MPI | CUDA | Math libraries | Includes software from |
|-----------------|---------------------------|----------------|------------------|-------------------------|----------|----------------|---------------------------|
| foss | 2022a | 11.3.0 | GCC 11.3.0 | OpenMPI 4.1.X | 11.7§ | FlexiBlas (MKL 2022.1.0, BLIS 0.9.0, OpenBLAS 0.3.20) | GCCcore, GCC, gopmpi |
-| gpsmkl | 2022a | 11.3.0 | GCC 11.3.0 | ParaStationMPI 5.6.X | 11.7§ | MKL 2022.2.0 | GCCcore, GCC, gpsmpi |
-| gomkl | 2022a | 11.3.0 | GCC 11.3.0 | OpenMPI 4.1.X | 11.7§ | MKL 2022.2.0 | GCCcore, GCC, gompi |
-| intel | 2022a | 11.3.0 | Intel 2022.2.0 | Intel MPI 2021.X.Y | | MKL 2022.2.0 | GCCcore, GCC, iimpi |
-| intel-para | 2022a | 11.3.0 | Intel 2022.2.0 | ParaStationMPI 5.6.X | | MKL 2022.2.0 | GCCcore, GCC, ipsmpi |
-| iomkl | 2022a | 11.3.0 | Intel 2022.2.0 | OpenMPI 4.1.X | 11.7§ | MKL 2022.2.0 | GCCcore, GCC, iompi |
+| gpsmkl | 2022a | 11.3.0 | GCC 11.3.0 | ParaStationMPI 5.X | 11.7§ | MKL 2022.1.0 | GCCcore, GCC, gpsmpi |
+| gomkl | 2022a | 11.3.0 | GCC 11.3.0 | OpenMPI 4.1.X | 11.7§ | MKL 2022.1.0 | GCCcore, GCC, gompi |
+| intel | 2022a | 11.3.0 | Intel 2022.1.0 | Intel MPI 2021.X.Y | | MKL 2022.1.0 | GCCcore, GCC, iimpi |
+| intel-para | 2022a | 11.3.0 | Intel 2022.1.0 | ParaStationMPI 5.X | | MKL 2022.1.0 | GCCcore, GCC, ipsmpi |
+| iomkl | 2022a | 11.3.0 | Intel 2022.1.0 | OpenMPI 4.1.X | 11.7§ | MKL 2022.1.0 | GCCcore, GCC, iompi |
§ Not included in the toolchain just as dependency
diff --git a/Golden_Repo/a/ANTLR/ANTLR-2.7.7-GCCcore-11.3.0.eb b/Golden_Repo/a/ANTLR/ANTLR-2.7.7-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..cc53034be273ec8a549f8dc8e75b161a9787fd98
--- /dev/null
+++ b/Golden_Repo/a/ANTLR/ANTLR-2.7.7-GCCcore-11.3.0.eb
@@ -0,0 +1,41 @@
+easyblock = 'ConfigureMake'
+
+name = 'ANTLR'
+version = "2.7.7"
+
+homepage = 'http://www.antlr2.org/'
+description = """ANTLR, ANother Tool for Language Recognition, (formerly PCCTS)
+ is a language tool that provides a framework for constructing recognizers,
+ compilers, and translators from grammatical descriptions containing
+ Java, C#, C++, or Python actions.
+"""
+
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['http://www.antlr2.org/download/']
+sources = [SOURCELOWER_TAR_GZ]
+patches = ['%(name)s-%(version)s_includes.patch']
+checksums = [
+ '853aeb021aef7586bda29e74a6b03006bcb565a755c86b66032d8ec31b67dbb9', # antlr-2.7.7.tar.gz
+ # ANTLR-2.7.7_includes.patch
+ 'd167d3248a03301bc93efcb37d5df959aae6794968e42231af0b0dd26d6a2e66',
+]
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('Java', '11', '', SYSTEM),
+ ('Python', '3.10.4'),
+]
+
+configopts = '--disable-examples --disable-csharp '
+
+sanity_check_paths = {
+ 'files': ['bin/antlr', 'bin/antlr-config'],
+ 'dirs': ['include'],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/a/ARMForge/ARMForge-22.1.1.eb b/Golden_Repo/a/ARMForge/ARMForge-22.1.1.eb
new file mode 100644
index 0000000000000000000000000000000000000000..ddaf64a03567435aef93a3da5e14d291bf8bae83
--- /dev/null
+++ b/Golden_Repo/a/ARMForge/ARMForge-22.1.1.eb
@@ -0,0 +1,43 @@
+# For using $SYSTEMNAME to determine license path. The local prefix is to appease the checker
+import os as local_os
+
+easyblock = 'EB_Allinea'
+
+name = 'ARMForge'
+version = '22.1.1'
+
+homepage = 'https://developer.arm.com/tools-and-software/server-and-hpc/debug-and-profile/arm-forge'
+description = """
+Arm Forge is the leading server and HPC development tool suite in research, industry, and academia for C, C++, Fortran,
+and Python high performance code on Linux.
+
+Arm Forge includes Arm DDT, the best debugger for time-saving high performance application debugging, Arm MAP, the
+trusted performance profiler for invaluable optimization advice, and Arm Performance Reports to help you analyze your
+HPC application runs.
+"""
+
+usage = """For more information, type "ddt -h", "map -h" or "perf-report -h"
+
+For the ARMForge User Guide, please see: "$EBROOTARMFORGE/doc/userguide.pdf"
+"""
+
+toolchain = SYSTEM
+
+source_urls = ['https://content.allinea.com/downloads/']
+sources = ['arm-forge-%(version)s-linux-x86_64.tar']
+checksums = ['392a7b0b4a212c506dc600ca2c37001cf85780ea2248fc47701953f12ef35300']
+
+start_dir = '%(builddir)s/arm-forge-%(version)s-linux-x86_64/'
+install_cmd = "./textinstall.sh --accept-licence %(installdir)s"
+local_licdir = '/p/software/%s/licenses/armforge' % local_os.environ['SYSTEMNAME']
+license_file = [
+ '%s/LicenseForge.lic' % local_licdir,
+ '%s/LicensePR.lic' % local_licdir
+]
+
+sanity_check_paths = {
+ 'files': ['bin/ddt', 'bin/perf-report'],
+ 'dirs': [],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/a/ARPACK-NG/ARPACK-NG-3.8.0-gpsmkl-2022a.eb b/Golden_Repo/a/ARPACK-NG/ARPACK-NG-3.8.0-gpsmkl-2022a.eb
new file mode 100644
index 0000000000000000000000000000000000000000..b1bf17f80500d57dd14504ad19a96b779dfee91a
--- /dev/null
+++ b/Golden_Repo/a/ARPACK-NG/ARPACK-NG-3.8.0-gpsmkl-2022a.eb
@@ -0,0 +1,35 @@
+easyblock = 'ConfigureMake'
+
+name = 'arpack-ng'
+version = "3.8.0"
+
+homepage = 'https://github.com/opencollab/arpack-ng'
+description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems."""
+
+toolchain = {'name': 'gpsmkl', 'version': '2022a'}
+toolchainopts = {'pic': True, 'usempi': True}
+
+
+source_urls = ['https://github.com/opencollab/arpack-ng/archive/']
+sources = ['%(version)s.tar.gz']
+checksums = ['ada5aeb3878874383307239c9235b716a8a170c6d096a6625bfd529844df003d']
+
+builddependencies = [
+ ('Autotools', '20220317'),
+ ('pkgconf', '1.8.0'),
+]
+
+dependencies = [
+ ('Eigen', '3.4.0')
+]
+
+preconfigopts = "sh bootstrap && "
+configopts = '--enable-mpi --with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"'
+
+sanity_check_paths = {
+ 'files': ["lib64/libarpack.la", "lib64/libarpack.%s" % SHLIB_EXT,
+ "lib64/libparpack.la", "lib64/libparpack.%s" % SHLIB_EXT],
+ 'dirs': []
+}
+
+moduleclass = 'numlib'
diff --git a/Golden_Repo/a/Apptainer-Tools/Apptainer-Tools-2023-GCCcore-11.3.0.eb b/Golden_Repo/a/Apptainer-Tools/Apptainer-Tools-2023-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..86fee652a1a4ceca55433d5b2949946e25c849fe
--- /dev/null
+++ b/Golden_Repo/a/Apptainer-Tools/Apptainer-Tools-2023-GCCcore-11.3.0.eb
@@ -0,0 +1,46 @@
+easyblock = 'PythonBundle'
+name = 'Apptainer-Tools'
+version = '2023'
+
+homepage = 'https://gitlab.version.fz-juelich.de/hps-public/container-build-system-cli'
+description = """Apptainer-Tools contain a bunch of tools for Apptainer,
+ e.g. the JSC Build System CLI or singularity-compose.
+"""
+
+site_contacts = 'Ruben Simons <r.simons@fz-juelich.de>'
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+builddependencies = [('binutils', '2.38')]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('pretty-yaml', '21.10.1')
+]
+
+use_pip = True
+
+exts_list = [
+ ('semver', '2.13.0', {
+ 'source_urls': ['https://pypi.python.org/packages/source/p/semver'],
+ 'checksums': ['fa0fe2722ee1c3f57eac478820c3a5ae2f624af8264cbdf9000c980ff7f75e3f'],
+ }),
+ ('spython', '0.3.0', {
+ 'source_urls': ['https://pypi.python.org/packages/source/p/spython'],
+ 'checksums': ['1bbadb18829aaf18e68bcdb9850e6e8c1e1be9066fbd4b71e1fff88f7d80b76f'],
+ }),
+ ('singularity-compose', '0.1.18', {
+ 'modulename': 'scompose',
+ 'source_urls': ['https://pypi.python.org/packages/source/p/singularity-compose'],
+ 'checksums': ['177de30bd8c7813bfe668af20e93a0fa9bed0f00541611a1a2cebff49812f54f'],
+ }),
+ ('sib', '0.1.1', {
+ 'modulename': 'singularitydb_client',
+ 'sources': ['container-build-system-cli-v%(version)s.tar.gz'],
+ 'checksums': ['ac008ec07b886470e916a590b965624d89e8206b491aaef697b8a425f3718dd6'],
+ }),
+]
+
+sanity_pip_check = True
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/b/BLIS/BLIS-0.9.0-GCCcore-11.3.0.eb b/Golden_Repo/b/BLIS/BLIS-0.9.0-GCC-11.3.0.eb
similarity index 95%
rename from Golden_Repo/b/BLIS/BLIS-0.9.0-GCCcore-11.3.0.eb
rename to Golden_Repo/b/BLIS/BLIS-0.9.0-GCC-11.3.0.eb
index 9d8b36beaea602c9ccb14e9ebbf403d3ee2bddc7..a24a015854f9d5fd10f82d0bd7b46efe363a7440 100644
--- a/Golden_Repo/b/BLIS/BLIS-0.9.0-GCCcore-11.3.0.eb
+++ b/Golden_Repo/b/BLIS/BLIS-0.9.0-GCC-11.3.0.eb
@@ -7,7 +7,7 @@ homepage = 'https://github.com/flame/blis/'
description = """BLIS is a portable software framework for instantiating high-performance
BLAS-like dense linear algebra libraries."""
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchain = {'name': 'GCC', 'version': '11.3.0'}
source_urls = ['https://github.com/flame/blis/archive/']
sources = ['%(version)s.tar.gz']
diff --git a/Golden_Repo/c/CFITSIO/CFITSIO-4.0.0_install_test_data.patch b/Golden_Repo/c/CFITSIO/CFITSIO-4.0.0_install_test_data.patch
new file mode 100644
index 0000000000000000000000000000000000000000..7437760d4d28a784837d940a78eafd5b0a5d8077
--- /dev/null
+++ b/Golden_Repo/c/CFITSIO/CFITSIO-4.0.0_install_test_data.patch
@@ -0,0 +1,13 @@
+--- Makefile.in.orig 2021-11-05 17:08:01.927879000 +0100
++++ Makefile.in 2021-11-05 17:08:42.545401000 +0100
+@@ -31,8 +31,9 @@
+ CFITSIO_BIN = ${DESTDIR}@bindir@
+ CFITSIO_LIB = ${DESTDIR}@libdir@
+ CFITSIO_INCLUDE = ${DESTDIR}@includedir@
+-INSTALL_DIRS = ${DESTDIR}@INSTALL_ROOT@ ${CFITSIO_INCLUDE} ${CFITSIO_LIB} ${CFITSIO_LIB}/pkgconfig
++CFITSIO_DATADIR = ${DESTDIR}@datadir@
+
++INSTALL_DIRS = ${DESTDIR}@INSTALL_ROOT@ ${CFITSIO_INCLUDE} ${CFITSIO_LIB} ${CFITSIO_LIB}/pkgconfig ${CFITSIO_DATADIR}
+
+ SHELL = /bin/sh
+ ARCHIVE = @ARCHIVE@
diff --git a/Golden_Repo/c/CFITSIO/CFITSIO-4.2.0-GCCcore-11.3.0.eb b/Golden_Repo/c/CFITSIO/CFITSIO-4.2.0-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..6cc7df1d3d8e0514452dcc839a8609df861037f7
--- /dev/null
+++ b/Golden_Repo/c/CFITSIO/CFITSIO-4.2.0-GCCcore-11.3.0.eb
@@ -0,0 +1,42 @@
+easyblock = 'ConfigureMake'
+
+name = 'CFITSIO'
+version = '4.2.0'
+
+homepage = 'http://heasarc.gsfc.nasa.gov/fitsio/'
+description = """CFITSIO is a library of C and Fortran subroutines for reading and writing data files in
+FITS (Flexible Image Transport System) data format.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['http://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/']
+sources = ['%%(namelower)s-%s.tar.gz' % version]
+patches = ['CFITSIO-4.0.0_install_test_data.patch']
+checksums = [
+ {'cfitsio-4.2.0.tar.gz': 'eba53d1b3f6e345632bb09a7b752ec7ced3d63ec5153a848380f3880c5d61889'},
+ {'CFITSIO-4.0.0_install_test_data.patch': '75559db8b0648bc90ea9bb81a74acfd89913236ee0a2daf533477cddd37ea8a6'},
+]
+
+dependencies = [('cURL', '7.83.0')]
+
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+# make would create just static libcfitsio.a.
+# Let's create dynamic lib and testprog too.
+buildopts = '&& make shared && make testprog'
+
+sanity_check_paths = {
+ 'files': ['lib/libcfitsio.a', 'lib/libcfitsio.%s' % SHLIB_EXT],
+ 'dirs': ['include'],
+}
+
+sanity_check_commands = [
+ ('cd %(installdir)s/share && testprog'),
+]
+
+moduleclass = 'lib'
diff --git a/Golden_Repo/c/CubeGUI/CubeGUI-4.8-GCCcore-11.3.0.eb b/Golden_Repo/c/CubeGUI/CubeGUI-4.8-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..8d1d5cf72bc4ae530886da63ec462b19e6f0950b
--- /dev/null
+++ b/Golden_Repo/c/CubeGUI/CubeGUI-4.8-GCCcore-11.3.0.eb
@@ -0,0 +1,60 @@
+##
+# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild
+#
+# Copyright:: Copyright 2018-2022 Juelich Supercomputing Centre, Germany
+# Authors:: Markus Geimer <m.geimer@fz-juelich.de>
+# Christian Feld <c.feld@fz-juelich.de>
+# License:: 3-clause BSD
+#
+# This work is based on experiences from the UNITE project
+# http://apps.fz-juelich.de/unite/
+##
+
+easyblock = 'EB_Score_minus_P'
+
+name = 'CubeGUI'
+version = '4.8'
+
+homepage = 'https://www.scalasca.org/software/cube-4.x/download.html'
+description = """
+Cube, which is used as performance report explorer for Scalasca and Score-P,
+is a generic tool for displaying a multi-dimensional performance space
+consisting of the dimensions (i) performance metric, (ii) call path, and
+(iii) system resource. Each dimension can be represented as a tree, where
+non-leaf nodes of the tree can be collapsed or expanded to achieve the
+desired level of granularity.
+
+This module provides the Cube graphical report explorer.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['http://perftools.pages.jsc.fz-juelich.de/cicd/cubegui/tags/cubegui-%(version)s']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['1df8fcaea95323e7eaf0cc010784a41243532c2123a27ce93cb7e3241557ff76']
+
+builddependencies = [
+ # use same binutils version that was used when building GCCcore
+ ('binutils', '2.38'),
+ ('CubeLib', '4.8'),
+]
+
+dependencies = [
+ ('Qt5', '5.15.5'),
+]
+
+sanity_check_paths = {
+ 'files': ['bin/cube', 'bin/cubegui-config',
+ ('lib/libcube4gui.a', 'lib64/libcube4gui.a'),
+ ('lib/libcube4gui.%s' % SHLIB_EXT, 'lib64/libcube4gui.%s' % SHLIB_EXT)],
+ 'dirs': ['include/cubegui', 'lib/cube-plugins'],
+}
+
+# CubeGUI (and other Qt apps that use OpenGl) crash from time to time
+# or don't show any output when using Qt's WebEngine with the default
+# KNOB_MAX_WORKER_THREADS value of 65535. Even with a value of 10 this
+# behavior doesn't vanish. Thus, don't use WebEngine at all, although
+# it makes nicer output.
+configopts = '--without-web-engine'
+
+moduleclass = 'perf'
diff --git a/Golden_Repo/c/CubeLib/CubeLib-4.8-GCCcore-11.3.0.eb b/Golden_Repo/c/CubeLib/CubeLib-4.8-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..3a1685c1a907cf16af091f9b5caa121e680c0cb0
--- /dev/null
+++ b/Golden_Repo/c/CubeLib/CubeLib-4.8-GCCcore-11.3.0.eb
@@ -0,0 +1,58 @@
+##
+# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild
+#
+# Copyright:: Copyright 2018-2022 Juelich Supercomputing Centre, Germany
+# Authors:: Markus Geimer <m.geimer@fz-juelich.de>
+# Christian Feld <c.feld@fz-juelich.de>
+# License:: 3-clause BSD
+#
+# This work is based on experiences from the UNITE project
+# http://apps.fz-juelich.de/unite/
+##
+
+easyblock = 'EB_Score_minus_P'
+
+name = 'CubeLib'
+version = '4.8'
+
+homepage = 'https://www.scalasca.org/software/cube-4.x/download.html'
+description = """
+Cube, which is used as performance report explorer for Scalasca and Score-P,
+is a generic tool for displaying a multi-dimensional performance space
+consisting of the dimensions (i) performance metric, (ii) call path, and
+(iii) system resource. Each dimension can be represented as a tree, where
+non-leaf nodes of the tree can be collapsed or expanded to achieve the
+desired level of granularity.
+
+This module provides the Cube general purpose C++ library component and
+command-line tools.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['http://perftools.pages.jsc.fz-juelich.de/cicd/cubelib/tags/cubelib-%(version)s']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = [
+ '171c93ac5afd6bc74c50a9a58efdaf8589ff5cc1e5bd773ebdfb2347b77e2f68', # cubelib-4.8.tar.gz
+]
+
+builddependencies = [
+ # use same binutils version that was used when building GCCcore
+ ('binutils', '2.38'),
+ ('pkgconf', '1.8.0'),
+]
+
+dependencies = [
+ ('zlib', '1.2.12'),
+]
+
+configopts = '--enable-shared'
+
+sanity_check_paths = {
+ 'files': ['bin/cubelib-config',
+ ('lib/libcube4.a', 'lib64/libcube4.a'),
+ ('lib/libcube4.%s' % SHLIB_EXT, 'lib64/libcube4.%s' % SHLIB_EXT)],
+ 'dirs': ['include/cubelib'],
+}
+
+moduleclass = 'perf'
diff --git a/Golden_Repo/c/CubeWriter/CubeWriter-4.8-GCCcore-11.3.0.eb b/Golden_Repo/c/CubeWriter/CubeWriter-4.8-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..d80912fb8ac5f31595761f381fc987e619948fda
--- /dev/null
+++ b/Golden_Repo/c/CubeWriter/CubeWriter-4.8-GCCcore-11.3.0.eb
@@ -0,0 +1,57 @@
+##
+# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild
+#
+# Copyright:: Copyright 2018-2022 Juelich Supercomputing Centre, Germany
+# Authors:: Markus Geimer <m.geimer@fz-juelich.de>
+# Christian Feld <c.feld@fz-juelich.de>
+# License:: 3-clause BSD
+#
+# This work is based on experiences from the UNITE project
+# http://apps.fz-juelich.de/unite/
+##
+
+easyblock = 'EB_Score_minus_P'
+
+name = 'CubeWriter'
+version = '4.8'
+
+homepage = 'https://www.scalasca.org/software/cube-4.x/download.html'
+description = """
+Cube, which is used as performance report explorer for Scalasca and Score-P,
+is a generic tool for displaying a multi-dimensional performance space
+consisting of the dimensions (i) performance metric, (ii) call path, and
+(iii) system resource. Each dimension can be represented as a tree, where
+non-leaf nodes of the tree can be collapsed or expanded to achieve the
+desired level of granularity.
+
+This module provides the Cube high-performance C writer library component.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['http://perftools.pages.jsc.fz-juelich.de/cicd/cubew/tags/cubew-%(version)s']
+sources = ['cubew-%(version)s.tar.gz']
+checksums = [
+ '73c7f9e9681ee45d71943b66c01cfe675b426e4816e751ed2e0b670563ca4cf3', # cubew-4.8.tar.gz
+]
+
+builddependencies = [
+ # use same binutils version that was used when building GCCcore
+ ('binutils', '2.38'),
+ ('pkgconf', '1.8.0'),
+]
+
+dependencies = [
+ ('zlib', '1.2.12'),
+]
+
+configopts = '--enable-shared'
+
+sanity_check_paths = {
+ 'files': ['bin/cubew-config',
+ ('lib/libcube4w.a', 'lib64/libcube4w.a'),
+ ('lib/libcube4w.%s' % SHLIB_EXT, 'lib64/libcube4w.%s' % SHLIB_EXT)],
+ 'dirs': ['include/cubew'],
+}
+
+moduleclass = 'perf'
diff --git a/Golden_Repo/e/ecCodes/ecCodes-2.27.0-GCCcore-11.3.0-nompi.eb b/Golden_Repo/e/ecCodes/ecCodes-2.27.0-GCCcore-11.3.0-nompi.eb
new file mode 100644
index 0000000000000000000000000000000000000000..846d0238f4e3f594c857b67c9c04ba79c97b7ab9
--- /dev/null
+++ b/Golden_Repo/e/ecCodes/ecCodes-2.27.0-GCCcore-11.3.0-nompi.eb
@@ -0,0 +1,50 @@
+easyblock = 'CMakeMake'
+
+name = 'ecCodes'
+version = '2.27.0'
+versionsuffix = '-nompi'
+
+homepage = 'https://confluence.ecmwf.int/display/ECC/ecCodes+Home'
+description = """ecCodes is a package developed by ECMWF which provides an application programming interface and
+ a set of tools for decoding and encoding messages in the following formats: WMO FM-92 GRIB edition 1 and edition 2,
+ WMO FM-94 BUFR edition 3 and edition 4, WMO GTS abbreviated header (only decoding)."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'openmp': True}
+
+source_urls = ['https://confluence.ecmwf.int/download/attachments/45757960/']
+sources = ['eccodes-%(version)s-Source.tar.gz']
+checksums = ['ede5b3ffd503967a5eac89100e8ead5e16a881b7585d02f033584ed0c4269c99']
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('CMake', '3.23.1'),
+]
+
+dependencies = [
+ ('netCDF', '4.9.0', '-serial'),
+ ('JasPer', '2.0.33'),
+ ('libjpeg-turbo', '2.1.3'),
+ ('libpng', '1.6.37'),
+ ('zlib', '1.2.12'),
+ ('libaec', '1.0.6'),
+]
+
+# Python bindings are now provided by a separate package 'eccodes-python'
+configopts = "-DENABLE_NETCDF=ON -DENABLE_PNG=ON "
+configopts += "-DENABLE_JPG=ON -DENABLE_JPG_LIBJASPER=ON "
+configopts += "-DENABLE_ECCODES_OMP_THREADS=ON"
+
+local_exes = ['%s_%s' % (a, b)
+ for a in ['bufr', 'grib', 'gts', 'metar']
+ for b in ['compare', 'copy', 'dump', 'filter', 'get', 'ls']]
+local_exes += ['codes_%s' % c for c in ['count', 'info', 'split_file']]
+
+sanity_check_paths = {
+ 'files': ['bin/%s' % x for x in local_exes] +
+ ['lib/libeccodes_f90.%s' % SHLIB_EXT,
+ 'lib/libeccodes.%s' % SHLIB_EXT],
+ 'dirs': ['include'],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/f/FFTW/FFTW-3.3.10-GCCcore-11.3.0.eb b/Golden_Repo/f/FFTW/FFTW-3.3.10-GCC-11.3.0.eb
similarity index 89%
rename from Golden_Repo/f/FFTW/FFTW-3.3.10-GCCcore-11.3.0.eb
rename to Golden_Repo/f/FFTW/FFTW-3.3.10-GCC-11.3.0.eb
index 2e8ebbded3b019e4d759b0c59e54db705920e156..99e7044835e673f2744509f34db639d9485527a2 100644
--- a/Golden_Repo/f/FFTW/FFTW-3.3.10-GCCcore-11.3.0.eb
+++ b/Golden_Repo/f/FFTW/FFTW-3.3.10-GCC-11.3.0.eb
@@ -5,7 +5,7 @@ homepage = 'https://www.fftw.org'
description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT)
in one or more dimensions, of arbitrary input size, and of both real and complex data."""
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchain = {'name': 'GCC', 'version': '11.3.0'}
toolchainopts = {'pic': True}
source_urls = [homepage]
diff --git a/Golden_Repo/f/FLTK/FLTK-1.3.8-GCCcore-11.3.0.eb b/Golden_Repo/f/FLTK/FLTK-1.3.8-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..c0fd2e643748f7c45ca8b1611ac8660aad8a8e9c
--- /dev/null
+++ b/Golden_Repo/f/FLTK/FLTK-1.3.8-GCCcore-11.3.0.eb
@@ -0,0 +1,42 @@
+easyblock = 'ConfigureMake'
+
+name = 'FLTK'
+version = '1.3.8'
+
+homepage = 'https://www.fltk.org'
+description = """FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows,
+ and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL
+ and its built-in GLUT emulation."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://fltk.org/pub/%(namelower)s/%(version)s/']
+sources = ['%(namelower)s-%(version)s-source.tar.gz']
+patches = ['FLTK-1.3.6_fix-LDFLAGS.patch']
+checksums = [
+ 'f3c1102b07eb0e7a50538f9fc9037c18387165bc70d4b626e94ab725b9d4d1bf', # fltk-1.3.8-source.tar.gz
+ 'f8af2414a1ee193a186b0d98d1e3567add0ee003f44ec64dce2ce2dfd6d95ebf', # FLTK-1.3.6_fix-LDFLAGS.patch
+]
+
+configopts = '--enable-shared --enable-threads --enable-xft'
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('groff', '1.22.4'),
+]
+
+dependencies = [
+ ('OpenGL', '2022a'),
+ ('libpng', '1.6.37'),
+ ('libjpeg-turbo', '2.1.3'),
+ ('xprop', '1.2.5'),
+ ('zlib', '1.2.12'),
+]
+
+sanity_check_paths = {
+ 'files': ['bin/fltk-config', 'bin/fluid', 'lib/libfltk.a', 'lib/libfltk.%s' % SHLIB_EXT],
+ 'dirs': ['lib'],
+}
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/f/FlexiBLAS/FlexiBLAS-3.2.0-GCCcore-11.3.0.eb b/Golden_Repo/f/FlexiBLAS/FlexiBLAS-3.2.0-GCC-11.3.0.eb
similarity index 95%
rename from Golden_Repo/f/FlexiBLAS/FlexiBLAS-3.2.0-GCCcore-11.3.0.eb
rename to Golden_Repo/f/FlexiBLAS/FlexiBLAS-3.2.0-GCC-11.3.0.eb
index 5f008c4373e47f0bc983412189066fbe347f6910..73c7f6deef16c3ed19d20d0cd40e6d0eb393685f 100644
--- a/Golden_Repo/f/FlexiBLAS/FlexiBLAS-3.2.0-GCCcore-11.3.0.eb
+++ b/Golden_Repo/f/FlexiBLAS/FlexiBLAS-3.2.0-GCC-11.3.0.eb
@@ -7,10 +7,9 @@ homepage = 'https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release'
description = """FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation
used by a program without recompiling or relinking it."""
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchain = {'name': 'GCC', 'version': '11.3.0'}
local_extra_flags = "-fstack-protector-strong -fstack-clash-protection"
-toolchainopts = {'pic': True, 'extra_cflags': local_extra_flags,
- 'extra_fflags': local_extra_flags}
+toolchainopts = {'pic': True, 'extra_cflags': local_extra_flags, 'extra_fflags': local_extra_flags}
builddependencies = [
('CMake', '3.23.1'),
diff --git a/Golden_Repo/f/flatbuffers-python/flatbuffers-python-2.0-GCCcore-11.3.0.eb b/Golden_Repo/f/flatbuffers-python/flatbuffers-python-2.0-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..7913bb7c2be21d7965d61fabf3a309fb06ccb78f
--- /dev/null
+++ b/Golden_Repo/f/flatbuffers-python/flatbuffers-python-2.0-GCCcore-11.3.0.eb
@@ -0,0 +1,27 @@
+easyblock = 'PythonPackage'
+
+name = 'flatbuffers-python'
+version = '2.0'
+
+homepage = 'https://github.com/google/flatbuffers/'
+description = """Python Flatbuffers runtime library."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://pypi.python.org/packages/source/f/flatbuffers']
+sources = [{'download_filename': 'flatbuffers-%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
+checksums = ['12158ab0272375eab8db2d663ae97370c33f152b27801fa6024e1d6105fd4dd2']
+
+dependencies = [
+ ('binutils', '2.38'),
+ ('Python', '3.10.4'),
+]
+
+download_dep_fail = True
+use_pip = True
+sanity_pip_check = True
+
+preinstallopts = 'VERSION=%(version)s '
+options = {'modulename': 'flatbuffers'}
+
+moduleclass = 'devel'
diff --git a/Golden_Repo/f/flatbuffers/flatbuffers-2.0.0-GCCcore-11.3.0.eb b/Golden_Repo/f/flatbuffers/flatbuffers-2.0.0-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..080188887fdcc55261c7aab80b923925bb837172
--- /dev/null
+++ b/Golden_Repo/f/flatbuffers/flatbuffers-2.0.0-GCCcore-11.3.0.eb
@@ -0,0 +1,33 @@
+##
+# Author: Robert Mijakovic <robert.mijakovic@lxp.lu>
+##
+easyblock = 'CMakeNinja'
+
+name = 'flatbuffers'
+version = '2.0.0'
+
+homepage = 'https://github.com/google/flatbuffers/'
+description = """FlatBuffers: Memory Efficient Serialization Library"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/google/flatbuffers/archive/v%(version)s/']
+sources = [SOURCE_TAR_GZ]
+checksums = ['9ddb9031798f4f8754d00fca2f1a68ecf9d0f83dfac7239af1311e4fd9a565c4']
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('CMake', '3.23.1'),
+ ('Ninja', '1.10.2'),
+ ('Python', '3.10.4'),
+]
+
+configopts = '-DFLATBUFFERS_ENABLE_PCH=ON '
+
+sanity_check_paths = {
+ 'files': ['include/flatbuffers/flatbuffers.h', 'bin/flatc', 'lib/libflatbuffers.a'],
+ 'dirs': ['lib/cmake'],
+}
+
+moduleclass = 'devel'
diff --git a/Golden_Repo/f/fmt/fmt-9.1.0-GCCcore-11.3.0.eb b/Golden_Repo/f/fmt/fmt-9.1.0-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..ee5eb6a8fa86053f0e4e591703b6c54b090eceda
--- /dev/null
+++ b/Golden_Repo/f/fmt/fmt-9.1.0-GCCcore-11.3.0.eb
@@ -0,0 +1,28 @@
+easyblock = 'CMakeMake'
+
+name = 'fmt'
+version = '9.1.0'
+
+homepage = 'http://fmtlib.net/'
+description = "fmt (formerly cppformat) is an open-source formatting library."
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/fmtlib/fmt/releases/download/%(version)s/']
+sources = ['fmt-%(version)s.zip']
+checksums = ['cceb4cb9366e18a5742128cb3524ce5f50e88b476f1e54737a47ffdf4df4c996']
+
+builddependencies = [
+ ('CMake', '3.23.1'),
+ ('binutils', '2.38')
+]
+
+separate_build_dir = True
+
+sanity_check_paths = {
+ 'files': ['lib/libfmt.a'],
+ 'dirs': ['include/fmt', 'lib/cmake'],
+}
+
+moduleclass = 'lib'
diff --git a/Golden_Repo/f/foss/foss-2022a.eb b/Golden_Repo/f/foss/foss-2022a.eb
index 023d0ad977b097a1b9825302af2c03d5a40fd826..99d57d2d5fa0d202211518d6e7ec0be52e1584cc 100644
--- a/Golden_Repo/f/foss/foss-2022a.eb
+++ b/Golden_Repo/f/foss/foss-2022a.eb
@@ -19,8 +19,8 @@ local_comp_mpi_tc = ('gompi', version)
dependencies = [
('GCC', local_gccver),
('OpenMPI', '4.1.4', '', ('GCC', local_gccver)),
- ('FlexiBLAS', '3.2.0', '', ('GCCcore', local_gccver)),
- ('FFTW', '3.3.10', '', ('GCCcore', local_gccver)),
+ ('FlexiBLAS', '3.2.0', '', ('GCC', local_gccver)),
+ ('FFTW', '3.3.10', '', ('GCC', local_gccver)),
('FFTW.MPI', '3.3.10', '', local_comp_mpi_tc),
('ScaLAPACK', '2.2.0', '-fb', local_comp_mpi_tc),
]
diff --git a/Golden_Repo/g/GLM/GLM-0.9.9.8-GCCcore-11.3.0.eb b/Golden_Repo/g/GLM/GLM-0.9.9.8-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..22d687ed0f410f4145c65292ff79e811bbe80428
--- /dev/null
+++ b/Golden_Repo/g/GLM/GLM-0.9.9.8-GCCcore-11.3.0.eb
@@ -0,0 +1,33 @@
+easyblock = 'CMakeMake'
+
+name = 'GLM'
+version = '0.9.9.8'
+
+homepage = 'https://github.com/g-truc/glm'
+description = """
+OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics
+software based on the OpenGL Shading Language (GLSL) specifications."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://github.com/g-truc/glm/archive/']
+sources = ['%(version)s.tar.gz']
+patches = [
+ 'GLM-0.9.9.8_fix_missing_install.patch',
+]
+checksums = [
+ '7d508ab72cb5d43227a3711420f06ff99b0a0cb63ee2f93631b162bfe1fe9592', # 0.9.9.8.tar.gz
+ '1cc199f9d66679b0b5e9a9fbe20bca0d9b15760fa172ca8759dd15bab35802ca', # GLM-0.9.9.8_fix_missing_install.patch
+]
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('CMake', '3.23.1'),
+]
+
+sanity_check_paths = {
+ 'files': [],
+ 'dirs': ['include/glm/gtc', 'include/glm/gtx'],
+}
+
+moduleclass = 'lib'
diff --git a/Golden_Repo/g/GLM/GLM-0.9.9.8_fix_missing_install.patch b/Golden_Repo/g/GLM/GLM-0.9.9.8_fix_missing_install.patch
new file mode 100644
index 0000000000000000000000000000000000000000..cc9f8fcba8587316e67a56d71d1bd21f8405ca80
--- /dev/null
+++ b/Golden_Repo/g/GLM/GLM-0.9.9.8_fix_missing_install.patch
@@ -0,0 +1,15 @@
+Restore installation functionality which was removed in v0.9.9.6
+
+Åke Sandgren, 20200519
+diff -ru glm-0.9.9.8.orig/CMakeLists.txt glm-0.9.9.8/CMakeLists.txt
+--- glm-0.9.9.8.orig/CMakeLists.txt 2020-04-13 19:41:16.000000000 +0200
++++ glm-0.9.9.8/CMakeLists.txt 2020-05-19 16:16:12.731259305 +0200
+@@ -8,6 +8,8 @@
+ add_subdirectory(glm)
+ add_library(glm::glm ALIAS glm)
+
++install(DIRECTORY glm DESTINATION "include")
++
+ if(${CMAKE_SOURCE_DIR} STREQUAL ${CMAKE_CURRENT_SOURCE_DIR})
+
+ add_subdirectory(test)
diff --git a/Golden_Repo/g/GLPK/GLPK-5.0-GCCcore-11.3.0.eb b/Golden_Repo/g/GLPK/GLPK-5.0-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..685f4c6618f960daaff658d518fcf7b63917dda1
--- /dev/null
+++ b/Golden_Repo/g/GLPK/GLPK-5.0-GCCcore-11.3.0.eb
@@ -0,0 +1,31 @@
+easyblock = 'ConfigureMake'
+
+name = 'GLPK'
+version = '5.0'
+
+homepage = 'https://www.gnu.org/software/glpk/'
+description = """The GLPK (GNU Linear Programming Kit) package is intended for
+ solving large-scale linear programming (LP),
+ mixed integer programming (MIP), and other related problems.
+ It is a set of routines written in ANSI C
+ and organized in the form of a callable library."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = [GNU_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['4a1013eebb50f728fc601bdd833b0b2870333c3b3e5a816eeba921d95bec6f15']
+
+builddependencies = [('binutils', '2.38')]
+
+dependencies = [('GMP', '6.2.1')]
+
+configopts = "--with-gmp"
+
+sanity_check_paths = {
+ 'files': ['bin/glpsol', 'include/glpk.h'] +
+ ['lib/libglpk.%s' % x for x in [SHLIB_EXT, 'a']],
+ 'dirs': [],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/g/GTK2/GTK2-2.24.33-GCCcore-11.3.0.eb b/Golden_Repo/g/GTK2/GTK2-2.24.33-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..1330c197693fb4a1619de9517ccbb08c838423b0
--- /dev/null
+++ b/Golden_Repo/g/GTK2/GTK2-2.24.33-GCCcore-11.3.0.eb
@@ -0,0 +1,35 @@
+easyblock = 'ConfigureMake'
+
+name = 'GTK2'
+version = '2.24.33'
+
+homepage = 'https://www.gtk.org'
+description = """
+ The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://ftp.gnome.org/pub/GNOME/sources/gtk+/%(version_major_minor)s']
+sources = ['gtk+-%(version)s.tar.xz']
+checksums = ['ac2ac757f5942d318a311a54b0c80b5ef295f299c2a73c632f6bfb1ff49cc6da']
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('pkgconf', '1.8.0'),
+ ('GObject-Introspection', '1.72.0'),
+]
+dependencies = [
+ ('ATK', '2.38.0'),
+ ('Gdk-Pixbuf', '2.42.8'),
+ ('Pango', '1.50.7'),
+]
+
+configopts = "--disable-silent-rules --disable-glibtest --enable-introspection=yes --disable-visibility "
+
+sanity_check_paths = {
+ 'files': ['bin/gtk-update-icon-cache', 'lib/libgtk-x11-2.0.%s' % SHLIB_EXT],
+ 'dirs': ['include/gtk-2.0'],
+}
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/g/GTS/GTS-0.7.6-GCCcore-11.3.0.eb b/Golden_Repo/g/GTS/GTS-0.7.6-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..81da084b9880d206bcafb108d0735bd8e3d11408
--- /dev/null
+++ b/Golden_Repo/g/GTS/GTS-0.7.6-GCCcore-11.3.0.eb
@@ -0,0 +1,30 @@
+easyblock = 'ConfigureMake'
+
+name = 'GTS'
+version = '0.7.6'
+
+homepage = 'http://gts.sourceforge.net/'
+description = """GTS stands for the GNU Triangulated Surface Library.
+It is an Open Source Free Software Library intended to provide a set of useful
+functions to deal with 3D surfaces meshed with interconnected triangles."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['059c3e13e3e3b796d775ec9f96abdce8f2b3b5144df8514eda0cc12e13e8b81e']
+
+builddependencies = [
+ ('pkgconf', '1.8.0'),
+ ('binutils', '2.38'),
+]
+dependencies = [
+ ('GLib', '2.72.1'),
+]
+
+sanity_check_paths = {
+ 'files': ['lib/libgts.%s' % SHLIB_EXT, 'bin/gts2oogl', 'bin/gtscheck'],
+ 'dirs': [],
+}
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/g/Ghostscript/Ghostscript-9.56.1-GCCcore-11.3.0.eb b/Golden_Repo/g/Ghostscript/Ghostscript-9.56.1-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..e04d1119352a5126a1fa6bc7ba37a7669ad717c1
--- /dev/null
+++ b/Golden_Repo/g/Ghostscript/Ghostscript-9.56.1-GCCcore-11.3.0.eb
@@ -0,0 +1,59 @@
+easyblock = 'ConfigureMake'
+
+name = 'Ghostscript'
+version = '9.56.1'
+
+homepage = 'https://ghostscript.com'
+description = """Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to
+ different targets. It used to be part of the cups printing stack, but is no longer used for that."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = [
+ 'https://github.com/ArtifexSoftware/ghostpdl-downloads/releases/download/gs%s/' % version.replace('.', ''),
+]
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['1598b9a38659cce8448d42a73054b2f9cbfcc40a9b97eeec5f22d4d6cd1de8e6']
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('pkgconf', '1.8.0'),
+]
+
+dependencies = [
+ ('zlib', '1.2.12'),
+ ('libpng', '1.6.37'),
+ ('freetype', '2.12.1'),
+ ('libjpeg-turbo', '2.1.3'),
+ ('expat', '2.4.8'),
+ ('GLib', '2.72.1'),
+ ('cairo', '1.17.4'),
+ ('LibTIFF', '4.3.0'),
+ ('GTK2', '2.24.33'),
+]
+
+# Do not use local copies of zlib, jpeg, freetype, and png
+preconfigopts = "mv zlib zlib.no && mv jpeg jpeg.no && mv freetype freetype.no && mv libpng libpng.no && "
+preconfigopts += 'export LIBS="$LIBS -L$EBROOTZLIB/lib -lz" && '
+
+configopts = "--with-system-libtiff --enable-dynamic"
+
+# Avoid race condition in build if too much parallelism is used
+maxparallel = 4
+
+postinstallcmds = [
+ # build and install shared libs
+ "make so && make soinstall",
+ # install header files
+ "mkdir -p %(installdir)s/include/ghostscript",
+ "install -v -m644 base/*.h %(installdir)s/include/ghostscript",
+ "install -v -m644 psi/*.h %(installdir)s/include/ghostscript",
+]
+
+sanity_check_paths = {
+ 'files': ['bin/gs', 'lib/libgs.%s' % SHLIB_EXT],
+ 'dirs': ['lib/ghostscript', 'include/ghostscript', 'share/man'],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/g/Graphviz/Graphviz-5.0.0-GCCcore-11.3.0.eb b/Golden_Repo/g/Graphviz/Graphviz-5.0.0-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..2a6d46501eb7deb90ab4e6a3e20625bd539d139e
--- /dev/null
+++ b/Golden_Repo/g/Graphviz/Graphviz-5.0.0-GCCcore-11.3.0.eb
@@ -0,0 +1,95 @@
+easyblock = 'ConfigureMake'
+
+name = 'Graphviz'
+version = '5.0.0'
+local_pyver_major = '3'
+
+homepage = 'https://www.graphviz.org/'
+description = """Graphviz is open source graph visualization software. Graph visualization
+ is a way of representing structural information as diagrams of
+ abstract graphs and networks. It has important applications in networking,
+ bioinformatics, software engineering, database and web design, machine learning,
+ and in visual interfaces for other technical domains."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'cstd': 'c++11'}
+
+source_urls = ['https://gitlab.com/graphviz/graphviz/-/archive/%(version)s']
+sources = [SOURCELOWER_TAR_GZ]
+patches = ['%(name)s-%(version)s_skip-install-data-hook.patch']
+checksums = [
+ 'f8cc576694ae93659f453b6b4a4c2f04572a90cfccdca2d4271f2e7c60bb3d60', # graphviz-5.0.0.tar.gz
+ '4cafb6eac6f59fa4e90cef6e83c276ad5e4e24b10992b18d4b51c6d28dfe4ca1', # Graphviz-5.0.0_skip-install-data-hook.patch
+]
+
+builddependencies = [
+ ('Autotools', '20220317'),
+ ('binutils', '2.38'),
+ ('Bison', '3.8.2'),
+ ('flex', '2.6.4'),
+ ('SWIG', '4.0.2'),
+ ('pkgconf', '1.8.0'),
+]
+
+dependencies = [
+ ('Java', '11', '', SYSTEM),
+ ('Python', '3.10.4'),
+ ('FriBidi', '1.0.12'),
+ ('Gdk-Pixbuf', '2.42.8'),
+ ('Ghostscript', '9.56.1'),
+ ('GTS', '0.7.6'),
+ ('libgd', '2.3.3'),
+ ('Pango', '1.50.7'),
+ ('Perl', '5.34.1'),
+ ('Qt5', '5.15.5'),
+ ('Tcl', '8.6.12'),
+ ('zlib', '1.2.12'),
+ ('bzip2', '1.0.8'),
+ ('libjpeg-turbo', '2.1.3'),
+ ('expat', '2.4.8'),
+]
+
+preconfigopts = './autogen.sh NOCONFIG && '
+
+configopts = '--enable-python%s=yes ' % local_pyver_major
+configopts += '--enable-guile=no --enable-lua=no --enable-ocaml=no '
+configopts += '--enable-r=no --enable-ruby=no --enable-php=no '
+# Use ltdl from libtool in EB
+configopts += '--enable-ltdl --without-included-ltdl --disable-ltdl-install '
+configopts += '--with-ltdl-include=$EBROOTLIBTOOL/include --with-ltdl-lib=$EBROOTLIBTOOL/lib '
+# Override the hardcoded paths to Java libraries
+configopts += '--with-javaincludedir=$JAVA_HOME/include --with-javaincludedir=$JAVA_HOME/include/linux '
+configopts += '--with-javalibdir=$JAVA_HOME/lib'
+configopts += '--with-expatincludedir=$EBROOTEXPAT/include --with-expatlibdir=$EBROOTEXPAT/lib'
+configopts += '--with-zincludedir=$EBROOTZLIB/include --with-zlibdir=$EBROOTZLIB/lib'
+
+prebuildopts = 'qmake -o cmd/gvedit/qMakefile cmd/gvedit/gvedit.pro && '
+
+postinstallcmds = ['%(installdir)s/bin/dot -c'] # Writes plugin configuration
+
+sanity_check_paths = {
+ 'files': ['bin/%s' % x for x in ['acyclic', 'bcomps', 'ccomps', 'cluster', 'diffimg', 'dijkstra', 'dot',
+ 'dot_builtins', 'edgepaint', 'gc', 'gml2gv', 'graphml2gv', 'gv2gml',
+ 'gvcolor', 'gvedit', 'gvgen', 'gvmap', 'gvmap.sh', 'gvpack', 'gvpr', 'gxl2gv',
+ 'neato', 'mm2gv', 'nop', 'prune', 'sccmap', 'tred', 'unflatten',
+ 'vimdot']] +
+ ['lib/%s.%s' % (x, SHLIB_EXT) for x in ['libcdt', 'libcgraph', 'libgvc', 'libgvpr', 'liblab_gamut',
+ 'libpathplan', 'libxdot']],
+ 'dirs': ['include', 'lib/graphviz', 'lib/graphviz/java', 'lib/graphviz/python%s' % local_pyver_major,
+ 'lib/pkgconfig', 'share']
+}
+
+sanity_check_commands = [
+ ("test ! -d $EBROOTTCL/lib/*/graphviz", ''),
+ ("test ! -d $EBROOTTCL/lib64/*/graphviz", ''),
+ ('python', '-c "import gv"'),
+]
+
+modextrapaths = {
+ 'CLASSPATH': 'lib/graphviz/java',
+ 'LD_LIBRARY_PATH': 'lib/graphviz/java',
+ 'PYTHONPATH': 'lib/graphviz/python%s' % local_pyver_major,
+ 'TCLLIBPATH': 'lib/graphviz/tcl',
+}
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/g/Graphviz/Graphviz-5.0.0_skip-install-data-hook.patch b/Golden_Repo/g/Graphviz/Graphviz-5.0.0_skip-install-data-hook.patch
new file mode 100644
index 0000000000000000000000000000000000000000..96c30b27410237690c1b56df33621dd530741f39
--- /dev/null
+++ b/Golden_Repo/g/Graphviz/Graphviz-5.0.0_skip-install-data-hook.patch
@@ -0,0 +1,96 @@
+don't create directories and install language bindings in non-owned directories
+author: Kenneth Hoste (HPC-UGent)
+update version 2.42.2: Alex Domingo (VUB)
+update version 5.0.0: Simon Pinches
+diff -Nru graphviz-5.0.0-orig/tclpkg/Makefile.am graphviz-5.0.0/tclpkg/Makefile.am
+--- graphviz-5.0.0-orig/tclpkg/Makefile.am 2022-07-07 17:40:57.000000000 +0200
++++ graphviz-5.0.0/tclpkg/Makefile.am 2022-08-09 11:38:18.162458502 +0200
+@@ -33,87 +33,7 @@
+ # ./configure --prefix=$HOME/graphviz; make; make install
+ # without root privileges.
+ install-data-hook:
+-if WITH_LUA
+- -mkdir -p $(DESTDIR)$(LUA_INSTALL_DIR);
+- if test -w $(DESTDIR)$(LUA_INSTALL_DIR); then \
+- (cd $(DESTDIR)$(LUA_INSTALL_DIR); \
+- cp -f $(DESTDIR)$(pkgluadir)/libgv_lua.so gv.so;) \
+- else \
+- echo "Warning: $(LUA_INSTALL_DIR) is not writable."; \
+- echo "Skipping system installation of lua binding."; \
+- fi
+-endif
+-if WITH_PERL
+- -mkdir -p $(DESTDIR)$(PERL_INSTALL_DIR);
+- if test -w $(DESTDIR)$(PERL_INSTALL_DIR); then \
+- (cd $(DESTDIR)$(PERL_INSTALL_DIR); \
+- cp -f $(DESTDIR)$(pkgperldir)/libgv_perl.so gv.so; \
+- cp -f $(DESTDIR)$(pkgperldir)/gv.pm gv.pm;) \
+- else \
+- echo "Warning: $(PERL_INSTALL_DIR) is not writable."; \
+- echo "Skipping system installation of perl binding."; \
+- fi
+-endif
+-if WITH_PHP
+- -mkdir -p $(DESTDIR)$(PHP_INSTALL_DIR);
+- if test -w $(DESTDIR)$(PHP_INSTALL_DIR); then \
+- (cd $(DESTDIR)$(PHP_INSTALL_DIR); \
+- cp -f $(DESTDIR)$(pkgphpdir)/libgv_php.so gv.so;) \
+- else \
+- echo "Warning: $(PHP_INSTALL_DIR) is not writable."; \
+- echo "Skipping system installation of php binding."; \
+- fi
+- -mkdir -p $(DESTDIR)$(PHP_INSTALL_DATADIR);
+- if test -w $(DESTDIR)$(PHP_INSTALL_DATADIR); then \
+- (cd $(DESTDIR)$(PHP_INSTALL_DATADIR); \
+- cp -f $(DESTDIR)$(pkgphpdir)/gv.php gv.php;) \
+- else \
+- echo "Warning: $(PHP_INSTALL_DATADIR) is not writable."; \
+- echo "Skipping system installation of php binding."; \
+- fi
+-endif
+-if WITH_PYTHON
+- -mkdir -p $(DESTDIR)$(PYTHON_INSTALL_DIR);
+- if test -w $(DESTDIR)$(PYTHON_INSTALL_DIR); then \
+- (cd $(DESTDIR)$(PYTHON_INSTALL_DIR); \
+- cp -f $(DESTDIR)$(pkgpythondir)/libgv_python.so _gv.so; \
+- cp -f $(DESTDIR)$(pkgpythondir)/gv.py gv.py;) \
+- else \
+- echo "Warning: $(PYTHON_INSTALL_DIR) is not writable."; \
+- echo "Skipping system installation of python binding."; \
+- fi
+-endif
+-if WITH_PYTHON3
+- -mkdir -p $(DESTDIR)$(PYTHON3_INSTALL_DIR);
+- if test -w $(DESTDIR)$(PYTHON3_INSTALL_DIR); then \
+- (cd $(DESTDIR)$(PYTHON3_INSTALL_DIR); \
+- cp -f $(DESTDIR)$(pkgpython3dir)/libgv_python3.so _gv.so; \
+- cp -f $(DESTDIR)$(pkgpython3dir)/gv.py gv.py;) \
+- else \
+- echo "Warning: $(PYTHON3_INSTALL_DIR) is not writable."; \
+- echo "Skipping system installation of python3 binding."; \
+- fi
+-endif
+-if WITH_RUBY
+- -mkdir -p $(DESTDIR)$(RUBY_INSTALL_DIR);
+- if test -w $(DESTDIR)$(RUBY_INSTALL_DIR); then \
+- (cd $(DESTDIR)$(RUBY_INSTALL_DIR); \
+- cp -f $(DESTDIR)$(pkgrubydir)/libgv_ruby.so gv.so;) \
+- else \
+- echo "Warning: $(RUBY_INSTALL_DIR) is not writable."; \
+- echo "Skipping system installation of ruby binding."; \
+- fi
+-endif
+-if WITH_TCL
+- -mkdir -p $(DESTDIR)$(TCL_INSTALL_DIR);
+- if test -w $(DESTDIR)$(TCL_INSTALL_DIR)/; then \
+- (cd $(DESTDIR)$(TCL_INSTALL_DIR); \
+- cp -rf $(DESTDIR)$(pkgtcldir) $(PACKAGE_NAME);) \
+- else \
+- echo "Warning: $(TCL_INSTALL_DIR) is not writable."; \
+- echo "Skipping system installation of tcl bindings."; \
+- fi
+-endif
++ echo "(installing in non-owned directories has been patched out)"
+ endif
+
+ # removal of installs into $(xxx_INSTALL_DIR) fail if root
diff --git a/Golden_Repo/g/g2clib/g2clib-1.7.0-GCCcore-11.3.0.eb b/Golden_Repo/g/g2clib/g2clib-1.7.0-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..539118743c8a78bdee01a0924555902091240a34
--- /dev/null
+++ b/Golden_Repo/g/g2clib/g2clib-1.7.0-GCCcore-11.3.0.eb
@@ -0,0 +1,32 @@
+name = 'g2clib'
+version = '1.7.0'
+easyblock = 'CMakeMake'
+
+homepage = 'https://github.com/NOAA-EMC/NCEPLIBS-g2c'
+description = """Library contains GRIB2 encoder/decoder ('C' version)."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/NOAA-EMC/NCEPLIBS-g2c/archive/refs/tags/']
+sources = ['v%(version)s.tar.gz']
+checksums = ['73afba9da382fed73ed8692d77fa037bb313280879cd4012a5e5697dccf55175']
+
+builddependencies = [('binutils', '2.38'),
+ ('CMake', '3.23.1'),
+ ]
+
+dependencies = [
+ ('JasPer', '2.0.33'),
+ ('libpng', '1.6.37'),
+ ('libjpeg-turbo', '2.1.3'),
+]
+
+parallel = 8
+
+sanity_check_paths = {
+ 'files': ['lib/libg2c.so'],
+ 'dirs': ['include', 'lib'],
+}
+
+moduleclass = 'data'
diff --git a/Golden_Repo/g/g2lib/g2lib-3.2.0-GCCcore-11.3.0.eb b/Golden_Repo/g/g2lib/g2lib-3.2.0-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..237239266b2ae0bbc1ae93dd4524228c5515d00c
--- /dev/null
+++ b/Golden_Repo/g/g2lib/g2lib-3.2.0-GCCcore-11.3.0.eb
@@ -0,0 +1,33 @@
+name = 'g2lib'
+version = '3.2.0'
+
+homepage = 'https://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/'
+description = """Library contains GRIB2 encoder/decoder and search/indexing routines."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = [homepage]
+sources = ['%(name)s-%(version)s.tar']
+patches = [
+ '%(name)s-%(version)s_makefile.patch',
+]
+checksums = [
+ '9d3866de32e13e80798bfb08dbbea9223f32cec3fce3c57b6838e76f27d5a1d3', # g2lib-3.2.0.tar
+ # g2lib-3.2.0_makefile.patch
+ 'e434394a6ec8bd68dbd57e3fdb44c47372b07380e362ed955bb038b78dd81812',
+]
+
+builddependencies = [('binutils', '2.38')]
+
+dependencies = [
+ ('JasPer', '2.0.33'),
+ ('libpng', '1.6.37'),
+]
+
+buildopts = 'CFLAGS="$CFLAGS -DLINUXG95 -D__64BIT__" FC=$FC CC=$CC '
+buildopts += 'FFLAGS="$FFLAGS -fno-range-check -fallow-invalid-boz -fallow-argument-mismatch -I."'
+
+# parallel build tends to fail
+parallel = 1
+
+moduleclass = 'data'
diff --git a/Golden_Repo/g/g2lib/g2lib-3.2.0_makefile.patch b/Golden_Repo/g/g2lib/g2lib-3.2.0_makefile.patch
new file mode 100644
index 0000000000000000000000000000000000000000..1841fa47e0f0185e7a3e4562b98986ef5a0d4d80
--- /dev/null
+++ b/Golden_Repo/g/g2lib/g2lib-3.2.0_makefile.patch
@@ -0,0 +1,40 @@
+# Author: maxim-masterov (SURF)
+# Based on: g2lib-3.1.0_makefile.patch by Samuel Moors (VUB)
+# Fixes order of compilation and indentation in the makefile
+diff -Nru g2lib-3.2.0.orig/makefile g2lib-3.2.0/makefile
+--- g2lib-3.2.0.orig/makefile 2021-08-20 11:12:18.401270276 +0200
++++ g2lib-3.2.0/makefile 2021-08-20 11:16:07.212439526 +0200
+@@ -171,6 +171,7 @@
+ .SUFFIXES: .a .f .F .c
+
+ $(LIB): $(LIB)(gridtemplates.o) \
++ $(LIB)(intmath.o) \
+ $(LIB)(pdstemplates.o) \
+ $(LIB)(drstemplates.o) \
+ $(LIB)(gribmod.o) \
+@@ -182,7 +183,6 @@
+ $(LIB)(gb_info.o) \
+ $(LIB)(gf_getfld.o) \
+ $(LIB)(gf_free.o) \
+- $(LIB)(intmath.o) \
+ $(LIB)(gf_unpack1.o) \
+ $(LIB)(gf_unpack2.o) \
+ $(LIB)(gf_unpack3.o) \
+@@ -217,7 +217,7 @@
+ $(LIB)(pngunpack.o) \
+ $(LIB)(enc_png.o) \
+ $(LIB)(dec_png.o) \
+- $(LIB)(mova2i.o) \
++ $(LIB)(mova2i.o) \
+ $(LIB)(g2_gbytesc.o) \
+ $(LIB)(skgb.o) \
+ $(LIB)(ixgb2.o) \
+@@ -232,7 +232,7 @@
+ $(LIB)(putgb2.o) \
+ $(LIB)(g2grids.o) \
+ $(LIB)(params.o) \
+- $(LIB)(params_ecmwf.o) \
++ $(LIB)(params_ecmwf.o) \
+ $(LIB)(getidx.o) \
+ $(LIB)(gdt2gds.o)
+
diff --git a/Golden_Repo/g/gflags/gflags-2.2.2-GCCcore-11.3.0.eb b/Golden_Repo/g/gflags/gflags-2.2.2-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..a403ff66dbb845c98cd6d344e4a446df6608a005
--- /dev/null
+++ b/Golden_Repo/g/gflags/gflags-2.2.2-GCCcore-11.3.0.eb
@@ -0,0 +1,35 @@
+easyblock = 'CMakeMake'
+
+name = 'gflags'
+version = '2.2.2'
+
+homepage = 'https://gflags.github.io/gflags'
+description = """
+The gflags package contains a C++ library that implements commandline flags
+processing. It includes built-in support for standard types such as string
+and the ability to define flags in the source file in which they are used.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/gflags/gflags/archive/']
+sources = ['v%(version)s.tar.gz']
+checksums = ['34af2f15cf7367513b352bdcd2493ab14ce43692d2dcd9dfc499492966c64dcf']
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('CMake', '3.23.1'),
+]
+
+configopts = '-DBUILD_SHARED_LIBS=on -DBUILD_STATIC_LIBS=on'
+
+sanity_check_paths = {
+ 'files': ['bin/gflags_completions.sh'] +
+ ['lib/%s' % x for x in ['libgflags.%s' % SHLIB_EXT, 'libgflags_nothreads.%s' % SHLIB_EXT,
+ 'libgflags.a', 'libgflags_nothreads.a']] +
+ ['include/gflags/gflags_completions.h'],
+ 'dirs': [],
+}
+
+moduleclass = 'devel'
diff --git a/Golden_Repo/g/gpsmkl/gpsmkl-2022a.eb b/Golden_Repo/g/gpsmkl/gpsmkl-2022a.eb
index 2d87d17eaf5b8c4ca26bd5ccc0ad066fe61ab963..fff6c24e8961b5ebf09645e224923ccb2be2cacb 100644
--- a/Golden_Repo/g/gpsmkl/gpsmkl-2022a.eb
+++ b/Golden_Repo/g/gpsmkl/gpsmkl-2022a.eb
@@ -18,7 +18,7 @@ local_mkl_ver = '2022.1.0'
# compiler toolchain dependencies
dependencies = [
local_compiler,
- ('psmpi', '5.6.0-1', '', local_compiler), # part of gpsmpi toolchain
+ ('psmpi', '5.7.0-1', '', local_compiler), # part of gpsmpi toolchain
('imkl', local_mkl_ver, '', SYSTEM),
('imkl-FFTW', local_mkl_ver, '', local_comp_mpi_tc),
]
diff --git a/Golden_Repo/g/gpsmpi/gpsmpi-2022a.eb b/Golden_Repo/g/gpsmpi/gpsmpi-2022a.eb
index ab322c08273e22a22a3467c2b67e1579155a295d..41208be4cce57a0eda22b45e2f270a29ffccc745 100644
--- a/Golden_Repo/g/gpsmpi/gpsmpi-2022a.eb
+++ b/Golden_Repo/g/gpsmpi/gpsmpi-2022a.eb
@@ -13,7 +13,7 @@ local_compiler = ('GCC', '11.3.0')
dependencies = [
local_compiler,
- ('psmpi', '5.6.0-1', '', local_compiler),
+ ('psmpi', '5.7.0-1', '', local_compiler),
]
moduleclass = 'toolchain'
diff --git a/Golden_Repo/h/HTSlib/HTSlib-1.15.1-GCC-11.3.0.eb b/Golden_Repo/h/HTSlib/HTSlib-1.15.1-GCC-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..bb7636b2af032dc98b8a01138127c4c4261116cb
--- /dev/null
+++ b/Golden_Repo/h/HTSlib/HTSlib-1.15.1-GCC-11.3.0.eb
@@ -0,0 +1,39 @@
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+# Author: Pablo Escobar Lopez
+# Swiss Institute of Bioinformatics
+# Biozentrum - University of Basel
+# 1.4 modified by:
+# Adam Huffman, Jonas Demeulemeester
+# The Francis Crick Institute
+# Updated to 1.14
+# J. Sassmannshausen /GSTT
+
+easyblock = 'ConfigureMake'
+
+name = 'HTSlib'
+version = '1.15.1'
+
+homepage = "https://www.htslib.org/"
+description = """A C library for reading/writing high-throughput sequencing data.
+ This package includes the utilities bgzip and tabix"""
+
+toolchain = {'name': 'GCC', 'version': '11.3.0'}
+
+source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s/']
+sources = [SOURCELOWER_TAR_BZ2]
+checksums = ['8d7f8bf9658226942eeab70af2a22aca618577eaa8fe2ed9416ee306d5351aa1']
+
+# cURL added for S3 support
+dependencies = [
+ ('zlib', '1.2.12'),
+ ('bzip2', '1.0.8'),
+ ('XZ', '5.2.5'),
+ ('cURL', '7.83.0'),
+]
+
+sanity_check_paths = {
+ 'files': ['bin/bgzip', 'bin/tabix', 'lib/libhts.%s' % SHLIB_EXT],
+ 'dirs': [],
+}
+
+moduleclass = 'bio'
diff --git a/Golden_Repo/h/Harminv/Harminv-1.4.1-intel-para-2022a.eb b/Golden_Repo/h/Harminv/Harminv-1.4.1-intel-para-2022a.eb
new file mode 100644
index 0000000000000000000000000000000000000000..d26e648c97ca36589c8eaecdf3e18a59661c1e82
--- /dev/null
+++ b/Golden_Repo/h/Harminv/Harminv-1.4.1-intel-para-2022a.eb
@@ -0,0 +1,22 @@
+easyblock = 'ConfigureMake'
+
+name = 'Harminv'
+version = '1.4.1'
+
+homepage = 'http://ab-initio.mit.edu/wiki/index.php/Harminv'
+description = """
+Harminv is a free program (and accompanying library) to solve the problem of harmonic inversion - given a discrete-time,
+finite-length signal that consists of a sum of finitely-many sinusoids (possibly exponentially decaying) in a given
+bandwidth, it determines the frequencies, decay constants, amplitudes, and phases of those sinusoids.
+"""
+
+toolchain = {'name': 'intel-para', 'version': '2022a'}
+toolchainopts = {'opt': True, 'unroll': True, 'optarch': True, 'pic': True, 'cstd': 'c99'}
+
+source_urls = ['https://github.com/stevengj/harminv/releases/download/v%(version)s/']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['e1b923c508a565f230aac04e3feea23b888b47d8e19b08816a97ee4444233670'] # v1.4.1.tar.gz
+
+configopts = "--with-pic --with-blas=mkl_em64t --with-lapack=mkl_em64t --enable-shared"
+
+moduleclass = 'math'
diff --git a/Golden_Repo/hidden_deps.txt b/Golden_Repo/hidden_deps.txt
index d05bba69e625c252472cf8c6cd3ebc2726337035..c9df03a99156990aa67f5944739e66dd3d8960d7 100644
--- a/Golden_Repo/hidden_deps.txt
+++ b/Golden_Repo/hidden_deps.txt
@@ -92,6 +92,7 @@ PnMPI
PyCairo
PyGObject
Python-Xpra
+pretty-yaml
Qhull
Qt
Qt5
diff --git a/Golden_Repo/i/ImageMagick/ImageMagick-7.1.0-37-GCCcore-11.3.0.eb b/Golden_Repo/i/ImageMagick/ImageMagick-7.1.0-37-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..f4a6a273ca9f8aef823176726c4527dd158c21ac
--- /dev/null
+++ b/Golden_Repo/i/ImageMagick/ImageMagick-7.1.0-37-GCCcore-11.3.0.eb
@@ -0,0 +1,41 @@
+easyblock = 'ConfigureMake'
+
+name = 'ImageMagick'
+version = '7.1.0-37'
+
+homepage = 'https://www.imagemagick.org/'
+description = """ImageMagick is a software suite to create, edit, compose, or convert bitmap images"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://github.com/ImageMagick/ImageMagick/archive/']
+sources = ['%(version)s.tar.gz']
+checksums = ['a54888a1a46dbb808705a3e6c6b5ecb93ee30189a8ae6ea0f02300a0ab0d0996']
+
+dependencies = [
+ ('bzip2', '1.0.8'),
+ ('X11', '20220504'),
+ ('Ghostscript', '9.56.1'),
+ ('JasPer', '2.0.33'),
+ ('libjpeg-turbo', '2.1.3'),
+ ('LibTIFF', '4.3.0'),
+ ('LittleCMS', '2.13.1'),
+ ('Pango', '1.50.7'),
+]
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('pkgconf', '1.8.0'),
+]
+
+configopts = "--with-gslib --with-x"
+
+sanity_check_paths = {
+ 'files': [],
+ 'dirs': ['bin', 'etc/%(name)s-%(version_major)s',
+ 'include/%(name)s-%(version_major)s', 'lib', 'share'],
+}
+
+modextravars = {'MAGICK_HOME': '%(installdir)s'}
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/i/intel-para/intel-para-2022a.eb b/Golden_Repo/i/intel-para/intel-para-2022a.eb
index 2e442a256382ae0833c889068570dd4035253e64..8f74fd6408f645655e79aa701ba06a56fbfe5d59 100644
--- a/Golden_Repo/i/intel-para/intel-para-2022a.eb
+++ b/Golden_Repo/i/intel-para/intel-para-2022a.eb
@@ -18,7 +18,7 @@ local_comp_mpi_tc = ('ipsmpi', version)
dependencies = [
local_compiler,
- ('psmpi', '5.6.0-1', '', local_compiler),
+ ('psmpi', '5.7.0-1', '', local_compiler),
('imkl', local_comp_ver, '', SYSTEM),
('imkl-FFTW', local_comp_ver, '', local_comp_mpi_tc),
]
diff --git a/Golden_Repo/i/ipsmpi/ipsmpi-2022a.eb b/Golden_Repo/i/ipsmpi/ipsmpi-2022a.eb
index 61a1d65ff9fe77bc6ed361cf9ba892a20c665717..69a24d0030ea6e0d5e9ad0c84143bbedc1877266 100644
--- a/Golden_Repo/i/ipsmpi/ipsmpi-2022a.eb
+++ b/Golden_Repo/i/ipsmpi/ipsmpi-2022a.eb
@@ -12,7 +12,7 @@ local_comp_ver = '2022.1.0'
local_compiler = ('intel-compilers', local_comp_ver)
dependencies = [
local_compiler,
- ('psmpi', '5.6.0-1', '', local_compiler),
+ ('psmpi', '5.7.0-1', '', local_compiler),
]
moduleclass = 'toolchain'
diff --git a/Golden_Repo/l/LittleCMS/LittleCMS-2.13.1-GCCcore-11.3.0.eb b/Golden_Repo/l/LittleCMS/LittleCMS-2.13.1-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..fd89cefd7afdd35252b498fb27e0f4cbe61012f8
--- /dev/null
+++ b/Golden_Repo/l/LittleCMS/LittleCMS-2.13.1-GCCcore-11.3.0.eb
@@ -0,0 +1,26 @@
+easyblock = 'ConfigureMake'
+
+name = 'LittleCMS'
+version = '2.13.1'
+
+homepage = 'https://www.littlecms.com/'
+description = """ Little CMS intends to be an OPEN SOURCE small-footprint color management engine,
+ with special focus on accuracy and performance. """
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://sourceforge.net/projects/lcms/files/lcms/%s/' % '.'.join(version.split('.')[:2])]
+sources = ['lcms2-%(version)s.tar.gz']
+checksums = ['d473e796e7b27c5af01bd6d1552d42b45b43457e7182ce9903f38bb748203b88']
+
+builddependencies = [('binutils', '2.38')]
+
+dependencies = [('libjpeg-turbo', '2.1.3')]
+
+sanity_check_paths = {
+ 'files': ['bin/jpgicc', 'bin/linkicc', 'bin/psicc', 'bin/transicc', 'include/lcms2.h', 'include/lcms2_plugin.h',
+ 'lib/liblcms2.a', 'lib/liblcms2.%s' % SHLIB_EXT, 'lib/pkgconfig/lcms2.pc'],
+ 'dirs': ['share/man'],
+}
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/l/libGLU/libGLU-9.0.2-GCCcore-11.3.0.eb b/Golden_Repo/l/libGLU/libGLU-9.0.2-GCCcore-11.3.0.eb
deleted file mode 100644
index 9886450f02c38fc686ddebd3ee65b1591373bdd2..0000000000000000000000000000000000000000
--- a/Golden_Repo/l/libGLU/libGLU-9.0.2-GCCcore-11.3.0.eb
+++ /dev/null
@@ -1,27 +0,0 @@
-easyblock = 'ConfigureMake'
-
-name = 'libGLU'
-version = '9.0.2'
-
-homepage = 'https://mesa.freedesktop.org/archive/glu/'
-description = """The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. """
-
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
-toolchainopts = {'pic': True}
-
-source_urls = ['https://mesa.freedesktop.org/archive/glu/']
-sources = ['glu-%(version)s.tar.gz']
-checksums = ['24effdfb952453cc00e275e1c82ca9787506aba0282145fff054498e60e19a65']
-
-builddependencies = [('binutils', '2.38')]
-
-dependencies = [
- ('OpenGL', '2022a'),
-]
-
-sanity_check_paths = {
- 'files': ['lib/libGLU.%s' % SHLIB_EXT],
- 'dirs': [],
-}
-
-moduleclass = 'vis'
diff --git a/Golden_Repo/l/libaec/libaec-1.0.6-GCCcore-11.3.0.eb b/Golden_Repo/l/libaec/libaec-1.0.6-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..3dcfe8298617c13cf960f7eead3fc5146d843e03
--- /dev/null
+++ b/Golden_Repo/l/libaec/libaec-1.0.6-GCCcore-11.3.0.eb
@@ -0,0 +1,33 @@
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+# Author: Denis Kristak
+easyblock = 'CMakeMake'
+
+name = 'libaec'
+version = '1.0.6'
+
+homepage = 'https://gitlab.dkrz.de/k202009/libaec'
+description = """Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers
+(samples). The library achieves best results for low entropy data as often encountered in space imaging
+instrument data or numerical model output from weather or climate simulations. While floating point representations
+are not directly supported, they can also be efficiently coded by grouping exponents and mantissa."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = [
+ 'https://gitlab.dkrz.de/k202009/%(namelower)s/-/archive/v%(version)s']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['abab8c237d85c982bb4d6bde9b03c1f3d611dcacbd58bca55afac2496d61d4be']
+
+builddependencies = [
+ ('CMake', '3.23.1'),
+ ('binutils', '2.38'),
+]
+
+sanity_check_paths = {
+ 'files': ['bin/aec', 'include/libaec.h', 'include/szlib.h', 'lib/libaec.a', 'lib/libaec.%s' % SHLIB_EXT],
+ 'dirs': ['share/man'],
+}
+
+sanity_check_commands = ["aec --help"]
+
+moduleclass = 'lib'
diff --git a/Golden_Repo/l/libctl/libctl-4.5.1-GCC-11.3.0.eb b/Golden_Repo/l/libctl/libctl-4.5.1-GCC-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..94a840f66be87fbaa868ef92c13858682b2c2227
--- /dev/null
+++ b/Golden_Repo/l/libctl/libctl-4.5.1-GCC-11.3.0.eb
@@ -0,0 +1,21 @@
+easyblock = 'ConfigureMake'
+name = 'libctl'
+version = '4.5.1'
+
+homepage = 'http://ab-initio.mit.edu/libctl'
+description = """libctl is a free Guile-based library implementing flexible control files for scientific simulations."""
+
+toolchain = {'name': 'GCC', 'version': '11.3.0'}
+toolchainopts = {'optarch': True}
+
+source_urls = ['https://github.com/NanoComp/libctl/releases/download/v%(version)s/']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['fcfeb2f13dda05b560f0ec6872757d9318fdfe8f4bc587eb2053a29ba328ae25'] # libctl-4.5.1.tar.gz
+
+dependencies = [
+ ('Guile', '3.0.8')
+]
+
+configopts = '--enable-shared '
+
+moduleclass = 'chem'
diff --git a/Golden_Repo/l/libctl/libctl-4.5.1-intel-compilers-2022.1.0.eb b/Golden_Repo/l/libctl/libctl-4.5.1-intel-compilers-2022.1.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..280ea563f141bb10ab9533b2a6f04e8a6dbbf581
--- /dev/null
+++ b/Golden_Repo/l/libctl/libctl-4.5.1-intel-compilers-2022.1.0.eb
@@ -0,0 +1,21 @@
+easyblock = 'ConfigureMake'
+name = 'libctl'
+version = '4.5.1'
+
+homepage = 'http://ab-initio.mit.edu/libctl'
+description = """libctl is a free Guile-based library implementing flexible control files for scientific simulations."""
+
+toolchain = {'name': 'intel-compilers', 'version': '2022.1.0'}
+toolchainopts = {'optarch': True}
+
+source_urls = ['https://github.com/NanoComp/libctl/releases/download/v%(version)s/']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['fcfeb2f13dda05b560f0ec6872757d9318fdfe8f4bc587eb2053a29ba328ae25'] # libctl-4.5.1.tar.gz
+
+dependencies = [
+ ('Guile', '3.0.8')
+]
+
+configopts = '--enable-shared '
+
+moduleclass = 'chem'
diff --git a/Golden_Repo/l/libvdwxc/libvdwxc-0.4.0-foss-2022a.eb b/Golden_Repo/l/libvdwxc/libvdwxc-0.4.0-foss-2022a.eb
new file mode 100644
index 0000000000000000000000000000000000000000..f92e6bb75a7b8aa82998b5dfd820faac7b9def10
--- /dev/null
+++ b/Golden_Repo/l/libvdwxc/libvdwxc-0.4.0-foss-2022a.eb
@@ -0,0 +1,27 @@
+easyblock = 'ConfigureMake'
+
+name = 'libvdwxc'
+version = '0.4.0'
+
+homepage = 'https://libvdwxc.org'
+description = """libvdwxc is a general library for evaluating energy and potential for
+exchange-correlation (XC) functionals from the vdW-DF family that can be used with various
+of density functional theory (DFT) codes."""
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+source_urls = ['https://launchpad.net/libvdwxc/stable/%(version)s/+download/']
+sources = [SOURCE_TAR_GZ]
+checksums = ['3524feb5bb2be86b4688f71653502146b181e66f3f75b8bdaf23dd1ae4a56b33']
+
+preconfigopts = 'unset CC && unset FC && '
+
+sanity_check_paths = {
+ 'files': ['bin/%s' % x for x in ['libvdwxc_fdtest', 'libvdwxc_maintest',
+ 'libvdwxc_q0test', 'libvdwxc_q0test2']] +
+ ['lib/lib%s.%s' % (x, y) for x in ['vdwxc', 'vdwxcfort']
+ for y in ['a', SHLIB_EXT]],
+ 'dirs': ['include'],
+}
+
+moduleclass = 'chem'
diff --git a/Golden_Repo/l/libvips/libvips-8.13.3-foss-2022a.eb b/Golden_Repo/l/libvips/libvips-8.13.3-foss-2022a.eb
new file mode 100644
index 0000000000000000000000000000000000000000..832666ae2cf1d743a72ff88ad447e4b403fb9b9b
--- /dev/null
+++ b/Golden_Repo/l/libvips/libvips-8.13.3-foss-2022a.eb
@@ -0,0 +1,40 @@
+easyblock = 'ConfigureMake'
+
+name = 'libvips'
+version = '8.13.3'
+
+homepage = 'https://libvips.github.io/libvips/'
+description = """libvips is a demand-driven, horizontally threaded image processing library."""
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+github_account = 'libvips'
+source_urls = ['https://github.com/libvips/libvips/releases/download/v%(version)s']
+sources = ['vips-%(version)s.tar.gz']
+checksums = [None]
+
+builddependencies = [
+ ('pkgconf', '1.8.0'),
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('libpng', '1.6.37'),
+ ('libjpeg-turbo', '2.1.3'),
+ ('LibTIFF', '4.3.0'),
+ ('giflib', '5.2.1'),
+ ('FFTW', '3.3.10', '', ('GCC', '11.3.0')),
+ ('GLib', '2.72.1'),
+ ('expat', '2.4.8'),
+ ('librsvg', '2.55.1'),
+ ('ImageMagick', '7.1.0-37'),
+ ('OpenSlide', '3.4.1', '-largefiles'),
+]
+
+sanity_check_paths = {
+ 'files': ['bin/vips', 'bin/batch_image_convert', 'bin/vipsthumbnail',
+ 'lib/libvips.%s' % SHLIB_EXT],
+ 'dirs': ['include/vips']
+}
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/l/libwebp/libwebp-1.2.4-GCCcore-11.3.0.eb b/Golden_Repo/l/libwebp/libwebp-1.2.4-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..0c0b2fbef392c688525944ddb6cd68ae06b163ab
--- /dev/null
+++ b/Golden_Repo/l/libwebp/libwebp-1.2.4-GCCcore-11.3.0.eb
@@ -0,0 +1,44 @@
+easyblock = 'ConfigureMake'
+
+name = 'libwebp'
+version = '1.2.4'
+
+homepage = 'https://developers.google.com/speed/webp/'
+description = """WebP is a modern image format that provides superior
+lossless and lossy compression for images on the web. Using WebP,
+webmasters and web developers can create smaller, richer images that
+make the web faster."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://storage.googleapis.com/downloads.webmproject.org/releases/webp']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['7bf5a8a28cc69bcfa8cb214f2c3095703c6b73ac5fba4d5480c205331d9494df']
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+dependencies = [
+ ('libjpeg-turbo', '2.1.3'),
+ ('libpng', '1.6.37'),
+ ('LibTIFF', '4.3.0'),
+ ('giflib', '5.2.1'),
+]
+
+configopts = '--enable-libwebpmux'
+
+local_headers, local_libs = (
+ ['decode.h', 'demux.h', 'encode.h', 'mux.h', 'mux_types.h', 'types.h'],
+ ['webp', 'webpdemux', 'webpmux']
+)
+
+sanity_check_paths = {
+ 'files': (
+ ['include/webp/%s' % h for h in local_headers] +
+ ['lib/lib%s.a' % s for s in local_libs] +
+ ['lib/lib%s.%s' % (s, SHLIB_EXT) for s in local_libs]
+ ),
+ 'dirs': ['lib/']
+}
+
+moduleclass = 'lib'
diff --git a/Golden_Repo/m/motif/motif-2.3.8-GCCcore-11.3.0.eb b/Golden_Repo/m/motif/motif-2.3.8-GCCcore-11.3.0.eb
deleted file mode 100644
index 8f4a300dbef6daa77bb21726b9fe4343d2320bcb..0000000000000000000000000000000000000000
--- a/Golden_Repo/m/motif/motif-2.3.8-GCCcore-11.3.0.eb
+++ /dev/null
@@ -1,41 +0,0 @@
-easyblock = 'ConfigureMake'
-
-name = 'motif'
-version = '2.3.8'
-
-homepage = 'https://motif.ics.com/'
-description = """Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building
- applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems.
- It was the standard toolkit for the Common Desktop Environment and thus for Unix."""
-
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
-
-source_urls = [SOURCEFORGE_SOURCE]
-sources = ['%(name)s-%(version)s.tar.gz']
-checksums = ['859b723666eeac7df018209d66045c9853b50b4218cecadb794e2359619ebce7']
-
-builddependencies = [
- ('Autotools', '20220317'),
- ('flex', '2.6.4'),
- ('Bison', '3.8.2'),
- ('binutils', '2.38'),
- ('util-linux', '2.38'),
-]
-
-dependencies = [
- ('X11', '20220504'),
- ('libpng', '1.6.37'),
- ('freetype', '2.12.1'),
- ('libjpeg-turbo', '2.1.3'),
- ('bzip2', '1.0.8'),
-]
-
-# makefile is not parallel safe
-parallel = 1
-
-sanity_check_paths = {
- 'files': ['lib/libMrm.a', 'lib/libUil.a', 'lib/libXm.a', 'bin/mwm', 'bin/uil', 'bin/xmbind'],
- 'dirs': ['include/Mrm', 'include/uil', 'include/X11', 'include/Xm'],
-}
-
-moduleclass = 'vis'
diff --git a/Golden_Repo/m/mpiP/mpiP-3.5-gompi-2022a.eb b/Golden_Repo/m/mpiP/mpiP-3.5-gompi-2022a.eb
new file mode 100644
index 0000000000000000000000000000000000000000..6bcfae6baa4f6efd17d8e5290c428bb55626f97b
--- /dev/null
+++ b/Golden_Repo/m/mpiP/mpiP-3.5-gompi-2022a.eb
@@ -0,0 +1,44 @@
+easyblock = 'ConfigureMake'
+version = '3.5'
+
+homepage = 'https://github.com/LLNL/mpiP'
+name = "mpiP"
+
+description = """mpiP is a lightweight profiling library for MPI applications. Because it only collects statistical
+information about MPI functions, mpiP generates considerably less overhead and much less data than tracing tools. All
+the information captured by mpiP is task-local. It only uses communication during report generation, typically at the
+end of the experiment, to merge results from all of the tasks into one output file.
+"""
+
+usage = """
+ Example usage (take special note of the order, the mpiP library has to appear AFTER your code):
+
+ mpifort -g -o mpitest mpitest.f90 -lmpiP -lm -lbfd -liberty -lunwind -lz
+"""
+
+
+toolchain = {'name': 'gompi', 'version': '2022a'}
+toolchainopts = {'usempi': True}
+
+source_urls = ['https://github.com/LLNL/mpiP/releases/download/%(version)s/']
+sources = [SOURCELOWER_TGZ]
+checksums = ['e366843d53fa016fb03903e51c8aac901aa5155edabe64698a8d6fa618a03bbd']
+
+builddependencies = [
+ ('Python', '3.10.4'),
+]
+
+dependencies = [
+ ('libunwind', '1.6.2'),
+]
+
+configopts = "--with-cc=$CC --with-cxx=$CXX --with-f77=$F77 CFLAGS='-DPACKAGE=mpiP -DPACKAGE_VERSION=3.5' "
+
+buildopts = "PACKAGE='mpiP' PACKAGE_VERSION='3.5'"
+
+sanity_check_paths = {
+ 'files': ['lib/libmpiP.so'],
+ 'dirs': ['lib', 'share']
+}
+
+moduleclass = 'perf'
diff --git a/Golden_Repo/m/mpiP/mpiP-3.5-gpsmpi-2022a.eb b/Golden_Repo/m/mpiP/mpiP-3.5-gpsmpi-2022a.eb
new file mode 100644
index 0000000000000000000000000000000000000000..c0abdc72807c691c7ecf534d3568109bb1eb04ca
--- /dev/null
+++ b/Golden_Repo/m/mpiP/mpiP-3.5-gpsmpi-2022a.eb
@@ -0,0 +1,44 @@
+easyblock = 'ConfigureMake'
+version = '3.5'
+
+homepage = 'https://github.com/LLNL/mpiP'
+name = "mpiP"
+
+description = """mpiP is a lightweight profiling library for MPI applications. Because it only collects statistical
+information about MPI functions, mpiP generates considerably less overhead and much less data than tracing tools. All
+the information captured by mpiP is task-local. It only uses communication during report generation, typically at the
+end of the experiment, to merge results from all of the tasks into one output file.
+"""
+
+usage = """
+ Example usage (take special note of the order, the mpiP library has to appear AFTER your code):
+
+ mpifort -g -o mpitest mpitest.f90 -lmpiP -lm -lbfd -liberty -lunwind -lz
+"""
+
+
+toolchain = {'name': 'gpsmpi', 'version': '2022a'}
+toolchainopts = {'usempi': True}
+
+source_urls = ['https://github.com/LLNL/mpiP/releases/download/%(version)s/']
+sources = [SOURCELOWER_TGZ]
+checksums = ['e366843d53fa016fb03903e51c8aac901aa5155edabe64698a8d6fa618a03bbd']
+
+builddependencies = [
+ ('Python', '3.10.4'),
+]
+
+dependencies = [
+ ('libunwind', '1.6.2'),
+]
+
+configopts = "--with-cc=$CC --with-cxx=$CXX --with-f77=$F77 CFLAGS='-DPACKAGE=mpiP -DPACKAGE_VERSION=3.5' "
+
+buildopts = "PACKAGE='mpiP' PACKAGE_VERSION='3.5'"
+
+sanity_check_paths = {
+ 'files': ['lib/libmpiP.so'],
+ 'dirs': ['lib', 'share']
+}
+
+moduleclass = 'perf'
diff --git a/Golden_Repo/n/NLopt/NLopt-2.7.1-GCCcore-11.3.0.eb b/Golden_Repo/n/NLopt/NLopt-2.7.1-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..e9b6611e0603dd429e30699025388cb499e044c6
--- /dev/null
+++ b/Golden_Repo/n/NLopt/NLopt-2.7.1-GCCcore-11.3.0.eb
@@ -0,0 +1,33 @@
+easyblock = 'CMakeMake'
+
+name = 'NLopt'
+version = '2.7.1'
+
+homepage = 'http://ab-initio.mit.edu/wiki/index.php/NLopt'
+description = """ NLopt is a free/open-source library for nonlinear optimization,
+ providing a common interface for a number of different free optimization routines
+ available online as well as original implementations of various other algorithms. """
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/stevengj/nlopt/archive']
+sources = ['v%(version)s.tar.gz']
+checksums = ['db88232fa5cef0ff6e39943fc63ab6074208831dc0031cf1545f6ecd31ae2a1a']
+
+builddependencies = [
+ ('CMake', '3.23.1'),
+ ('binutils', '2.38'),
+]
+
+configopts = [
+ '-DBUILD_SHARED_LIBS=ON',
+ '-DBUILD_SHARED_LIBS=OFF'
+]
+
+sanity_check_paths = {
+ 'files': ['lib/libnlopt.a', 'lib/libnlopt.%s' % SHLIB_EXT, 'include/nlopt.h'],
+ 'dirs': ['lib/pkgconfig'],
+}
+
+moduleclass = 'numlib'
diff --git a/Golden_Repo/n/ncview/ncview-2.1.8-GCCcore-11.3.0.eb b/Golden_Repo/n/ncview/ncview-2.1.8-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..0f38a258ea5856495f0768259c9ad6305ba82356
--- /dev/null
+++ b/Golden_Repo/n/ncview/ncview-2.1.8-GCCcore-11.3.0.eb
@@ -0,0 +1,41 @@
+easyblock = 'ConfigureMake'
+
+name = 'ncview'
+
+version = "2.1.8"
+
+homepage = 'http://meteora.ucsd.edu/~pierce/ncview_home_page.html'
+description = """Ncview is a visual browser for netCDF format files.
+Typically you would use ncview to get a quick and easy, push-button
+look at your netCDF files. You can view simple movies of the data,
+view along various dimensions, take a look at the actual data values,
+change color maps, invert the data, etc."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['ftp://cirrus.ucsd.edu/pub/ncview/']
+sources = [SOURCE_TAR_GZ]
+checksums = ['e8badc507b9b774801288d1c2d59eb79ab31b004df4858d0674ed0d87dfc91be']
+
+preconfigopts = 'CC=$(which $CC) '
+configopts = '--with-udunits2_incdir=$EBROOTUDUNITS/include --with-udunits2_libdir=$EBROOTUDUNITS/lib '
+configopts += '--with-png_libdir=$EBROOTLIBPNG/lib --with-png_incdir=$EBROOTLIBPNG/include'
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('netCDF', '4.9.0', '-serial'),
+ ('UDUNITS', '2.2.28'),
+ ('X11', '20220504'),
+ ('libpng', '1.6.37'),
+ ('zlib', '1.2.12'),
+]
+
+sanity_check_paths = {
+ 'files': ['bin/ncview'],
+ 'dirs': [],
+}
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/n/netCDF-C++4/netCDF-C++4-4.3.1-GCCcore-11.3.0-serial.eb b/Golden_Repo/n/netCDF-C++4/netCDF-C++4-4.3.1-GCCcore-11.3.0-serial.eb
new file mode 100644
index 0000000000000000000000000000000000000000..b74320143b6ff91c0ce9535c28864fe9e2048d81
--- /dev/null
+++ b/Golden_Repo/n/netCDF-C++4/netCDF-C++4-4.3.1-GCCcore-11.3.0-serial.eb
@@ -0,0 +1,28 @@
+easyblock = 'ConfigureMake'
+
+name = 'netCDF-C++4'
+version = '4.3.1'
+versionsuffix = '-serial'
+
+homepage = 'http://www.unidata.ucar.edu/software/netcdf/'
+description = """NetCDF (network Common Data Form) is a set of software libraries
+ and machine-independent data formats that support the creation, access, and sharing
+ of array-oriented scientific data.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/Unidata/netcdf-cxx4/archive/']
+sources = ['v%(version)s.tar.gz']
+checksums = ['e3fe3d2ec06c1c2772555bf1208d220aab5fee186d04bd265219b0bc7a978edc']
+
+builddependencies = [('binutils', '2.38')]
+dependencies = [('netCDF', '4.9.0', '-serial')]
+
+sanity_check_paths = {
+ 'files': ['include/netcdf', 'lib/libnetcdf_c++4.a', 'lib/libnetcdf_c++4.%s' % SHLIB_EXT],
+ 'dirs': [],
+}
+
+moduleclass = 'data'
diff --git a/Golden_Repo/n/netCDF-Fortran/netCDF-Fortran-4.6.0-GCCcore-11.3.0-serial.eb b/Golden_Repo/n/netCDF-Fortran/netCDF-Fortran-4.6.0-GCCcore-11.3.0-serial.eb
new file mode 100644
index 0000000000000000000000000000000000000000..454690281771c0b72a7edac835fb70db99dc6d25
--- /dev/null
+++ b/Golden_Repo/n/netCDF-Fortran/netCDF-Fortran-4.6.0-GCCcore-11.3.0-serial.eb
@@ -0,0 +1,28 @@
+name = 'netCDF-Fortran'
+version = '4.6.0'
+versionsuffix = '-serial'
+
+homepage = 'http://www.unidata.ucar.edu/software/netcdf/'
+description = """NetCDF (network Common Data Form) is a set of software libraries
+ and machine-independent data formats that support the creation, access, and sharing of array-oriented
+ scientific data.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/Unidata/netcdf-fortran/archive/']
+sources = ['v%(version)s.tar.gz']
+checksums = ['8194aa70e400c0adfc456127c1d97af2c6489207171d13b10cd754a16da8b0ca']
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('M4', '1.4.19'),
+]
+
+dependencies = [('netCDF', '4.9.0', '-serial')]
+
+# (too) parallel build fails, but single-core build is fairly quick anyway (~1min)
+parallel = 1
+
+moduleclass = 'data'
diff --git a/Golden_Repo/n/netCDF4-python/netcdf4-python-1.1.8-avoid-diskless-test.patch b/Golden_Repo/n/netCDF4-python/netcdf4-python-1.1.8-avoid-diskless-test.patch
new file mode 100644
index 0000000000000000000000000000000000000000..d146f649548b0815386b6003647eb6cf37cee583
--- /dev/null
+++ b/Golden_Repo/n/netCDF4-python/netcdf4-python-1.1.8-avoid-diskless-test.patch
@@ -0,0 +1,14 @@
+# this test seems to always fall. The diskless thing is not really diskless it seems
+# By Ward Poelmans <ward.poelmans@ugent.be>
+diff -ur netcdf4-python-1.1.8rel/test/tst_diskless.py netcdf4-python-1.1.8rel.new/test/tst_diskless.py
+--- netcdf4-python-1.1.8rel/test/tst_diskless.py 2015-05-13 16:27:00.000000000 +0200
++++ netcdf4-python-1.1.8rel.new/test/tst_diskless.py 2016-01-07 14:16:21.851971913 +0100
+@@ -65,7 +65,7 @@
+ assert_array_almost_equal(foo[:], ranarr)
+ assert_array_almost_equal(bar[:], ranarr2)
+ # file does not actually exist on disk
+- assert(os.path.isfile(self.file)==False)
++# assert(os.path.isfile(self.file)==False)
+ # open persisted file.
+ # first, check that file does actually exist on disk
+ assert(os.path.isfile(self.file2)==True)
diff --git a/Golden_Repo/n/netCDF4-python/netcdf4-python-1.6.1-GCCcore-11.3.0-serial.eb b/Golden_Repo/n/netCDF4-python/netcdf4-python-1.6.1-GCCcore-11.3.0-serial.eb
new file mode 100644
index 0000000000000000000000000000000000000000..f5bceef51f279ec036d02f11c5d5849bf88c8643
--- /dev/null
+++ b/Golden_Repo/n/netCDF4-python/netcdf4-python-1.6.1-GCCcore-11.3.0-serial.eb
@@ -0,0 +1,59 @@
+easyblock = 'PythonBundle'
+
+name = 'netcdf4-python'
+version = '1.6.1'
+
+versionsuffix = '-serial'
+
+homepage = 'https://unidata.github.io/netcdf4-python/'
+description = """Python/numpy interface to netCDF."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {}
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('SciPy-bundle', '2022.05', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('netCDF', '4.9.0', '-serial'),
+ ('cURL', '7.83.0'),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+exts_default_options = {'source_urls': [PYPI_SOURCE]}
+
+exts_list = [
+ ('cftime', '1.6.2', {
+ 'checksums': ['8614c00fb8a5046de304fdd86dbd224f99408185d7b245ac6628d0276596e6d2'],
+ }),
+ (name, version, {
+ 'patches': ['netcdf4-python-1.1.8-avoid-diskless-test.patch'],
+ 'source_tmpl': 'netCDF4-%(version)s.tar.gz',
+ 'source_urls': ['https://pypi.python.org/packages/source/n/netCDF4'],
+ 'checksums': [
+ {'netCDF4-1.6.1.tar.gz': 'ba8dc5d65293a99f1afb8c2acf588d903fdfdc1963a62545b677fa2734262a78'},
+ {'netcdf4-python-1.1.8-avoid-diskless-test.patch':
+ 'a8b262fa201d55f59015e1bc14466c1d113f807543bc1e05a22481ab0d216d72'},
+ ],
+ }),
+]
+
+fix_python_shebang_for = ['bin/*']
+
+sanity_check_paths = {
+ 'files': ['bin/nc3tonc4', 'bin/nc4tonc3', 'bin/ncinfo'],
+ 'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_check_commands = [
+ "nc4tonc3 --help",
+ "nc3tonc4 --help",
+ "ncinfo --help",
+]
+
+moduleclass = 'data'
diff --git a/Golden_Repo/n/npsmpic/npsmpic-2022a.eb b/Golden_Repo/n/npsmpic/npsmpic-2022a.eb
index 2c0a5a4935b5bd34ab22e0d7559e32255f1ae292..b7c3900a29530edc7f1d33078fb1e79babdd5edd 100644
--- a/Golden_Repo/n/npsmpic/npsmpic-2022a.eb
+++ b/Golden_Repo/n/npsmpic/npsmpic-2022a.eb
@@ -13,7 +13,7 @@ local_compiler = ('NVHPC', '22.11')
dependencies = [
local_compiler,
('CUDA', '11.7', '', SYSTEM),
- ('psmpi', '5.6.0-1', '', local_compiler),
+ ('psmpi', '5.7.0-1', '', local_compiler),
]
moduleclass = 'toolchain'
diff --git a/Golden_Repo/n/numba/llvmlite-0.39_getparamattribute.patch b/Golden_Repo/n/numba/llvmlite-0.39_getparamattribute.patch
new file mode 100644
index 0000000000000000000000000000000000000000..88dd553398edef60aad4be4e87b682075aa15464
--- /dev/null
+++ b/Golden_Repo/n/numba/llvmlite-0.39_getparamattribute.patch
@@ -0,0 +1,11 @@
+--- ffi/value.cpp.orig 2022-12-07 16:25:09.106947789 +0000
++++ ffi/value.cpp 2022-12-07 16:25:58.887604268 +0000
+@@ -154,7 +154,7 @@
+ Argument *arg = unwrap<Argument>(A);
+ unsigned argno = arg->getArgNo();
+ AttributeSet attrs =
+- arg->getParent()->getAttributes().getParamAttributes(argno);
++ arg->getParent()->getAttributes().getParamAttrs(argno);
+ return wrap(new AttributeSetIterator(attrs.begin(), attrs.end()));
+ }
+
diff --git a/Golden_Repo/n/numba/llvmlite-0.39_pass.patch b/Golden_Repo/n/numba/llvmlite-0.39_pass.patch
new file mode 100644
index 0000000000000000000000000000000000000000..c786af0463864db906382971d2412d26e6298eb4
--- /dev/null
+++ b/Golden_Repo/n/numba/llvmlite-0.39_pass.patch
@@ -0,0 +1,10 @@
+--- ffi/passmanagers.cpp.orig 2022-12-07 16:11:49.483816317 +0000
++++ ffi/passmanagers.cpp 2022-12-07 16:12:19.848240354 +0000
+@@ -8,6 +8,7 @@
+ #include "llvm/IR/DiagnosticInfo.h"
+ #include "llvm/IR/DiagnosticPrinter.h"
+ #include "llvm/IR/LegacyPassManager.h"
++#include "llvm/Pass.h"
+ #include "llvm/IR/Module.h"
+ #include "llvm/Support/FileSystem.h"
+ #include "llvm/Support/ToolOutputFile.h"
diff --git a/Golden_Repo/n/numba/llvmlite-0.39_passmanager.patch b/Golden_Repo/n/numba/llvmlite-0.39_passmanager.patch
new file mode 100644
index 0000000000000000000000000000000000000000..8a0df097b10171ca9f4b75aba19bc01f5c87fd4b
--- /dev/null
+++ b/Golden_Repo/n/numba/llvmlite-0.39_passmanager.patch
@@ -0,0 +1,12 @@
+--- ffi/passmanagers.cpp.orig 2022-12-06 15:41:01.230034402 +0000
++++ ffi/passmanagers.cpp 2022-12-06 15:41:19.678191543 +0000
+@@ -17,9 +17,6 @@
+ #include "llvm-c/Transforms/IPO.h"
+ #include "llvm-c/Transforms/Scalar.h"
+ #include "llvm/IR/LegacyPassManager.h"
+-#if LLVM_VERSION_MAJOR > 11
+-#include "llvm/IR/RemarkStreamer.h"
+-#endif
+ #include "llvm/IR/LLVMRemarkStreamer.h"
+ #include "llvm/Remarks/RemarkStreamer.h"
+ #include "llvm/Transforms/IPO.h"
diff --git a/Golden_Repo/n/numba/llvmlite-0.39_target.patch b/Golden_Repo/n/numba/llvmlite-0.39_target.patch
new file mode 100644
index 0000000000000000000000000000000000000000..fcf5993a36430003550a1cdabc1112231e5faa4c
--- /dev/null
+++ b/Golden_Repo/n/numba/llvmlite-0.39_target.patch
@@ -0,0 +1,10 @@
+--- ffi/targets.cpp.orig 2022-12-06 15:44:43.191925420 +0000
++++ ffi/targets.cpp 2022-12-06 15:44:53.916016793 +0000
+@@ -204,7 +204,6 @@
+ rm = Reloc::DynamicNoPIC;
+
+ TargetOptions opt;
+- opt.PrintMachineCode = PrintMC;
+ opt.MCOptions.ABIName = ABIName;
+
+ bool jit = JIT;
diff --git a/Golden_Repo/n/numba/llvmlite-0.39_targetregistry.patch b/Golden_Repo/n/numba/llvmlite-0.39_targetregistry.patch
new file mode 100644
index 0000000000000000000000000000000000000000..fdcfc3f07b80e437b4a7dd23daa95e041e60aaf0
--- /dev/null
+++ b/Golden_Repo/n/numba/llvmlite-0.39_targetregistry.patch
@@ -0,0 +1,11 @@
+--- ffi/targets.cpp.orig 2022-12-07 15:22:37.446261237 +0000
++++ ffi/targets.cpp 2022-12-07 15:22:47.382407891 +0000
+@@ -6,7 +6,7 @@
+ #include "llvm/IR/LegacyPassManager.h"
+ #include "llvm/IR/Type.h"
+ #include "llvm/Support/Host.h"
+-#include "llvm/Support/TargetRegistry.h"
++#include "llvm/MC/TargetRegistry.h"
+ #include "llvm/Target/TargetMachine.h"
+
+ #include <cstdio>
diff --git a/Golden_Repo/n/numba/llvmlite-0.39_test-binding.patch b/Golden_Repo/n/numba/llvmlite-0.39_test-binding.patch
new file mode 100644
index 0000000000000000000000000000000000000000..732269110c18d4b134ec08ff4044395661cfec6d
--- /dev/null
+++ b/Golden_Repo/n/numba/llvmlite-0.39_test-binding.patch
@@ -0,0 +1,40 @@
+--- llvmlite/tests/test_binding.py.orig 2022-12-06 18:00:21.729557505 +0000
++++ llvmlite/tests/test_binding.py 2022-12-06 18:00:49.641795081 +0000
+@@ -18,6 +18,16 @@
+ from llvmlite.tests import TestCase
+
+
++def clean_string_whitespace(x: str) -> str:
++ # Remove trailing whitespace from the end of each line
++ x = re.sub(r"\s+$", "", x, flags=re.MULTILINE)
++ # Remove intermediate blank lines
++ x = re.sub(r"\n\s*\n", r"\n", x, flags=re.MULTILINE)
++ # Remove extraneous whitespace from the beginning and end of the string
++ x = x.strip()
++ return x
++
++
+ # arvm7l needs extra ABI symbols to link successfully
+ if platform.machine() == 'armv7l':
+ llvm.load_library_permanently('libgcc_s.so.1')
+@@ -555,7 +565,10 @@
+ bd = ir.IRBuilder(fn.append_basic_block(name="<>!*''#"))
+ bd.ret(ir.Constant(ir.IntType(32), 12345))
+ asm = str(mod)
+- self.assertEqual(asm, asm_nonalphanum_blocklabel)
++ self.assertEqual(
++ clean_string_whitespace(asm),
++ clean_string_whitespace(asm_nonalphanum_blocklabel)
++ )
+
+ def test_global_context(self):
+ gcontext1 = llvm.context.get_global_context()
+@@ -640,7 +653,7 @@
+ def test_version(self):
+ major, minor, patch = llvm.llvm_version_info
+ # one of these can be valid
+- valid = [(11,)]
++ valid = [(11,), (12,), (13,), (14,)]
+ self.assertIn((major,), valid)
+ self.assertIn(patch, range(10))
+
diff --git a/Golden_Repo/n/numba/numba-0.54.1_fix-numpy-1.21.patch b/Golden_Repo/n/numba/numba-0.54.1_fix-numpy-1.21.patch
new file mode 100644
index 0000000000000000000000000000000000000000..f15a14ee48e2ac0c404151c5fbfa81eb454d7294
--- /dev/null
+++ b/Golden_Repo/n/numba/numba-0.54.1_fix-numpy-1.21.patch
@@ -0,0 +1,251 @@
+fix compatibility with numpy 1.21
+extracted from https://github.com/numba/numba/pull/7483
+
+--- numba-0.54.1/setup.py.orig 2021-12-15 15:49:05.785690139 +0100
++++ numba-0.54.1/setup.py 2021-12-15 15:49:09.255689514 +0100
+@@ -23,7 +23,7 @@
+ max_python_version = "3.10" # exclusive
+ min_numpy_build_version = "1.11"
+ min_numpy_run_version = "1.17"
+-max_numpy_run_version = "1.21"
++max_numpy_run_version = "1.22"
+ min_llvmlite_version = "0.37.0rc1"
+ max_llvmlite_version = "0.38"
+
+--- numba-0.54.1/numba/__init__.py.orig 2021-10-08 19:12:54.197672600 +0200
++++ numba-0.54.1/numba/__init__.py 2021-12-15 15:57:05.995560177 +0100
+@@ -134,8 +134,8 @@
+
+ if numpy_version < (1, 17):
+ raise ImportError("Numba needs NumPy 1.17 or greater")
+- elif numpy_version > (1, 20):
+- raise ImportError("Numba needs NumPy 1.20 or less")
++ elif numpy_version > (1, 21):
++ raise ImportError("Numba needs NumPy 1.21 or less")
+
+ try:
+ import scipy
+
+
+From cff3dd6f92286fd8621a902d6595b65208e90013 Mon Sep 17 00:00:00 2001
+From: Sebastian Berg <sebastian@sipsolutions.net>
+Date: Thu, 30 Sep 2021 14:27:01 -0500
+Subject: [PATCH 6/8] BUG: Support the fastcall mechanism for NumPy's ufunc
+ methods
+
+This is a start to support NumPy 1.21 use of FASTCALL methods
+in ufuncs. There are probably better ways to achieve this support.
+
+NumPy further uses `tp_vectorcall_offset` on newer versions. This
+PR does not add support for this (meaning that a DUfunc will be
+unnecessarily slow on NumPy >=1.21 when kwargs are used).
+---
+ numba/np/ufunc/_internal.c | 99 +++++++++++++++++++++++++++++++++++++-
+ 1 file changed, 97 insertions(+), 2 deletions(-)
+
+diff --git a/numba/np/ufunc/_internal.c b/numba/np/ufunc/_internal.c
+index d3ca1319b6..600014df55 100644
+--- a/numba/np/ufunc/_internal.c
++++ b/numba/np/ufunc/_internal.c
+@@ -276,6 +276,7 @@ static PyMemberDef dufunc_members[] = {
+ */
+
+ static struct _ufunc_dispatch {
++ /* Note that the following may also hold `_PyCFunctionFastWithKeywords` */
+ PyCFunctionWithKeywords ufunc_reduce;
+ PyCFunctionWithKeywords ufunc_accumulate;
+ PyCFunctionWithKeywords ufunc_reduceat;
+@@ -286,7 +287,7 @@ static struct _ufunc_dispatch {
+ } ufunc_dispatch;
+
+ static int
+-init_ufunc_dispatch(void)
++init_ufunc_dispatch(int *numpy_uses_fastcall)
+ {
+ int result = 0;
+ PyMethodDef * crnt = PyUFunc_Type.tp_methods;
+@@ -329,6 +330,16 @@ init_ufunc_dispatch(void)
+ result = -1; /* Unknown method */
+ }
+ if (result < 0) break;
++
++ /* Check whether NumPy uses fastcall (ufunc.at never uses it) */
++ if (!strncmp(crnt_name, "at", 3)) {
++ if (*numpy_uses_fastcall == -1) {
++ *numpy_uses_fastcall = crnt->ml_flags & METH_FASTCALL;
++ }
++ else if (*numpy_uses_fastcall != (crnt->ml_flags & METH_FASTCALL)) {
++ return -1;
++ }
++ }
+ }
+ if (result == 0) {
+ /* Sanity check. */
+@@ -344,6 +355,7 @@ init_ufunc_dispatch(void)
+ return result;
+ }
+
++
+ static PyObject *
+ dufunc_reduce(PyDUFuncObject * self, PyObject * args, PyObject *kws)
+ {
+@@ -368,6 +380,47 @@ dufunc_outer(PyDUFuncObject * self, PyObject * args, PyObject *kws)
+ return ufunc_dispatch.ufunc_outer((PyObject*)self->ufunc, args, kws);
+ }
+
++
++/*
++ * The following are the vectorcall versions of the above, since NumPy
++ * uses the FASTCALL/Vectorcall protocol starting with version 1.21.
++ * The only NumPy versions supporting vectorcall use Python 3.7 or higher.
++ */
++static PyObject *
++dufunc_reduce_fast(PyDUFuncObject * self,
++ PyObject *const *args, Py_ssize_t len_args, PyObject *kwnames)
++{
++ return ((_PyCFunctionFastWithKeywords)ufunc_dispatch.ufunc_reduce)(
++ (PyObject*)self->ufunc, args, len_args, kwnames);
++}
++
++static PyObject *
++dufunc_reduceat_fast(PyDUFuncObject * self,
++ PyObject *const *args, Py_ssize_t len_args, PyObject *kwnames)
++{
++ return ((_PyCFunctionFastWithKeywords)ufunc_dispatch.ufunc_reduceat)(
++ (PyObject*)self->ufunc, args, len_args, kwnames);
++}
++
++
++static PyObject *
++dufunc_accumulate_fast(PyDUFuncObject * self,
++ PyObject *const *args, Py_ssize_t len_args, PyObject *kwnames)
++{
++ return ((_PyCFunctionFastWithKeywords)ufunc_dispatch.ufunc_accumulate)(
++ (PyObject*)self->ufunc, args, len_args, kwnames);
++}
++
++
++static PyObject *
++dufunc_outer_fast(PyDUFuncObject * self,
++ PyObject *const *args, Py_ssize_t len_args, PyObject *kwnames)
++{
++ return ((_PyCFunctionFastWithKeywords)ufunc_dispatch.ufunc_outer)(
++ (PyObject*)self->ufunc, args, len_args, kwnames);
++}
++
++
+ #if NPY_API_VERSION >= 0x00000008
+ static PyObject *
+ dufunc_at(PyDUFuncObject * self, PyObject * args)
+@@ -568,6 +621,41 @@ static struct PyMethodDef dufunc_methods[] = {
+ {NULL, NULL, 0, NULL} /* sentinel */
+ };
+
++
++/*
++ * If Python is new enough, NumPy may use fastcall. In that case we have to
++ * also use fastcall for simplicity and speed.
++ */
++static struct PyMethodDef dufunc_methods_fast[] = {
++ {"reduce",
++ (PyCFunction)dufunc_reduce_fast,
++ METH_FASTCALL | METH_KEYWORDS, NULL },
++ {"accumulate",
++ (PyCFunction)dufunc_accumulate_fast,
++ METH_FASTCALL | METH_KEYWORDS, NULL },
++ {"reduceat",
++ (PyCFunction)dufunc_reduceat_fast,
++ METH_FASTCALL | METH_KEYWORDS, NULL },
++ {"outer",
++ (PyCFunction)dufunc_outer_fast,
++ METH_FASTCALL | METH_KEYWORDS, NULL},
++#if NPY_API_VERSION >= 0x00000008
++ {"at",
++ (PyCFunction)dufunc_at,
++ METH_VARARGS, NULL},
++#endif
++ {"_compile_for_args",
++ (PyCFunction)dufunc__compile_for_args,
++ METH_VARARGS | METH_KEYWORDS,
++ "Abstract method: subclasses should overload _compile_for_args() to compile the ufunc at the given arguments' types."},
++ {"_add_loop",
++ (PyCFunction)dufunc__add_loop,
++ METH_VARARGS,
++ NULL},
++ {NULL, NULL, 0, NULL} /* sentinel */
++};
++
++
+ static PyObject *
+ dufunc_getfrozen(PyDUFuncObject * self, void * closure)
+ {
+@@ -681,8 +769,15 @@ MOD_INIT(_internal)
+ return MOD_ERROR_VAL;
+
+ PyDUFunc_Type.tp_new = PyType_GenericNew;
+- if (init_ufunc_dispatch() <= 0)
++
++ int numpy_uses_fastcall = -1;
++ if (init_ufunc_dispatch(&numpy_uses_fastcall) <= 0)
+ return MOD_ERROR_VAL;
++
++ if (numpy_uses_fastcall) {
++ PyDUFunc_Type.tp_methods = dufunc_methods_fast;
++ }
++
+ if (PyType_Ready(&PyDUFunc_Type) < 0)
+ return MOD_ERROR_VAL;
+ Py_INCREF(&PyDUFunc_Type);
+
+From 4df2640b60804f1462e2f48b72f744005ed6ec9a Mon Sep 17 00:00:00 2001
+From: Stuart Archibald <stuartarchibald@users.noreply.github.com>
+Date: Fri, 15 Oct 2021 15:23:53 +0100
+Subject: [PATCH 7/8] Add suggested fix for detecting ufunc.at
+
+As title.
+---
+ numba/np/ufunc/_internal.c | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/numba/np/ufunc/_internal.c b/numba/np/ufunc/_internal.c
+index 600014df55..d3e19b1cdc 100644
+--- a/numba/np/ufunc/_internal.c
++++ b/numba/np/ufunc/_internal.c
+@@ -332,7 +332,7 @@ init_ufunc_dispatch(int *numpy_uses_fastcall)
+ if (result < 0) break;
+
+ /* Check whether NumPy uses fastcall (ufunc.at never uses it) */
+- if (!strncmp(crnt_name, "at", 3)) {
++ if (strncmp(crnt_name, "at", 3) != 0) {
+ if (*numpy_uses_fastcall == -1) {
+ *numpy_uses_fastcall = crnt->ml_flags & METH_FASTCALL;
+ }
+
+From 635e05661b5d715bd8a9cb9448bd24930f693c38 Mon Sep 17 00:00:00 2001
+From: Stuart Archibald <stuartarchibald@users.noreply.github.com>
+Date: Tue, 16 Nov 2021 12:06:11 +0000
+Subject: [PATCH 8/8] Skip NaT input on np.median test for np=1.21.
+
+As title. See: https://github.com/numpy/numpy/issues/20376
+---
+ numba/tests/test_array_reductions.py | 7 +++++--
+ 1 file changed, 5 insertions(+), 2 deletions(-)
+
+diff --git a/numba/tests/test_array_reductions.py b/numba/tests/test_array_reductions.py
+index de0d445fe6..a5763a753b 100644
+--- a/numba/tests/test_array_reductions.py
++++ b/numba/tests/test_array_reductions.py
+@@ -686,8 +686,11 @@ def _do_check_nptimedelta(self, pyfunc, arr):
+ np.random.shuffle(arr)
+ self.assertPreciseEqual(cfunc(arr), pyfunc(arr))
+ # Test with a NaT
+- arr[arr.size // 2] = 'NaT'
+- self.assertPreciseEqual(cfunc(arr), pyfunc(arr))
++ if numpy_version != (1, 21) and 'median' not in pyfunc.__name__:
++ # There's problems with NaT handling in "median" on at least NumPy
++ # 1.21.{3, 4}. See https://github.com/numpy/numpy/issues/20376
++ arr[arr.size // 2] = 'NaT'
++ self.assertPreciseEqual(cfunc(arr), pyfunc(arr))
+ if 'median' not in pyfunc.__name__:
+ # Test with (val, NaT)^N (and with the random NaT from above)
+ # use a loop, there's some weird thing/bug with arr[1::2] = 'NaT'
diff --git a/Golden_Repo/n/numba/numba-0.56.4-foss-2022a-CUDA-11.7.eb b/Golden_Repo/n/numba/numba-0.56.4-foss-2022a-CUDA-11.7.eb
new file mode 100644
index 0000000000000000000000000000000000000000..bbc4870252cf65c645af68712e69bc96858bd3ba
--- /dev/null
+++ b/Golden_Repo/n/numba/numba-0.56.4-foss-2022a-CUDA-11.7.eb
@@ -0,0 +1,69 @@
+easyblock = 'PythonBundle'
+
+name = 'numba'
+version = '0.56.4'
+versionsuffix = '-CUDA-%(cudaver)s'
+
+homepage = 'https://numba.pydata.org/'
+description = """Numba is an Open Source NumPy-aware optimizing compiler for
+Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM
+compiler infrastructure to compile Python syntax to machine code."""
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+toolchainopts = {'pic': True}
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('SciPy-bundle', '2022.05', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('LLVM', '14.0.3'),
+ ('CUDA', '11.7', '', SYSTEM),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && "
+local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && "
+
+
+exts_list = [
+ ('llvmlite', '0.39.1', {
+ 'patches': [
+ 'llvmlite-0.39_passmanager.patch',
+ 'llvmlite-0.39_target.patch',
+ 'llvmlite-0.39_test-binding.patch',
+ 'llvmlite-0.39_targetregistry.patch',
+ 'llvmlite-0.39_pass.patch',
+ 'llvmlite-0.39_getparamattribute.patch',
+ ],
+ 'preinstallopts': "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && " +
+ "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ",
+ 'checksums': [
+ {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'},
+ {'llvmlite-0.39_passmanager.patch': 'acfe0b35142c73f5936399446b1dbb997389c55ca95e8924d3a2d160ffca0056'},
+ {'llvmlite-0.39_target.patch': '586f19f01e5923cd852430a900913cd4e1382f7f825c7259c42556eba7c0e5ba'},
+ {'llvmlite-0.39_test-binding.patch': '4ecb6bc4503d9f182805dccbde34e735c9d71c7e1a998f8e15e49773c7eb5d93'},
+ {'llvmlite-0.39_targetregistry.patch': '62c347a2d709c144fbe934a57d1f6703ddfccaf5b7049de2abbf93c4a9733730'},
+ {'llvmlite-0.39_pass.patch': 'fb861a0dcfd1caa4aa54786840547352d63378a39b6321aea66e893ae2718381'},
+ {'llvmlite-0.39_getparamattribute.patch':
+ 'edba3e1d33efdce79be486fd3c2604ef82d95a5b8f60fb6c5591963bb42748e7'},
+ ],
+ }),
+ (name, version, {
+ 'checksums': ['32d9fef412c81483d7efe0ceb6cf4d3310fde8b624a9cecca00f790573ac96ee'],
+ }),
+]
+
+fix_python_shebang_for = ['bin/*']
+
+sanity_check_paths = {
+ 'files': ['bin/numba', 'bin/pycc'],
+ 'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_check_commands = [
+ "python -m llvmlite.tests",
+ "numba --help",
+]
+
+moduleclass = 'lang'
diff --git a/Golden_Repo/n/numba/numba-0.56.4-gcccoremkl-11.3.0-2022.1.0-CUDA-11.7.eb b/Golden_Repo/n/numba/numba-0.56.4-gcccoremkl-11.3.0-2022.1.0-CUDA-11.7.eb
new file mode 100644
index 0000000000000000000000000000000000000000..fbea0b64ab63f506ab6833c5f56ac75c5c62723b
--- /dev/null
+++ b/Golden_Repo/n/numba/numba-0.56.4-gcccoremkl-11.3.0-2022.1.0-CUDA-11.7.eb
@@ -0,0 +1,69 @@
+easyblock = 'PythonBundle'
+
+name = 'numba'
+version = '0.56.4'
+versionsuffix = '-CUDA-%(cudaver)s'
+
+homepage = 'https://numba.pydata.org/'
+description = """Numba is an Open Source NumPy-aware optimizing compiler for
+Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM
+compiler infrastructure to compile Python syntax to machine code."""
+
+toolchain = {'name': 'gcccoremkl', 'version': '11.3.0-2022.1.0'}
+toolchainopts = {'pic': True}
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('SciPy-bundle', '2022.05', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('LLVM', '14.0.3'),
+ ('CUDA', '11.7', '', SYSTEM),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+local_llvmlite_preinstallopts = "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config && "
+local_llvmlite_preinstallopts += "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && "
+
+
+exts_list = [
+ ('llvmlite', '0.39.1', {
+ 'patches': [
+ 'llvmlite-0.39_passmanager.patch',
+ 'llvmlite-0.39_target.patch',
+ 'llvmlite-0.39_test-binding.patch',
+ 'llvmlite-0.39_targetregistry.patch',
+ 'llvmlite-0.39_pass.patch',
+ 'llvmlite-0.39_getparamattribute.patch',
+ ],
+ 'preinstallopts': "export LLVM_CONFIG=${EBROOTLLVM}/bin/llvm-config &&" +
+ "export LLVMLITE_SKIP_LLVM_VERSION_CHECK=1 && ",
+ 'checksums': [
+ {'llvmlite-0.39.1.tar.gz': 'b43abd7c82e805261c425d50335be9a6c4f84264e34d6d6e475207300005d572'},
+ {'llvmlite-0.39_passmanager.patch': 'acfe0b35142c73f5936399446b1dbb997389c55ca95e8924d3a2d160ffca0056'},
+ {'llvmlite-0.39_target.patch': '586f19f01e5923cd852430a900913cd4e1382f7f825c7259c42556eba7c0e5ba'},
+ {'llvmlite-0.39_test-binding.patch': '4ecb6bc4503d9f182805dccbde34e735c9d71c7e1a998f8e15e49773c7eb5d93'},
+ {'llvmlite-0.39_targetregistry.patch': '62c347a2d709c144fbe934a57d1f6703ddfccaf5b7049de2abbf93c4a9733730'},
+ {'llvmlite-0.39_pass.patch': 'fb861a0dcfd1caa4aa54786840547352d63378a39b6321aea66e893ae2718381'},
+ {'llvmlite-0.39_getparamattribute.patch':
+ 'edba3e1d33efdce79be486fd3c2604ef82d95a5b8f60fb6c5591963bb42748e7'},
+ ],
+ }),
+ (name, version, {
+ 'checksums': ['32d9fef412c81483d7efe0ceb6cf4d3310fde8b624a9cecca00f790573ac96ee'],
+ }),
+]
+
+fix_python_shebang_for = ['bin/*']
+
+sanity_check_paths = {
+ 'files': ['bin/numba', 'bin/pycc'],
+ 'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_check_commands = [
+ "python -m llvmlite.tests",
+ "numba --help",
+]
+
+moduleclass = 'lang'
diff --git a/Golden_Repo/o/OPARI2/OPARI2-2.0.7-GCCcore-11.3.0.eb b/Golden_Repo/o/OPARI2/OPARI2-2.0.7-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..e0337785c7b99d185a93e19b3c1589f1acb0ca52
--- /dev/null
+++ b/Golden_Repo/o/OPARI2/OPARI2-2.0.7-GCCcore-11.3.0.eb
@@ -0,0 +1,44 @@
+##
+# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild
+# Copyright:: Copyright 2013-2021 Juelich Supercomputing Centre, Germany
+# Authors:: Bernd Mohr <b.mohr@fz-juelich.de>
+# Markus Geimer <m.geimer@fz-juelich.de>
+# Christian Feld <c.feld@fz-juelich.de>
+# License:: 3-clause BSD
+#
+# This work is based on experiences from the UNITE project
+# http://apps.fz-juelich.de/unite/
+##
+
+easyblock = 'ConfigureMake'
+
+name = 'OPARI2'
+version = '2.0.7'
+
+homepage = 'https://www.score-p.org'
+description = """
+OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a
+source-to-source instrumentation tool for OpenMP and hybrid codes.
+It surrounds OpenMP directives and runtime library calls with calls
+to the POMP2 measurement interface.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['http://perftools.pages.jsc.fz-juelich.de/cicd/opari2/tags/opari2-%(version)s']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = [
+ 'e302a4cc265eb2a4aa27c16a90eabd9e1e58cb02a191dd1c4d86f9a0df128715', # opari2-2.0.7.tar.gz
+]
+
+builddependencies = [
+ # use same binutils version that was used when building GCCcore
+ ('binutils', '2.38'),
+]
+
+sanity_check_paths = {
+ 'files': ['bin/opari2', 'include/opari2/pomp2_lib.h'],
+ 'dirs': [],
+}
+
+moduleclass = 'perf'
diff --git a/Golden_Repo/o/OTF2/OTF2-3.0.2-GCCcore-11.3.0.eb b/Golden_Repo/o/OTF2/OTF2-3.0.2-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..205208f567430749f4b50fce4b89ee13d5a59f07
--- /dev/null
+++ b/Golden_Repo/o/OTF2/OTF2-3.0.2-GCCcore-11.3.0.eb
@@ -0,0 +1,49 @@
+##
+# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild
+# Copyright:: Copyright 2013-2022 Juelich Supercomputing Centre, Germany
+# Authors:: Bernd Mohr <b.mohr@fz-juelich.de>
+# Markus Geimer <m.geimer@fz-juelich.de>
+# Christian Feld <c.feld@fz-juelich.de>
+# License:: 3-clause BSD
+#
+# This work is based on experiences from the UNITE project
+# http://apps.fz-juelich.de/unite/
+##
+
+easyblock = 'EB_Score_minus_P'
+
+name = 'OTF2'
+version = '3.0.2'
+
+homepage = 'https://www.score-p.org'
+description = """
+The Open Trace Format 2 is a highly scalable, memory efficient event trace
+data format plus support library. It is the new standard trace format for
+Scalasca, Vampir, and TAU and is open for other tools.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['http://perftools.pages.jsc.fz-juelich.de/cicd/otf2/tags/otf2-%(version)s']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = [
+ 'ae3a7ad83055d8f873738fee5031470652d31b9bcbf223dd556aea41f5f62303', # otf2-3.0.2.tar.gz
+]
+
+builddependencies = [
+ # use same binutils version that was used when building GCCcore
+ ('binutils', '2.38'),
+ # SIONlib container support (optional):
+ ('SIONlib', '1.7.7', '-tools'),
+]
+
+configopts = '--enable-shared'
+
+sanity_check_paths = {
+ 'files': ['bin/otf2-config', 'include/otf2/otf2.h',
+ ('lib/libotf2.a', 'lib64/libotf2.a'),
+ ('lib/libotf2.%s' % SHLIB_EXT, 'lib64/libotf2.%s' % SHLIB_EXT)],
+ 'dirs': [],
+}
+
+moduleclass = 'perf'
diff --git a/Golden_Repo/o/OpenBLAS/OpenBLAS-0.3.20-GCCcore-11.3.0.eb b/Golden_Repo/o/OpenBLAS/OpenBLAS-0.3.20-GCC-11.3.0.eb
similarity index 95%
rename from Golden_Repo/o/OpenBLAS/OpenBLAS-0.3.20-GCCcore-11.3.0.eb
rename to Golden_Repo/o/OpenBLAS/OpenBLAS-0.3.20-GCC-11.3.0.eb
index e071d6825e86cc41c4040785a3b8c29ec03f371f..72e27286e561fb237c0e45f7823ed480329b4199 100644
--- a/Golden_Repo/o/OpenBLAS/OpenBLAS-0.3.20-GCCcore-11.3.0.eb
+++ b/Golden_Repo/o/OpenBLAS/OpenBLAS-0.3.20-GCC-11.3.0.eb
@@ -4,7 +4,7 @@ version = '0.3.20'
homepage = 'http://www.openblas.net/'
description = "OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version."
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchain = {'name': 'GCC', 'version': '11.3.0'}
source_urls = [
# order matters, trying to download the large.tgz/timing.tgz LAPACK tarballs from GitHub causes trouble
diff --git a/Golden_Repo/o/OpenMPI/OpenMPI-4.1.4-GCC-11.3.0.eb b/Golden_Repo/o/OpenMPI/OpenMPI-4.1.4-GCC-11.3.0.eb
index 6b211284208cf683ae8875ba79c9ea6d4a64d181..690b2151204daca07ac4aa29e7bec0e2a493ac0e 100644
--- a/Golden_Repo/o/OpenMPI/OpenMPI-4.1.4-GCC-11.3.0.eb
+++ b/Golden_Repo/o/OpenMPI/OpenMPI-4.1.4-GCC-11.3.0.eb
@@ -21,8 +21,6 @@ checksums = [
osdependencies = [
# needed for --with-verbs
('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel'),
- # needed for --with-pmix
- ('pmix-devel'),
]
builddependencies = [
diff --git a/Golden_Repo/o/OpenMPI/OpenMPI-4.1.4-NVHPC-22.11.eb b/Golden_Repo/o/OpenMPI/OpenMPI-4.1.4-NVHPC-22.11.eb
index 54bae3f67683e1c539359aa1ec6b20098b03eb89..40ed67dfed508275d69f8b49c83b2c6e551c8709 100644
--- a/Golden_Repo/o/OpenMPI/OpenMPI-4.1.4-NVHPC-22.11.eb
+++ b/Golden_Repo/o/OpenMPI/OpenMPI-4.1.4-NVHPC-22.11.eb
@@ -21,8 +21,6 @@ checksums = [
osdependencies = [
# needed for --with-verbs
('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel'),
- # needed for --with-pmix
- ('pmix-devel'),
]
builddependencies = [
diff --git a/Golden_Repo/o/OpenSlide/OpenSlide-3.4.1-GCCcore-11.3.0-largefiles.eb b/Golden_Repo/o/OpenSlide/OpenSlide-3.4.1-GCCcore-11.3.0-largefiles.eb
new file mode 100644
index 0000000000000000000000000000000000000000..b39f32e43c6673289720c24daa352d11d63ddc35
--- /dev/null
+++ b/Golden_Repo/o/OpenSlide/OpenSlide-3.4.1-GCCcore-11.3.0-largefiles.eb
@@ -0,0 +1,56 @@
+easyblock = 'ConfigureMake'
+
+name = 'OpenSlide'
+version = '3.4.1'
+versionsuffix = '-largefiles'
+
+homepage = 'https://openslide.org/'
+description = """OpenSlide is a C library that provides a simple interface to
+read whole-slide images (also known as virtual slides)."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = [GITHUB_SOURCE]
+sources = ['v%(version)s.tar.gz']
+patches = ['%(name)s-%(version)s_large_file_support.patch']
+checksums = [
+ # v3.4.1.tar.gz
+ 'a5d869916e370125421535dcce778b2ba625dc50d920aa4ca93bbaaa6a7b470c',
+ # %(name)s-%(version_major_minor)s.1_large_file_support.patch
+ 'cb618053f4ae6c3ce37d1b8b0e4ef7c55fd17378776d13be4aa4efab91706b8c',
+]
+
+builddependencies = [
+ ('Autotools', '20220317'),
+ ('M4', '1.4.19'),
+ ('pkg-config', '0.29.2'),
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('zlib', '1.2.12'),
+ ('libpng', '1.6.37'),
+ ('libjpeg-turbo', '2.1.3'),
+ ('LibTIFF', '4.3.0'),
+ ('OpenJPEG', '2.5.0'),
+ ('libxml2', '2.9.13'),
+ ('SQLite', '3.38.3'),
+ ('cairo', '1.17.4'),
+ ('Gdk-Pixbuf', '2.42.8'),
+]
+
+preconfigopts = "autoreconf -f -i && "
+
+sanity_check_paths = {
+ 'files': [
+ 'bin/openslide-quickhash1sum',
+ 'bin/openslide-show-properties',
+ 'bin/openslide-write-png',
+ 'lib/libopenslide.la',
+ 'lib/libopenslide.%s' % SHLIB_EXT
+ ],
+ 'dirs': ['include/openslide']
+}
+
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/p/PAPI/PAPI-7.0.0-GCCcore-11.3.0.eb b/Golden_Repo/p/PAPI/PAPI-7.0.0-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..d867a14fbf3b9dfe52c012acbf949526dbc251e5
--- /dev/null
+++ b/Golden_Repo/p/PAPI/PAPI-7.0.0-GCCcore-11.3.0.eb
@@ -0,0 +1,49 @@
+##
+# Author: Robert Mijakovic <robert.mijakovic@lxp.lu>
+##
+
+easyblock = 'ConfigureMake'
+
+name = 'PAPI'
+version = '7.0.0'
+
+homepage = 'https://icl.cs.utk.edu/projects/papi/'
+
+description = """
+ PAPI provides the tool designer and application engineer with a consistent
+ interface and methodology for use of the performance counter hardware found
+ in most major microprocessors. PAPI enables software engineers to see, in near
+ real time, the relation between software performance and processor events.
+ In addition Component PAPI provides access to a collection of components
+ that expose performance measurement opportunites across the hardware and
+ software stack.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://icl.cs.utk.edu/projects/papi/downloads/']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['799dcc317a47da96beaeed445812ecb6ae49df7c0504a4569797c1f7d74c4fd2']
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+start_dir = 'src'
+
+configopts = "--with-components='rapl sde' " # for energy measurements
+
+parallel = 1
+
+runtest = 'fulltest'
+
+sanity_check_paths = {
+ 'files': ["bin/papi_%s" % x
+ for x in ["avail", "clockres", "command_line", "component_avail",
+ "cost", "decode", "error_codes", "event_chooser",
+ "mem_info", "multiplex_cost", "native_avail",
+ "version", "xml_event_info"]],
+ 'dirs': [],
+}
+
+moduleclass = 'perf'
diff --git a/Golden_Repo/p/Panoply/Panoply-5.2.2.eb b/Golden_Repo/p/Panoply/Panoply-5.2.2.eb
new file mode 100644
index 0000000000000000000000000000000000000000..f30a46d522f46cc066cbd643abd21da9a8999ef3
--- /dev/null
+++ b/Golden_Repo/p/Panoply/Panoply-5.2.2.eb
@@ -0,0 +1,32 @@
+easyblock = 'PackedBinary'
+
+name = 'Panoply'
+version = '5.2.2'
+
+homepage = 'https://www.giss.nasa.gov/tools/panoply'
+description = "Panoply plots geo-referenced and other arrays from netCDF, HDF, GRIB, and other datasets."
+
+
+toolchain = SYSTEM
+
+source_urls = ['https://www.giss.nasa.gov/tools/panoply/download/']
+sources = ['%(name)sJ-%(version)s.tgz']
+checksums = ['4488dd35f5f88ec330a606c4d5a4f34fa6f2b08146522df7a399b4df47c5ea68']
+
+dependencies = [
+ ('Java', '11', '', SYSTEM),
+]
+
+postinstallcmds = [
+ 'mkdir %(installdir)s/bin',
+ 'mv %(installdir)s/panoply.sh %(installdir)s/bin',
+ 'sed -i "s/jars/..\/jars/g" %(installdir)s/bin/panoply.sh',
+ 'ln -s %(installdir)s/bin/panoply.sh %(installdir)s/bin/panoply',
+]
+
+sanity_check_paths = {
+ 'files': ['bin/panoply'],
+ 'dirs': ['jars']
+}
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/p/ParMETIS/ParMETIS-4.0.3-gompi-2022a.eb b/Golden_Repo/p/ParMETIS/ParMETIS-4.0.3-gompi-2022a.eb
new file mode 100644
index 0000000000000000000000000000000000000000..28a972bcf25ac120c63601b0b7c331100869d687
--- /dev/null
+++ b/Golden_Repo/p/ParMETIS/ParMETIS-4.0.3-gompi-2022a.eb
@@ -0,0 +1,59 @@
+name = 'ParMETIS'
+
+version = '4.0.3'
+
+homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview'
+
+description = """ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning
+
+unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the
+
+functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large
+
+scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way
+
+graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.
+
+"""
+
+toolchain = {'name': 'gompi', 'version': '2022a'}
+
+toolchainopts = {'optarch': True, 'usempi': True, 'pic': True, 'openmp': True}
+
+source_urls = ['http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis']
+
+sources = [SOURCELOWER_TAR_GZ]
+
+patches = [
+
+ # Needed for elemental
+
+ 'parmetis_computevertexseparator.patch'
+
+]
+
+checksums = [
+
+ 'f2d9a231b7cf97f1fee6e8c9663113ebf6c240d407d3c118c55b3633d6be6e5f', # parmetis-4.0.3.tar.gz
+
+ 'b82f5e869b971b5e49566091a79783cc267276bcddcd939abf2240f415287fa7', # parmetis_computevertexseparator.patch
+
+]
+
+builddependencies = [
+
+ ('CMake', '3.23.1')
+
+]
+
+modextravars = {
+
+ 'PARMETIS_ROOT': '%(installdir)s',
+
+ 'PARMETIS_LIB': '%(installdir)s/lib',
+
+ 'PARMETIS_INCLUDE': '%(installdir)s/include'
+
+}
+
+moduleclass = 'math'
diff --git a/Golden_Repo/p/ParMETIS/parmetis-4.0.3-double.patch b/Golden_Repo/p/ParMETIS/parmetis-4.0.3-double.patch
new file mode 100644
index 0000000000000000000000000000000000000000..bf6f1c5a889fa3526873dd8a000bbffbda800cb8
--- /dev/null
+++ b/Golden_Repo/p/ParMETIS/parmetis-4.0.3-double.patch
@@ -0,0 +1,11 @@
+--- parmetis-4.0.3/metis/include/metis.h.orig 2013-03-30 17:24:50.000000000 +0100
++++ parmetis-4.0.3/metis/include/metis.h 2016-04-20 11:07:49.485844000 +0200
+@@ -40,7 +40,7 @@
+ 32 : single precission floating point (float)
+ 64 : double precission floating point (double)
+ --------------------------------------------------------------------------*/
+-#define REALTYPEWIDTH 32
++#define REALTYPEWIDTH 64
+
+
+
diff --git a/Golden_Repo/p/ParMETIS/parmetis_computevertexseparator.patch b/Golden_Repo/p/ParMETIS/parmetis_computevertexseparator.patch
new file mode 100644
index 0000000000000000000000000000000000000000..adbc37c8510b4deeb44df2e2d1fd3652a257621a
--- /dev/null
+++ b/Golden_Repo/p/ParMETIS/parmetis_computevertexseparator.patch
@@ -0,0 +1,186 @@
+diff -ruN parmetis-4.0.3.old/include/parmetis.h parmetis-4.0.3/include/parmetis.h
+--- parmetis-4.0.3.old/include/parmetis.h 2017-04-05 17:20:11.888709466 +0200
++++ parmetis-4.0.3/include/parmetis.h 2017-04-05 17:21:38.247478696 +0200
+@@ -113,6 +113,12 @@
+ idx_t *vtxdist, idx_t *xadj, idx_t *adjncy, idx_t *numflag,
+ idx_t *options, idx_t *order, idx_t *sizes, MPI_Comm *comm);
+
++void ParMETIS_ComputeVertexSeparator(
++ idx_t *vtxdist, idx_t *xadj, idx_t *adjncy,
++ idx_t *p_nseps, idx_t *s_nseps,
++ real_t *ubfrac, idx_t *idbglvl, idx_t *order, idx_t *sizes,
++ MPI_Comm *comm);
++
+ #ifdef __cplusplus
+ }
+ #endif
+diff -ruN parmetis-4.0.3.old/libparmetis/ComputeVertexSeparator.c parmetis-4.0.3/libparmetis/ComputeVertexSeparator.c
+--- parmetis-4.0.3.old/libparmetis/ComputeVertexSeparator.c 1970-01-01 01:00:00.000000000 +0100
++++ parmetis-4.0.3/libparmetis/ComputeVertexSeparator.c 2017-04-05 17:22:32.477589755 +0200
+@@ -0,0 +1,166 @@
++/*
++ * Copyright 1997, Regents of the University of Minnesota
++ * Created by modifying ParMETIS routines by Jack Poulson, 2012-2015
++ */
++#include <parmetislib.h>
++
++void ElParallelLabelVertices
++( ctrl_t *ctrl, graph_t *graph, idx_t *order, idx_t *sizes )
++{
++ idx_t i, j, nvtxs, id;
++ idx_t *where, *lpwgts, *gpwgts;
++ idx_t sizescan[3];
++
++ nvtxs = graph->nvtxs;
++ where = graph->where;
++ lpwgts = graph->lpwgts;
++ gpwgts = graph->gpwgts;
++
++ /* Compute the local sizes of the left side, right side, and separator */
++ iset(3, 0, lpwgts);
++ for (i=0; i<nvtxs; i++)
++ lpwgts[where[i]]++;
++
++ /* Perform a Prefix scan of the separator size to determine the boundaries */
++ gkMPI_Scan((void *)lpwgts, (void *)sizescan, 3, IDX_T, MPI_SUM, ctrl->comm);
++ gkMPI_Allreduce
++ ((void *)lpwgts, (void *)gpwgts, 3, IDX_T, MPI_SUM, ctrl->comm);
++
++ /* Fill in the size of the partition */
++ sizes[0] = gpwgts[0];
++ sizes[1] = gpwgts[1];
++ sizes[2] = gpwgts[2];
++
++ for( i=2; i>=0; --i )
++ for( j=i+1; j<3; ++j )
++ sizescan[i] += gpwgts[j];
++ for( i=0; i<3; i++ )
++ sizescan[i] -= lpwgts[i];
++
++ for( i=0; i<nvtxs; i++ )
++ {
++ id = where[i];
++ PASSERT(ctrl, id <= 2);
++ sizescan[id]++;
++ PASSERT(ctrl, order[i] == -1);
++ order[i] = graph->gnvtxs - sizescan[id];
++ }
++}
++
++void ElParallelOrder
++( ctrl_t *ctrl, graph_t *graph, idx_t *order, idx_t *sizes )
++{
++ idx_t i, nvtxs;
++
++ nvtxs = graph->nvtxs;
++ iset(nvtxs, -1, order);
++
++ /* graph->where = ismalloc(nvtxs, 0, "ElOrder: graph->where"); */
++ /* If we computed an initial partition with Global_Partition, then we
++ should run the following instead of the above ismalloc of graph->where*/
++ iset(nvtxs, 0, graph->where);
++ gk_free((void **)&graph->match,
++ (void **)&graph->cmap,
++ (void **)&graph->rlens,
++ (void **)&graph->slens,
++ (void **)&graph->rcand, LTERM);
++
++ Order_Partition_Multiple(ctrl, graph);
++
++ ElParallelLabelVertices(ctrl, graph, order, sizes);
++}
++
++void ParMETIS_ComputeVertexSeparator
++( idx_t *vtxdist, idx_t *xadj, idx_t *adjncy,
++ idx_t *p_nseps, idx_t *s_nseps,
++ real_t *ubfrac, idx_t *idbglvl, idx_t *order, idx_t *sizes,
++ MPI_Comm *comm )
++{
++ idx_t i, j, npes, npesNonzero, mype, mypeNonzero, dbglvl, status, haveData;
++ ctrl_t *ctrl;
++ graph_t *graph;
++ MPI_Comm nonzeroComm, nullComm;
++ size_t curmem;
++
++ gkMPI_Comm_size(*comm, &npes);
++ gkMPI_Comm_rank(*comm, &mype);
++
++ if( vtxdist[npes] == 0 )
++ {
++ sizes[0] = 0;
++ sizes[1] = 0;
++ sizes[2] = 0;
++ return;
++ }
++
++ haveData = ( vtxdist[mype+1]-vtxdist[mype] != 0 );
++ if( haveData )
++ gkMPI_Comm_split(*comm, 1, mype, &nonzeroComm);
++ else
++ gkMPI_Comm_split(*comm, MPI_UNDEFINED, 0, &nullComm);
++
++ if( !haveData )
++ {
++ sizes[0] = sizes[1] = sizes[2] = 0;
++ gkMPI_Allreduce(MPI_IN_PLACE, (void *)sizes, 3, IDX_T, MPI_SUM, *comm);
++ return;
++ }
++
++ gkMPI_Comm_size(nonzeroComm, &npesNonzero);
++ gkMPI_Comm_rank(nonzeroComm, &mypeNonzero);
++
++ /* Compress the vtxdist data to make it match the new communicator */
++ j=0;
++ for( i=1; i<npes+1; ++i )
++ if( vtxdist[i] != vtxdist[j] )
++ vtxdist[++j] = vtxdist[i];
++
++ status = METIS_OK;
++ gk_malloc_init();
++ curmem = gk_GetCurMemoryUsed();
++
++ ctrl = SetupCtrl(PARMETIS_OP_KMETIS, NULL, 1, 2, NULL, NULL, nonzeroComm);
++
++ dbglvl = (idbglvl == NULL ? 0 : *idbglvl);
++ ctrl->dbglvl = dbglvl;
++
++ graph = SetupGraph(ctrl, 1, vtxdist, xadj, NULL, NULL, adjncy, NULL, 0);
++ AllocateWSpace(ctrl, 10*graph->nvtxs);
++
++ /* Compute an initial partition: for some reason this improves the quality */
++ ctrl->CoarsenTo = gk_min(vtxdist[npesNonzero]+1,
++ 200*gk_max(npesNonzero,ctrl->nparts));
++ Global_Partition(ctrl, graph);
++
++ /* Compute an ordering */
++ ctrl->optype = PARMETIS_OP_OMETIS;
++ ctrl->partType = ORDER_PARTITION;
++ ctrl->mtype = PARMETIS_MTYPE_GLOBAL;
++ ctrl->rtype = PARMETIS_SRTYPE_2PHASE;
++ ctrl->p_nseps = (p_nseps == NULL ? 1 : *p_nseps);
++ ctrl->s_nseps = (s_nseps == NULL ? 1 : *s_nseps);
++ ctrl->ubfrac = (ubfrac == NULL ? ORDER_UNBALANCE_FRACTION : *ubfrac);
++ ctrl->dbglvl = dbglvl;
++ ctrl->ipart = ISEP_NODE;
++ ctrl->CoarsenTo = gk_min(graph->gnvtxs-1,1500*npesNonzero);
++ ElParallelOrder(ctrl, graph, order, sizes);
++
++ FreeInitialGraphAndRemap(graph);
++
++ /* Pass the data to the early-exiting processes with an allreduce */
++ if( mypeNonzero != 0 )
++ sizes[0] = sizes[1] = sizes[2] = 0;
++ gkMPI_Allreduce(MPI_IN_PLACE, (void*)sizes, 3, IDX_T, MPI_SUM, *comm);
++
++ MPI_Comm_free( &nonzeroComm );
++
++ goto DONE;
++
++DONE:
++ FreeCtrl(&ctrl);
++ if (gk_GetCurMemoryUsed() - curmem > 0) {
++ printf("ParMETIS appears to have a memory leak of %zdbytes. Report this.\n",
++ (ssize_t)(gk_GetCurMemoryUsed() - curmem));
++ }
++ gk_malloc_cleanup(0);
++}
diff --git a/Golden_Repo/p/Pillow-SIMD/Pillow-SIMD-9.2.0-GCCcore-11.3.0.eb b/Golden_Repo/p/Pillow-SIMD/Pillow-SIMD-9.2.0-GCCcore-11.3.0.eb
index 0973b97707984a7eea75cc539851fe5d90593405..c430b0e2e0a330b3d13d741d6d43a13dae684376 100644
--- a/Golden_Repo/p/Pillow-SIMD/Pillow-SIMD-9.2.0-GCCcore-11.3.0.eb
+++ b/Golden_Repo/p/Pillow-SIMD/Pillow-SIMD-9.2.0-GCCcore-11.3.0.eb
@@ -21,7 +21,8 @@ dependencies = [
('libpng', '1.6.37'),
('zlib', '1.2.12'),
('LibTIFF', '4.3.0'),
- ('freetype', '2.12.1')
+ ('freetype', '2.12.1'),
+ ('libwebp', '1.2.4'),
]
use_pip = True
diff --git a/Golden_Repo/p/PostgreSQL/PostgreSQL-14.4-GCCcore-11.3.0.eb b/Golden_Repo/p/PostgreSQL/PostgreSQL-14.4-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..ae344d6e856928432a28dd75605c72a588059245
--- /dev/null
+++ b/Golden_Repo/p/PostgreSQL/PostgreSQL-14.4-GCCcore-11.3.0.eb
@@ -0,0 +1,43 @@
+easyblock = 'ConfigureMake'
+
+name = 'PostgreSQL'
+version = '14.4'
+
+homepage = 'https://www.postgresql.org/'
+description = """PostgreSQL is a powerful, open source object-relational database system.
+ It is fully ACID compliant, has full support for foreign keys,
+ joins, views, triggers, and stored procedures (in multiple languages).
+ It includes most SQL:2008 data types, including INTEGER,
+ NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP.
+ It also supports storage of binary large objects, including pictures,
+ sounds, or video. It has native programming interfaces for C/C++, Java,
+ .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['http://ftp.postgresql.org/pub/source/v%(version)s/']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['ebb58a3ac76b910cd7ca103636d19efdc262cab841e9be00705456813d980955']
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('Bison', '3.8.2'),
+ ('flex', '2.6.4'),
+ ('Perl', '5.34.1'),
+ ('Python', '3.10.4'),
+]
+
+dependencies = [
+ ('libreadline', '8.1.2'),
+ ('zlib', '1.2.12'),
+ ('OpenSSL', '1.1', '', SYSTEM),
+]
+
+configopts = '--with-python --with-openssl'
+
+sanity_check_paths = {
+ 'files': ['bin/psql', 'bin/pg_config', 'lib/libpq.a', 'lib/libpq.%s' % SHLIB_EXT],
+ 'dirs': ['share/postgresql'],
+}
+
+moduleclass = 'data'
diff --git a/Golden_Repo/p/parallel/parallel-20220722-GCCcore-11.3.0.eb b/Golden_Repo/p/parallel/parallel-20220722-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..290d6b575fd418baa51c354919d8b0112226d029
--- /dev/null
+++ b/Golden_Repo/p/parallel/parallel-20220722-GCCcore-11.3.0.eb
@@ -0,0 +1,26 @@
+easyblock = 'ConfigureMake'
+
+name = 'parallel'
+version = '20220722'
+
+homepage = 'https://savannah.gnu.org/projects/parallel/'
+description = """parallel: Build and execute shell commands in parallel"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = [GNU_SOURCE]
+sources = [SOURCELOWER_TAR_BZ2]
+checksums = ['0e4083ac0d850c434598c6dfbf98f3b6dd2cc932a3af9269eb1f9323e43af019']
+
+builddependencies = [('binutils', '2.38')]
+
+dependencies = [('Perl', '5.34.1')]
+
+sanity_check_paths = {
+ 'files': ['bin/parallel'],
+ 'dirs': []
+}
+
+sanity_check_commands = ["parallel --help"]
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/p/patchelf/patchelf-0.15.0-GCCcore-11.3.0.eb b/Golden_Repo/p/patchelf/patchelf-0.15.0-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..44c578da8559b4bdebc56084e278edcdf09e876d
--- /dev/null
+++ b/Golden_Repo/p/patchelf/patchelf-0.15.0-GCCcore-11.3.0.eb
@@ -0,0 +1,27 @@
+easyblock = 'ConfigureMake'
+
+name = 'patchelf'
+version = '0.15.0'
+
+homepage = 'https://github.com/NixOS/patchelf'
+description = """PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://github.com/NixOS/patchelf/archive/']
+sources = ['%(version)s.tar.gz']
+checksums = ['5d1eda9bad4439bb9c0a87fcba198d7c0d372f361e77de41d68d6308062e5000']
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('Autotools', '20220317'),
+]
+
+preconfigopts = "sh bootstrap.sh && "
+
+sanity_check_paths = {
+ 'files': ['bin/patchelf'],
+ 'dirs': ['share'],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/p/pkgconfig/pkgconfig-1.5.5-GCCcore-11.3.0-python.eb b/Golden_Repo/p/pkgconfig/pkgconfig-1.5.5-GCCcore-11.3.0-python.eb
new file mode 100644
index 0000000000000000000000000000000000000000..568e0498ef7796bfd55558c09dcd0c0e392d384b
--- /dev/null
+++ b/Golden_Repo/p/pkgconfig/pkgconfig-1.5.5-GCCcore-11.3.0-python.eb
@@ -0,0 +1,28 @@
+easyblock = 'PythonPackage'
+
+name = 'pkgconfig'
+version = '1.5.5'
+# The -python versionsuffix is used to avoid confusion between
+# pkg-config (the tool) and pkgconfig (the Python wrappers)
+versionsuffix = '-python'
+
+homepage = 'https://github.com/matze/pkgconfig'
+description = """pkgconfig is a Python module to interface with the pkg-config command line tool"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+sources = [SOURCE_TAR_GZ]
+checksums = ['deb4163ef11f75b520d822d9505c1f462761b4309b1bb713d08689759ea8b899']
+
+builddependencies = [('binutils', '2.38')]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('pkgconf', '1.8.0'),
+]
+
+use_pip = True
+download_dep_fail = True
+sanity_pip_check = True
+
+moduleclass = 'devel'
diff --git a/Golden_Repo/p/pocl/pocl-1.8-GCC-11.3.0.eb b/Golden_Repo/p/pocl/pocl-1.8-GCC-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..d9dbdf2fa1dbaa41131f2c6d51de9e2f4553039c
--- /dev/null
+++ b/Golden_Repo/p/pocl/pocl-1.8-GCC-11.3.0.eb
@@ -0,0 +1,46 @@
+easyblock = 'CMakeNinja'
+
+name = 'pocl'
+version = '1.8'
+
+homepage = 'https://portablecl.org'
+description = "Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard"
+
+toolchain = {'name': 'GCC', 'version': '11.3.0'}
+
+source_urls = ['https://github.com/pocl/pocl/archive/']
+sources = ['v%(version)s.tar.gz']
+patches = ['pocl-%(version)s_fix-header-install.patch']
+checksums = [
+ '0f63377ae1826e16e90038fc8e7f65029be4ff6f9b059f6907174b5c0d1f8ab2', # v1.8.tar.gz
+ '97dc45437ae7464bda9f13088720482804b8a19a4e71067196daa86af487222d', # pocl-1.8_fix-header-install.patch
+]
+
+builddependencies = [
+ ('CMake', '3.23.1'),
+ ('Ninja', '1.10.2'),
+ ('pkgconf', '1.8.0'),
+]
+
+dependencies = [
+ ('Clang', '13.0.1'),
+ ('hwloc', '2.7.1'),
+ ('libtool', '2.4.7'),
+ ('libxml2', '2.9.13'),
+]
+
+separate_build_dir = True
+
+# disable attempt to find an ICD loader, always build libOpenCL.so
+configopts = "-DENABLE_ICD=0 -DINSTALL_OPENCL_HEADERS=1 "
+# make sure we use the easybuild Clang
+configopts += "-DWITH_LLVM_CONFIG=$EBROOTCLANG/bin/llvm-config -DSTATIC_LLVM=ON "
+# avoid host CPU auto-detection (which may fail on recent CPUs)
+configopts += "-DLLC_HOST_CPU=native "
+
+sanity_check_paths = {
+ 'files': ['bin/poclcc', 'lib64/libOpenCL.%s' % SHLIB_EXT],
+ 'dirs': ['include/CL', 'lib64/pkgconfig'],
+}
+
+moduleclass = 'lib'
diff --git a/Golden_Repo/p/pocl/pocl-1.8_fix-header-install.patch b/Golden_Repo/p/pocl/pocl-1.8_fix-header-install.patch
new file mode 100644
index 0000000000000000000000000000000000000000..aa74658080d20bb4ce13d3d351db81d08de3a5f6
--- /dev/null
+++ b/Golden_Repo/p/pocl/pocl-1.8_fix-header-install.patch
@@ -0,0 +1,24 @@
+see https://github.com/pocl/pocl/issues/1000 + https://github.com/pocl/pocl/pull/1001
+
+From f5a841706edd5b201274337660528d75797031bc Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Andr=C3=A9=20Gem=C3=BCnd?=
+ <andre.gemuend@scai.fraunhofer.de>
+Date: Thu, 11 Nov 2021 09:38:24 +0100
+Subject: [PATCH] Add missing cl_ext_pocl.h to install.
+
+---
+ include/CL/CMakeLists.txt | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/include/CL/CMakeLists.txt b/include/CL/CMakeLists.txt
+index 63e6b1ba4..eb4f4773d 100644
+--- a/include/CL/CMakeLists.txt
++++ b/include/CL/CMakeLists.txt
+@@ -35,6 +35,7 @@ if(INSTALL_OPENCL_HEADERS)
+ cl_ext.h
+ cl_egl.h
+ cl_ext_intel.h
++ cl_ext_pocl.h
+ cl_gl.h
+ cl_gl_ext.h
+ cl_half.h
diff --git a/Golden_Repo/p/pretty-yaml/pretty-yaml-21.10.1-GCCcore-11.3.0.eb b/Golden_Repo/p/pretty-yaml/pretty-yaml-21.10.1-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..cea99c44824157a0742552e0743f5335d2bdb362
--- /dev/null
+++ b/Golden_Repo/p/pretty-yaml/pretty-yaml-21.10.1-GCCcore-11.3.0.eb
@@ -0,0 +1,31 @@
+easyblock = 'PythonPackage'
+
+name = 'pretty-yaml'
+local_mod = 'pyaml'
+version = '21.10.1'
+
+homepage = 'https://github.com/mk-fg/pretty-yaml'
+description = """PyYAML-based python module to produce pretty and readable YAML-serialized data.
+This module is for serialization only, see ruamel.yaml module for literate YAML
+parsing (keeping track of comments, spacing, line/column numbers of values, etc)."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://pypi.python.org/packages/source/p/%s/' % local_mod]
+sources = ['%s-%%(version)s.tar.gz' % local_mod]
+checksums = ['c6519fee13bf06e3bb3f20cacdea8eba9140385a7c2546df5dbae4887f768383']
+
+builddependencies = [('binutils', '2.38')]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('PyYAML', '6.0'),
+]
+
+use_pip = True
+download_dep_fail = True
+sanity_pip_check = True
+
+options = {'modulename': local_mod}
+
+moduleclass = 'lib'
diff --git a/Golden_Repo/p/psmpi-settings/psmpi-settings-5.6-CUDA.eb b/Golden_Repo/p/psmpi-settings/psmpi-settings-5-CUDA.eb
similarity index 98%
rename from Golden_Repo/p/psmpi-settings/psmpi-settings-5.6-CUDA.eb
rename to Golden_Repo/p/psmpi-settings/psmpi-settings-5-CUDA.eb
index ddb203c2252b0b17c1d071d679a9a141b04e143a..f1f0557309f4e69160bcac47c44921b0f323a853 100644
--- a/Golden_Repo/p/psmpi-settings/psmpi-settings-5.6-CUDA.eb
+++ b/Golden_Repo/p/psmpi-settings/psmpi-settings-5-CUDA.eb
@@ -1,7 +1,7 @@
easyblock = 'SystemBundle'
name = 'psmpi-settings'
-version = '5.6'
+version = '5'
versionsuffix = 'CUDA'
homepage = ''
diff --git a/Golden_Repo/p/psmpi-settings/psmpi-settings-5.6-UCX.eb b/Golden_Repo/p/psmpi-settings/psmpi-settings-5-UCX.eb
similarity index 95%
rename from Golden_Repo/p/psmpi-settings/psmpi-settings-5.6-UCX.eb
rename to Golden_Repo/p/psmpi-settings/psmpi-settings-5-UCX.eb
index 7e82e4a74b46d69084d43c8d59ea474222e92a9f..3f0f135e759d20f791754b5a4bbbeb136772a12d 100644
--- a/Golden_Repo/p/psmpi-settings/psmpi-settings-5.6-UCX.eb
+++ b/Golden_Repo/p/psmpi-settings/psmpi-settings-5-UCX.eb
@@ -1,7 +1,7 @@
easyblock = 'SystemBundle'
name = 'psmpi-settings'
-version = '5.6'
+version = '5'
versionsuffix = 'UCX'
homepage = ''
diff --git a/Golden_Repo/p/psmpi/psmpi-5.6.0-1-GCC-11.3.0.eb b/Golden_Repo/p/psmpi/psmpi-5.7.0-1-GCC-11.3.0.eb
similarity index 91%
rename from Golden_Repo/p/psmpi/psmpi-5.6.0-1-GCC-11.3.0.eb
rename to Golden_Repo/p/psmpi/psmpi-5.7.0-1-GCC-11.3.0.eb
index 26f4f9221fe486e2b2ab5a6104c4981288fc9e0a..0673d21762810ae538f1bcd39c7ebb7a8dbad1d2 100644
--- a/Golden_Repo/p/psmpi/psmpi-5.6.0-1-GCC-11.3.0.eb
+++ b/Golden_Repo/p/psmpi/psmpi-5.7.0-1-GCC-11.3.0.eb
@@ -1,5 +1,5 @@
name = 'psmpi'
-version = '5.6.0-1'
+version = '5.7.0-1'
homepage = 'https://github.com/ParaStation/psmpi2'
description = """ParaStation MPI is an open source high-performance MPI 3.0 implementation,
@@ -12,8 +12,8 @@ toolchain = {'name': 'GCC', 'version': '11.3.0'}
sources = [SOURCE_TAR_GZ]
source_urls = ['https://github.com/ParaStation/psmpi/archive/']
checksums = [
- # psmpi-5.6.0-1.tar.gz
- 'bb532c9cc49da31384bb7d73faccf0be224317bc5b055723095c3965f7ad6209',
+ # psmpi-5.7.0-1.tar.gz
+ '0c1c8556afedfb08cd612f379ddb6327ef1bb0867d6f6fed3d610f3d8c790883',
'978eb3223c978477c40987f745c07fda26ccbad2f468616faf92f0d71b81a156', # psmpi_shebang.patch
# psmpi-5.5.0-1_ime.patch
'c2418b9511560dca197242508de9c7b6b117122912b6d3a4aa18398834f465ff',
diff --git a/Golden_Repo/p/psmpi/psmpi-5.6.0-1-NVHPC-22.11.eb b/Golden_Repo/p/psmpi/psmpi-5.7.0-1-NVHPC-22.11.eb
similarity index 91%
rename from Golden_Repo/p/psmpi/psmpi-5.6.0-1-NVHPC-22.11.eb
rename to Golden_Repo/p/psmpi/psmpi-5.7.0-1-NVHPC-22.11.eb
index 07d09cdabbc5b0c39fa76e19570f92b47fc9dfd7..70c5404b67724cae1ef03be50ff593f2cbcec683 100644
--- a/Golden_Repo/p/psmpi/psmpi-5.6.0-1-NVHPC-22.11.eb
+++ b/Golden_Repo/p/psmpi/psmpi-5.7.0-1-NVHPC-22.11.eb
@@ -1,5 +1,5 @@
name = 'psmpi'
-version = '5.6.0-1'
+version = '5.7.0-1'
homepage = 'https://github.com/ParaStation/psmpi2'
description = """ParaStation MPI is an open source high-performance MPI 3.0 implementation,
@@ -12,8 +12,8 @@ toolchain = {'name': 'NVHPC', 'version': '22.11'}
sources = [SOURCE_TAR_GZ]
source_urls = ['https://github.com/ParaStation/psmpi/archive/']
checksums = [
- # psmpi-5.6.0-1.tar.gz
- 'bb532c9cc49da31384bb7d73faccf0be224317bc5b055723095c3965f7ad6209',
+ # psmpi-5.7.0-1.tar.gz
+ '0c1c8556afedfb08cd612f379ddb6327ef1bb0867d6f6fed3d610f3d8c790883',
'978eb3223c978477c40987f745c07fda26ccbad2f468616faf92f0d71b81a156', # psmpi_shebang.patch
# psmpi-5.5.0-1_ime.patch
'c2418b9511560dca197242508de9c7b6b117122912b6d3a4aa18398834f465ff',
diff --git a/Golden_Repo/p/psmpi/psmpi-5.6.0-1-intel-compilers-2022.1.0.eb b/Golden_Repo/p/psmpi/psmpi-5.7.0-1-intel-compilers-2022.1.0.eb
similarity index 91%
rename from Golden_Repo/p/psmpi/psmpi-5.6.0-1-intel-compilers-2022.1.0.eb
rename to Golden_Repo/p/psmpi/psmpi-5.7.0-1-intel-compilers-2022.1.0.eb
index 2d420ef264e2d80b766675c60cf1888f180ae98b..ba1eecdd475c808b2cdbe9d9653e597f2152c405 100644
--- a/Golden_Repo/p/psmpi/psmpi-5.6.0-1-intel-compilers-2022.1.0.eb
+++ b/Golden_Repo/p/psmpi/psmpi-5.7.0-1-intel-compilers-2022.1.0.eb
@@ -1,5 +1,5 @@
name = 'psmpi'
-version = '5.6.0-1'
+version = '5.7.0-1'
homepage = 'https://github.com/ParaStation/psmpi2'
description = """ParaStation MPI is an open source high-performance MPI 3.0 implementation,
@@ -12,8 +12,8 @@ toolchain = {'name': 'intel-compilers', 'version': '2022.1.0'}
sources = [SOURCE_TAR_GZ]
source_urls = ['https://github.com/ParaStation/psmpi/archive/']
checksums = [
- # psmpi-5.6.0-1.tar.gz
- 'bb532c9cc49da31384bb7d73faccf0be224317bc5b055723095c3965f7ad6209',
+ # psmpi-5.7.0-1.tar.gz
+ '0c1c8556afedfb08cd612f379ddb6327ef1bb0867d6f6fed3d610f3d8c790883',
'978eb3223c978477c40987f745c07fda26ccbad2f468616faf92f0d71b81a156', # psmpi_shebang.patch
# psmpi-5.5.0-1_ime.patch
'c2418b9511560dca197242508de9c7b6b117122912b6d3a4aa18398834f465ff',
diff --git a/Golden_Repo/p/pytest-xdist/pytest-xdist-2.5.0-GCCcore-11.3.0.eb b/Golden_Repo/p/pytest-xdist/pytest-xdist-2.5.0-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..9d96c47ef05d072b60b59dda1a237cb733bea35f
--- /dev/null
+++ b/Golden_Repo/p/pytest-xdist/pytest-xdist-2.5.0-GCCcore-11.3.0.eb
@@ -0,0 +1,62 @@
+easyblock = 'PythonBundle'
+
+name = 'pytest-xdist'
+version = '2.5.0'
+
+homepage = 'https://github.com/pytest-dev/pytest-xdist'
+description = """xdist: pytest distributed testing plugin
+
+The pytest-xdist plugin extends pytest with some unique test execution modes:
+
+ * test run parallelization: if you have multiple CPUs or hosts you
+ can use those for a combined test run. This allows to speed up
+ development or to use special resources of remote machines.
+
+ * --looponfail: run your tests repeatedly in a subprocess. After
+ each run pytest waits until a file in your project changes and
+ then re-runs the previously failing tests. This is repeated
+ until all tests pass after which again a full run is
+ performed.
+
+ * Multi-Platform coverage: you can specify different Python
+ interpreters or different platforms and run tests in parallel on
+ all of them.
+
+Before running tests remotely, pytest efficiently “rsyncs” your
+program source code to the remote place. All test results are reported
+back and displayed to your local terminal. You may specify different
+Python versions and interpreters."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+builddependencies = [('binutils', '2.38')]
+
+dependencies = [
+ ('Python', '3.10.4'),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+exts_list = [
+ ('apipkg', '1.5', {
+ 'checksums': ['37228cda29411948b422fae072f57e31d3396d2ee1c9783775980ee9c9990af6'],
+ }),
+ ('execnet', '1.9.0', {
+ 'checksums': ['8f694f3ba9cc92cab508b152dcfe322153975c29bda272e2fd7f3f00f36e47c5'],
+ }),
+ ('pytest-forked', '1.4.0', {
+ 'checksums': ['8b67587c8f98cbbadfdd804539ed5455b6ed03802203485dd2f53c1422d7440e'],
+ }),
+ (name, version, {
+ 'modulename': 'xdist',
+ 'checksums': ['4580deca3ff04ddb2ac53eba39d76cb5dd5edeac050cb6fbc768b0dd712b4edf'],
+ }),
+]
+
+sanity_check_paths = {
+ 'files': [],
+ 'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/p/pyvips/pyvips-2.2.1-foss-2022a.eb b/Golden_Repo/p/pyvips/pyvips-2.2.1-foss-2022a.eb
new file mode 100644
index 0000000000000000000000000000000000000000..d232a769804d77ecdd8530edc14065e907538ca4
--- /dev/null
+++ b/Golden_Repo/p/pyvips/pyvips-2.2.1-foss-2022a.eb
@@ -0,0 +1,31 @@
+easyblock = 'PythonPackage'
+
+name = 'pyvips'
+version = '2.2.1'
+
+homepage = 'https://github.com/libvips/pyvips/tags'
+description = """Pyvips is the python bindings for libvips: a demand-driven,
+ horizontally threaded image processing library."""
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+source_urls = ['https://github.com/libvips/pyvips/archive']
+sources = ['v%(version)s.tar.gz']
+checksums = ['37a0fc33556a1057ba05dc5a6f3029975539c5f0b63bd84ecd6eae3862898103']
+
+builddependencies = [('binutils', '2.38')]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('OpenSlide', '3.4.1', '-largefiles'),
+ ('libvips', '8.13.3'),
+ ('pkgconfig', '1.5.5', '-python'),
+]
+
+use_pip = True
+download_dep_fail = True
+sanity_pip_check = True
+
+options = {'modulename': 'pyvips'}
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/q/Qt5/Qt5-5.15.5-GCCcore-11.3.0.eb b/Golden_Repo/q/Qt5/Qt5-5.15.5-GCCcore-11.3.0.eb
index a9d014e9d7564a2503552ee294f4438429ac2c92..70ab697d8314603836c47c02093f92a8f4fb5f20 100644
--- a/Golden_Repo/q/Qt5/Qt5-5.15.5-GCCcore-11.3.0.eb
+++ b/Golden_Repo/q/Qt5/Qt5-5.15.5-GCCcore-11.3.0.eb
@@ -23,11 +23,16 @@ patches = [
'Qt5-5.15.5_fix-qtwebegine-HarfBuzz-3.x.patch',
]
checksums = [
- '5a97827bdf9fd515f43bc7651defaf64fecb7a55e051c79b8f80510d0e990f06', # qt-everywhere-opensource-src-5.15.5.tar.xz
- '6f46005f056bf9e6ff3e5d012a874d18ee03b33e685941f2979c970be91a9dbc', # Qt5-5.13.1_fix-avx2.patch
- '511ca9c0599ceb1989f73d8ceea9199c041512d3a26ee8c5fd870ead2c10cb63', # Qt5-5.13.1_fix-qmake-libdir.patch
- '0b9defb7ce75314d85bebe07e143db7f7de316fec64c17cbd13f7eec5d2d1afa', # Qt5-5.14.1_fix-OF-Gentoo.patch
- '599cc94535dc276a5d97e002c81907c74ead9dc8d55f35567017fb7a491aaf01', # Qt5-5.15.5_fix-qtwebegine-HarfBuzz-3.x.patch
+ # qt-everywhere-opensource-src-5.15.5.tar.xz
+ '5a97827bdf9fd515f43bc7651defaf64fecb7a55e051c79b8f80510d0e990f06',
+ # Qt5-5.13.1_fix-avx2.patch
+ '6f46005f056bf9e6ff3e5d012a874d18ee03b33e685941f2979c970be91a9dbc',
+ # Qt5-5.13.1_fix-qmake-libdir.patch
+ '511ca9c0599ceb1989f73d8ceea9199c041512d3a26ee8c5fd870ead2c10cb63',
+ # Qt5-5.14.1_fix-OF-Gentoo.patch
+ '0b9defb7ce75314d85bebe07e143db7f7de316fec64c17cbd13f7eec5d2d1afa',
+ # Qt5-5.15.5_fix-qtwebegine-HarfBuzz-3.x.patch
+ '599cc94535dc276a5d97e002c81907c74ead9dc8d55f35567017fb7a491aaf01',
]
builddependencies = [
@@ -55,7 +60,7 @@ dependencies = [
('fontconfig', '2.14.0'),
('DBus', '1.14.0'),
('libevent', '2.1.12'),
- ('libGLU', '9.0.2'),
+ ('OpenGL', '2022a'),
('libjpeg-turbo', '2.1.3'),
('NSS', '3.79'),
('snappy', '1.1.9'),
diff --git a/Golden_Repo/s/SIONlib/SIONlib-1.7.7-GCCcore-11.3.0-tools.eb b/Golden_Repo/s/SIONlib/SIONlib-1.7.7-GCCcore-11.3.0-tools.eb
new file mode 100644
index 0000000000000000000000000000000000000000..425c404cee4407cd562b83719abd076e8699971e
--- /dev/null
+++ b/Golden_Repo/s/SIONlib/SIONlib-1.7.7-GCCcore-11.3.0-tools.eb
@@ -0,0 +1,36 @@
+easyblock = "ConfigureMake"
+name = "SIONlib"
+version = "1.7.7"
+versionsuffix = '-tools'
+
+homepage = 'http://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html'
+description = """SIONlib is a scalable I/O library for parallel access to task-local files.
+The library not only supports writing and reading binary data to or from several thousands of
+processors into a single or a small number of physical files, but also provides global open
+and close functions to access SIONlib files in parallel. This package provides a stripped-down
+installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols
+to avoid conflicts when an application using SIONlib itself is linked against a tool requiring
+a different SIONlib version.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['http://apps.fz-juelich.de/jsc/sionlib/download.php?version=%(version)sl']
+sources = ['sionlib-%(version)sl.tar.gz']
+checksums = ['3b5072d8a32a9e9858d85dfe4dc01e7cfdbf54cdaa60660e760b634ee08d8a4c']
+
+builddependencies = [
+ ('binutils', '2.38')
+]
+
+hidden = True
+
+configopts = '--disable-mic --disable-cxx --disable-fortran --disable-ompi'
+
+sanity_check_paths = {
+ 'files': ['bin/sionconfig'] +
+ ['lib/lib%s_64.a' % x for x in ['lsioncom', 'lsiongen', 'lsionser']],
+ 'dirs': []
+}
+
+moduleclass = 'lib'
diff --git a/Golden_Repo/s/SWIG/SWIG-4.0.2-GCCcore-11.3.0.eb b/Golden_Repo/s/SWIG/SWIG-4.0.2-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..f1a2758986f91f3d63aecd2ad7fec9131ac932c1
--- /dev/null
+++ b/Golden_Repo/s/SWIG/SWIG-4.0.2-GCCcore-11.3.0.eb
@@ -0,0 +1,24 @@
+name = 'SWIG'
+version = '4.0.2'
+
+homepage = 'http://www.swig.org/'
+description = """SWIG is a software development tool that connects programs written in C and C++ with
+ a variety of high-level programming languages."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['d53be9730d8d58a16bf0cbd1f8ac0c0c3e1090573168bfa151b01eb47fa906fc']
+
+builddependencies = [('binutils', '2.38')]
+
+dependencies = [
+ ('zlib', '1.2.12'),
+ ('PCRE', '8.45'),
+]
+
+configopts = '--without-alllang --with-boost=no'
+
+moduleclass = 'devel'
diff --git a/Golden_Repo/s/strace/strace-6.1-GCCcore-11.3.0.eb b/Golden_Repo/s/strace/strace-6.1-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..f4441d492c393bc7be2ec544f8b443de5fc97a63
--- /dev/null
+++ b/Golden_Repo/s/strace/strace-6.1-GCCcore-11.3.0.eb
@@ -0,0 +1,31 @@
+easyblock = 'ConfigureMake'
+
+name = 'strace'
+version = '6.1'
+
+homepage = 'https://strace.io/'
+description = """
+strace is a diagnostic, debugging and instructional userspace utility for Linux. It is used to monitor and tamper with
+interactions between processes and the Linux kernel, which include system calls, signal deliveries, and changes of
+process state.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = [
+ 'https://github.com/strace/strace/releases/download/v%(version)s/']
+sources = [SOURCE_TAR_XZ]
+checksums = ['2579e9cec37dbb786f6ea0bebd15f40dd561ef2bde2a2a2ecdce5963b01859fd']
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+sanity_check_paths = {
+ 'files': ['bin/strace-log-merge', 'bin/strace'],
+ 'dirs': ['share']
+}
+
+sanity_check_commands = ['strace --help']
+
+moduleclass = 'system'
diff --git a/Golden_Repo/t/TotalView/TotalView-2022.4.27-GCCcore-11.3.0.eb b/Golden_Repo/t/TotalView/TotalView-2022.4.27-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..4cdecf2fb1a66118a7f0c3110303541074ff4a20
--- /dev/null
+++ b/Golden_Repo/t/TotalView/TotalView-2022.4.27-GCCcore-11.3.0.eb
@@ -0,0 +1,64 @@
+# This is an easyconfig file for EasyBuild, see
+# https://github.com/hpcugent/easybuild
+# Copyright:: Copyright 2014 Juelich Supercomputing Centre, Germany
+# Authors:: Alexandre Strube <surak@surak.eti.br>
+# License:: New BSD
+#
+# This work is based from experiences from the UNITE project
+# http://apps.fz-juelich.de/unite/
+##
+
+name = "TotalView"
+version = "2022.4.27"
+
+homepage = 'http://www.roguewave.com/products-services/totalview'
+
+description = """TotalView breaks down barriers to understanding what's going
+ on with your high-performance computing (HPC) and supercomputing applications.
+ Purpose-built for multicore and parallel computing, TotalView provides a set
+ of tools providing unprecedented control over processes and thread execution,
+ along with deep visibility into program states and data.
+
+ By allowing the simultaneous debugging of many processes and threads in a
+ single window, you get complete control over program execution: running,
+ stepping, and halting line-by-line through code within a single thread or
+ within arbitrary groups of processes or threads. You can also work backwards
+ from failure through reverse debugging, isolating the root cause faster by
+ eliminating the need to repeatedly restart the application, reproduce and
+ troubleshoot difficult problems that can occur in concurrent programs that
+ take advantage of threads, OpenMP, MPI, GPUs, or coprocessors.
+
+ With customizable displays of the state of your running program, memory leaks,
+ deadlocks, and race conditions are things of the past. Whether you're a
+ scientific and technical computing veteran, or new to the development
+ challenges of multicore or parallel applications, TotalView gives you the
+ insight to find and correct errors quickly, validate prototypes early, verify
+ calculations accurately, and above all, certify code correctly.
+
+ TotalView works with C, C++, and Fortran applications written for Linux
+ (including the Cray and Blue Gene platforms), UNIX, Mac OS X, and Xeon Phi
+ coprocessor, and supports OpenMP, MPI, and OpenACC / CUDA.
+ """
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+
+dependencies = [
+ ('X11', '20220504'),
+]
+
+sources = [
+ '%(namelower)s_%(version)s_linux_x86-64.tar',
+ '%(namelower)s.%(version)s-doc.tar',
+]
+checksums = [
+ {'totalview_2022.4.27_linux_x86-64.tar': '7c5b0f646d21287d35a191ccebc4dfea2bc9971962f1ccbefe53f3e57f7164d4'},
+ {'totalview.2022.4.27-doc.tar': '66644f577394a73be546c614814c9247eaaf9356089e8fb4b73d23b6c80ecf67'},
+]
+
+sanity_check_paths = {
+ 'files': ["toolworks/%(namelower)s.%(version)s/bin/totalview"],
+ 'dirs': []
+}
+
+moduleclass = 'debugger'
diff --git a/Golden_Repo/t/texlive/texlive-20220321-GCCcore-11.3.0.eb b/Golden_Repo/t/texlive/texlive-20220321-GCCcore-11.3.0.eb
index b7569638ad93fc640e978490a3a34426fdb0e7ae..c3a082a91d95dcd3a3b94630eb5998c9daf3a4e5 100644
--- a/Golden_Repo/t/texlive/texlive-20220321-GCCcore-11.3.0.eb
+++ b/Golden_Repo/t/texlive/texlive-20220321-GCCcore-11.3.0.eb
@@ -29,7 +29,7 @@ dependencies = [
('binutils', '2.38'),
('X11', '20220504'),
('libpng', '1.6.37'),
- ('libGLU', '9.0.2'),
+ ('OpenGL', '2022a'),
('Perl', '5.34.1'),
('HarfBuzz', '4.2.1'),
('poppler', '22.10.0'),
diff --git a/Golden_Repo/t/torchvision/torchvision-0.13.1-foss-2022a-CUDA-11.7.eb b/Golden_Repo/t/torchvision/torchvision-0.13.1-foss-2022a-CUDA-11.7.eb
new file mode 100644
index 0000000000000000000000000000000000000000..6967bb91936bfc9b9d9ac378b67304b55133eeb4
--- /dev/null
+++ b/Golden_Repo/t/torchvision/torchvision-0.13.1-foss-2022a-CUDA-11.7.eb
@@ -0,0 +1,23 @@
+name = 'torchvision'
+version = '0.13.1'
+versionsuffix = '-CUDA-%(cudaver)s'
+
+homepage = 'https://github.com/pytorch/vision'
+description = " Datasets, Transforms and Models specific to Computer Vision"
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+source_urls = ['https://github.com/pytorch/vision/archive']
+sources = ['v%(version)s.tar.gz']
+checksums = ['c32fab734e62c7744dadeb82f7510ff58cc3bca1189d17b16aa99b08afc42249']
+
+builddependencies = [('CMake', '3.23.1')]
+
+dependencies = [
+ ('CUDA', '11.7', '', SYSTEM),
+ ('Python', '3.10.4'),
+ ('Pillow-SIMD', '9.2.0'),
+ ('PyTorch', '1.12.0', '-CUDA-%(cudaver)s'),
+]
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/u/UDUNITS/UDUNITS-2.2.28-GCCcore-11.3.0.eb b/Golden_Repo/u/UDUNITS/UDUNITS-2.2.28-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..e07aab5a73a46cceb63c2ccfb695419f9f0ff891
--- /dev/null
+++ b/Golden_Repo/u/UDUNITS/UDUNITS-2.2.28-GCCcore-11.3.0.eb
@@ -0,0 +1,44 @@
+##
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+#
+# Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University
+# Authors:: Fotis Georgatos <fotis@cern.ch>, Kenneth Hoste (Ghent University)
+# License:: MIT/GPL
+# $Id$
+#
+# This work implements a part of the HPCBIOS project and is a component of the policy:
+# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html
+##
+
+easyblock = 'ConfigureMake'
+
+name = 'UDUNITS'
+version = '2.2.28'
+
+homepage = 'https://www.unidata.ucar.edu/software/udunits/'
+description = """UDUNITS supports conversion of unit specifications between formatted and binary forms,
+ arithmetic manipulation of units, and conversion of values between compatible scales of measurement."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = [
+ 'https://artifacts.unidata.ucar.edu/repository/downloads-udunits/%(version)s/',
+ 'https://sources.easybuild.io/u/UDUNITS/',
+]
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['590baec83161a3fd62c00efa66f6113cec8a7c461e3f61a5182167e0cc5d579e']
+
+builddependencies = [('binutils', '2.38')]
+
+dependencies = [('expat', '2.4.8')]
+
+sanity_check_paths = {
+ 'files': ['bin/udunits2', 'include/converter.h', 'include/udunits2.h', 'include/udunits.h',
+ 'lib/libudunits2.a', 'lib/libudunits2.%s' % SHLIB_EXT],
+ 'dirs': ['share'],
+}
+
+parallel = 1
+
+moduleclass = 'phys'
diff --git a/Golden_Repo/v/Vampir/Vampir-10.2.0.eb b/Golden_Repo/v/Vampir/Vampir-10.2.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..0a4e37c6d3a3365c384f8efea22cdaa393b09034
--- /dev/null
+++ b/Golden_Repo/v/Vampir/Vampir-10.2.0.eb
@@ -0,0 +1,45 @@
+# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild
+# Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany
+# Authors:: Bernd Mohr <b.mohr@fz-juelich.de>
+# License:: New BSD
+#
+# This work is based from experiences from the UNITE project
+# http://apps.fz-juelich.de/unite/
+##
+
+# For using $SYSTEMNAME to determine license path. The local prefix is to appease the checker
+import os as local_os
+
+easyblock = 'Binary'
+
+name = "Vampir"
+version = "10.2.0"
+local_archsuffix = "-linux-x86_64"
+
+homepage = 'http://www.vampir.eu'
+description = """The VAMPIR software tool provides an easy-to-use framework that enables
+developers to quickly display and analyze arbitrary program behavior at any level of detail.
+The tool suite implements optimized event analysis algorithms and customizable displays that
+enable fast and interactive rendering of very complex performance monitoring data.
+
+"""
+
+toolchain = SYSTEM
+
+sources = ['vampir-%s%s-setup.sh' % (version, local_archsuffix)]
+checksums = ['226cc10804de45a6d1860fd71c79de1becc4ab2495e41258a95489b2f4b953c2']
+
+install_cmd = './vampir-%(version)s-linux-x86_64-setup.sh --silent --instdir=%(installdir)s'
+
+sanity_check_paths = {
+ 'files': ["bin/vampir", "doc/vampir-manual.pdf"],
+ 'dirs': []
+}
+
+local_licdir = '/p/software/%s/licenses/vampir/vampir.license' % local_os.environ['SYSTEMNAME']
+
+modextravars = {
+ 'VAMPIR_LICENSE': '/p/software/%s/licenses/vampir/vampir.license' % local_os.environ['SYSTEMNAME'],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/v/VampirServer/VampirServer-10.2.0-gpsmpi-2022a.eb b/Golden_Repo/v/VampirServer/VampirServer-10.2.0-gpsmpi-2022a.eb
new file mode 100644
index 0000000000000000000000000000000000000000..d38555c06812fabba5414b9c893c64c05128b599
--- /dev/null
+++ b/Golden_Repo/v/VampirServer/VampirServer-10.2.0-gpsmpi-2022a.eb
@@ -0,0 +1,64 @@
+# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild
+# Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany
+# Authors:: Bernd Mohr <b.mohr@fz-juelich.de>
+# License:: New BSD
+#
+# This work is based from experiences from the UNITE project
+# http://apps.fz-juelich.de/unite/
+##
+
+# For using $SYSTEMNAME to determine license path. The local prefix is to appease the checker
+import os as local_os
+
+easyblock = 'Binary'
+
+name = "VampirServer"
+version = "10.2.0"
+
+homepage = 'http://www.vampir.eu'
+description = """The VAMPIR software tool provides an easy-to-use framework that enables
+developers to quickly display and analyze arbitrary program behavior at any level of detail.
+The tool suite implements optimized event analysis algorithms and customizable displays that
+enable fast and interactive rendering of very complex performance monitoring data.
+"""
+
+usage = """
+To start VampirServer
+module load Vampir VampirServer
+vampir &
+BATCH_OPT="--account=<budget> --partition=<partition>" vampirserver start -n 4 mpi
+(note server + port + server_id)
+- Use it
+Vampir GUI-> open other -> remote file -> server + port
+- To stop VampirServer
+vampirserver stop <server_id>
+"""
+
+toolchain = {'name': 'gpsmpi', 'version': '2022a'}
+
+toolchainopts = {"usempi": True}
+
+sources = ['vampirserver-%s-linux-x86_64-setup.sh' % (version)]
+checksums = ['49c70fa0f4a3cd82b607d999da7af4411a88ece4bb5d9dfb2b3c89611d163064']
+
+install_cmd = ('./vampirserver-%(version)s-linux-x86_64-setup.sh --silent --instdir=%(installdir)s '
+ '&& %(installdir)s/bin/vampirserver config --silent')
+
+sanity_check_paths = {
+ 'files': ["bin/vampirserver", "doc/vampirserver-manual.pdf"],
+ 'dirs': []
+}
+
+# Remove Cray-specific 'ap' launcher,
+# use SLURM launcher as MPI launcher and default
+postinstallcmds = [
+ 'rm %(installdir)s/etc/server/launcher/ap',
+ '''sed -i s/'BATCH_OPT=""'/'#BATCH_OPT=""'/g %(installdir)s/etc/server/launcher/custom/slurm''',
+ 'cp %(installdir)s/etc/server/launcher/custom/slurm %(installdir)s/etc/server/launcher/mpi',
+]
+
+modextravars = {
+ 'VAMPIR_LICENSE': '/p/software/%s/licenses/vampir/vampir.license' % local_os.environ['SYSTEMNAME'],
+}
+
+moduleclass = 'perf'
diff --git a/Golden_Repo/x/XGBoost/XGBoost-1.7.1-foss-2022a.eb b/Golden_Repo/x/XGBoost/XGBoost-1.7.1-foss-2022a.eb
new file mode 100644
index 0000000000000000000000000000000000000000..5a1b0de4cdcad812bacac485cb44bd23a2c917a5
--- /dev/null
+++ b/Golden_Repo/x/XGBoost/XGBoost-1.7.1-foss-2022a.eb
@@ -0,0 +1,29 @@
+easyblock = 'PythonPackage'
+
+name = 'XGBoost'
+version = '1.7.1'
+
+homepage = 'https://github.com/dmlc/xgboost'
+description = """XGBoost is an optimized distributed gradient boosting library designed to be highly efficient,
+ flexible and portable."""
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['bb302c5c33e14bab94603940987940f29203ecb8767a7a719daf579fbfaace64']
+
+builddependencies = [('CMake', '3.23.1')]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('SciPy-bundle', '2022.05', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+]
+
+use_pip = True
+download_dep_fail = True
+sanity_pip_check = True
+
+# use the parallel parameter from EB instead of total procs in the system
+preinstallopts = "sed -i 's/nproc = os.cpu_count.*$/nproc = %(parallel)s/' setup.py &&"
+
+moduleclass = 'lib'
diff --git a/Golden_Repo/x/xprop/xprop-1.2.5-GCCcore-11.3.0.eb b/Golden_Repo/x/xprop/xprop-1.2.5-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..2d806a829fce5abd0260e808b5b6188f73cd98e8
--- /dev/null
+++ b/Golden_Repo/x/xprop/xprop-1.2.5-GCCcore-11.3.0.eb
@@ -0,0 +1,32 @@
+easyblock = 'ConfigureMake'
+
+name = 'xprop'
+version = '1.2.5'
+
+homepage = "https://www.x.org/wiki/"
+description = """The xprop utility is for displaying window and font properties in an X server.
+ One window or font is selected using the command line arguments or possibly
+ in the case of a window, by clicking on the desired window. A list of
+ properties is then given, possibly with formatting information."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://ftp.x.org/archive/individual/app/']
+sources = [SOURCE_TAR_GZ]
+checksums = ['b7bf6b6be6cf23e7966a153fc84d5901c14f01ee952fbd9d930aa48e2385d670']
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('pkgconf', '1.8.0'),
+]
+
+dependencies = [
+ ('X11', '20220504'),
+]
+
+sanity_check_paths = {
+ 'files': ['bin/xprop'],
+ 'dirs': [],
+}
+
+moduleclass = 'vis'
diff --git a/Golden_Repo/z/zarr/zarr-2.13.3-foss-2022a.eb b/Golden_Repo/z/zarr/zarr-2.13.3-foss-2022a.eb
new file mode 100644
index 0000000000000000000000000000000000000000..b20247a5b8e7dfe37eb5c587b6af4ad2c7d5bcb9
--- /dev/null
+++ b/Golden_Repo/z/zarr/zarr-2.13.3-foss-2022a.eb
@@ -0,0 +1,43 @@
+easyblock = "PythonBundle"
+
+name = 'zarr'
+version = '2.13.3'
+
+homepage = 'https://zarr.readthedocs.io/en/stable/'
+description = """Zarr is a Python package providing an implementation of compressed,
+chunked, N-dimensional arrays, designed for use in parallel computing."""
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('SciPy-bundle', '2022.05', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+]
+
+use_pip = True
+sanity_pip_check = True
+
+exts_list = [
+ ('entrypoints', '0.4', {
+ 'checksums': ['b706eddaa9218a19ebcd67b56818f05bb27589b1ca9e8d797b74affad4ccacd4'],
+ }),
+ ('asciitree', '0.3.3', {
+ 'checksums': ['4aa4b9b649f85e3fcb343363d97564aa1fb62e249677f2e18a96765145cc0f6e'],
+ }),
+ ('fasteners', '0.18', {
+ 'checksums': ['cb7c13ef91e0c7e4fe4af38ecaf6b904ec3f5ce0dda06d34924b6b74b869d953'],
+ }),
+ ('monotonic', '1.6', {
+ 'source_tmpl': '%(version)s.tar.gz',
+ 'source_urls': ['https://github.com/atdt/monotonic/archive'],
+ 'checksums': ['9609c249aed584fd714811014870650d08d6f6414402b5a190663c49bf83b221'],
+ }),
+ ('numcodecs', '0.10.2', {
+ 'checksums': ['22838c6b3fd986bd9c724039b88870057f790e22b20e6e1cbbaa0de142dd59c4'],
+ }),
+ (name, version, {
+ 'checksums': ['db24b090616c638f65e33a6bc5d956d642221182961515ccbc28b17fb0d0b48c'],
+ }),
+]
+
+moduleclass = 'data'
diff --git a/Overlays/hdfml_overlay/n/nvidia-driver/nvidia-driver-default.eb b/Overlays/hdfml_overlay/n/nvidia-driver/nvidia-driver-default.eb
new file mode 100644
index 0000000000000000000000000000000000000000..6bce31f65d212b5ff775161523125f6dbf5c1c0e
--- /dev/null
+++ b/Overlays/hdfml_overlay/n/nvidia-driver/nvidia-driver-default.eb
@@ -0,0 +1,27 @@
+name = 'nvidia-driver'
+version = 'default'
+realversion = '515.86.01'
+
+homepage = 'https://developer.nvidia.com/cuda-toolkit'
+description = f"""
+This is a set of libraries normally installed by the NVIDIA driver installer.
+
+The real version of this package is {realversion}.
+"""
+
+site_contacts = 'sc@fz-juelich.de'
+
+toolchain = SYSTEM
+
+source_urls = ['http://us.download.nvidia.com/tesla/%s/' % realversion]
+sources = ['NVIDIA-Linux-x86_64-%s.run' % realversion]
+checksums = ['141777e1ca2f11e97d8d33260213f1be327eb73922ae22f4ddab404bb2ef4664']
+
+# To avoid conflicts between NVML and the kernel driver
+postinstallcmds = ['rm %(installdir)s/lib64/libnvidia-ml.so*']
+
+modluafooter = '''
+add_property("arch","gpu")
+'''
+
+moduleclass = 'system'
diff --git a/Overlays/hdfml_overlay/o/OpenMPI/OpenMPI-4.1.4-GCC-11.3.0.eb b/Overlays/hdfml_overlay/o/OpenMPI/OpenMPI-4.1.4-GCC-11.3.0.eb
index 39982bce8a9aa7774219d2bc26413adb338ab69d..628afaded350470ca24258d66033303e71020ff1 100644
--- a/Overlays/hdfml_overlay/o/OpenMPI/OpenMPI-4.1.4-GCC-11.3.0.eb
+++ b/Overlays/hdfml_overlay/o/OpenMPI/OpenMPI-4.1.4-GCC-11.3.0.eb
@@ -21,8 +21,6 @@ checksums = [
osdependencies = [
# needed for --with-verbs
('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel'),
- # needed for --with-pmix
- ('pmix-devel'),
]
builddependencies = [
diff --git a/Overlays/hdfml_overlay/p/psmpi/psmpi-5.6.0-1-GCC-11.3.0.eb b/Overlays/hdfml_overlay/p/psmpi/psmpi-5.7.0-1-GCC-11.3.0.eb
similarity index 86%
rename from Overlays/hdfml_overlay/p/psmpi/psmpi-5.6.0-1-GCC-11.3.0.eb
rename to Overlays/hdfml_overlay/p/psmpi/psmpi-5.7.0-1-GCC-11.3.0.eb
index 341924da867f56c87339d3f5d9462d537ff7a063..8f16abaa8fb8ef6d4ea0f0966c1b9b90bb3b44b1 100644
--- a/Overlays/hdfml_overlay/p/psmpi/psmpi-5.6.0-1-GCC-11.3.0.eb
+++ b/Overlays/hdfml_overlay/p/psmpi/psmpi-5.7.0-1-GCC-11.3.0.eb
@@ -1,5 +1,5 @@
name = 'psmpi'
-version = '5.6.0-1'
+version = '5.7.0-1'
homepage = 'https://github.com/ParaStation/psmpi2'
description = """ParaStation MPI is an open source high-performance MPI 3.0 implementation,
@@ -12,8 +12,8 @@ toolchain = {'name': 'GCC', 'version': '11.3.0'}
sources = [SOURCE_TAR_GZ]
source_urls = ['https://github.com/ParaStation/psmpi/archive/']
checksums = [
- # psmpi-5.6.0-1.tar.gz
- 'bb532c9cc49da31384bb7d73faccf0be224317bc5b055723095c3965f7ad6209',
+ # psmpi-5.7.0-1.tar.gz
+ '0c1c8556afedfb08cd612f379ddb6327ef1bb0867d6f6fed3d610f3d8c790883',
'978eb3223c978477c40987f745c07fda26ccbad2f468616faf92f0d71b81a156', # psmpi_shebang.patch
]
@@ -34,7 +34,7 @@ patches = [
# We don't have IME in HDFML so we skip this
# mpich_opts = '--enable-static --with-file-system=ime+ufs+gpfs --enable-romio'
#
-# preconfigopts += 'export CFLAGS="-I/opt/ddn/ime/include $CFLAGS" && '
+# preconfigopts = 'export CFLAGS="-I/opt/ddn/ime/include $CFLAGS" && '
# preconfigopts += 'export LDFLAGS="$LDFLAGS -L/opt/ddn/ime/lib -lim_client" && '
mpich_opts = '--enable-static --with-file-system=ufs+gpfs --enable-romio'
diff --git a/Overlays/hdfml_overlay/p/psmpi/psmpi-5.7.0-1-NVHPC-22.11.eb b/Overlays/hdfml_overlay/p/psmpi/psmpi-5.7.0-1-NVHPC-22.11.eb
new file mode 100644
index 0000000000000000000000000000000000000000..125606353501b4c3bb343cae4665845d849d3dfc
--- /dev/null
+++ b/Overlays/hdfml_overlay/p/psmpi/psmpi-5.7.0-1-NVHPC-22.11.eb
@@ -0,0 +1,45 @@
+name = 'psmpi'
+version = '5.7.0-1'
+
+homepage = 'https://github.com/ParaStation/psmpi2'
+description = """ParaStation MPI is an open source high-performance MPI 3.0 implementation,
+based on MPICH v3. It provides extra low level communication libraries and integration with
+various batch systems for tighter process control.
+"""
+
+toolchain = {'name': 'NVHPC', 'version': '22.11'}
+
+sources = [SOURCE_TAR_GZ]
+source_urls = ['https://github.com/ParaStation/psmpi/archive/']
+checksums = [
+ # psmpi-5.7.0-1.tar.gz
+ '0c1c8556afedfb08cd612f379ddb6327ef1bb0867d6f6fed3d610f3d8c790883',
+ '978eb3223c978477c40987f745c07fda26ccbad2f468616faf92f0d71b81a156', # psmpi_shebang.patch
+]
+
+dependencies = [
+ ('pscom', '5.6-default'),
+ # needed due to the inclusion of hwloc
+ ('libxml2', '2.9.13'),
+ # Including CUDA here to trigger the hook to add the gpu property, and because it is actually needed
+ ('CUDA', '11.7', '', SYSTEM)
+]
+
+patches = [
+ 'psmpi_shebang.patch',
+ # We don't have IME in HDFML so we skip this
+ # 'psmpi-5.5.0-1_ime.patch'
+]
+
+# We don't have IME in HDFML so we skip this
+# mpich_opts = '--enable-static --with-file-system=ime+ufs+gpfs --enable-romio'
+#
+# preconfigopts = 'export CFLAGS="-I/opt/ddn/ime/include $CFLAGS" && '
+# preconfigopts += 'export LDFLAGS="$LDFLAGS -L/opt/ddn/ime/lib -lim_client" && '
+mpich_opts = '--enable-static --with-file-system=ufs+gpfs --enable-romio'
+
+threaded = False
+
+cuda = True
+
+moduleclass = 'mpi'
diff --git a/Overlays/hdfml_overlay/p/psmpi/psmpi-5.7.0-1-intel-compilers-2022.1.0.eb b/Overlays/hdfml_overlay/p/psmpi/psmpi-5.7.0-1-intel-compilers-2022.1.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..cf308960ed923a6717e7e7ddbfae4bf0980de7b1
--- /dev/null
+++ b/Overlays/hdfml_overlay/p/psmpi/psmpi-5.7.0-1-intel-compilers-2022.1.0.eb
@@ -0,0 +1,45 @@
+name = 'psmpi'
+version = '5.7.0-1'
+
+homepage = 'https://github.com/ParaStation/psmpi2'
+description = """ParaStation MPI is an open source high-performance MPI 3.0 implementation,
+based on MPICH v3. It provides extra low level communication libraries and integration with
+various batch systems for tighter process control.
+"""
+
+toolchain = {'name': 'intel-compilers', 'version': '2022.1.0'}
+
+sources = [SOURCE_TAR_GZ]
+source_urls = ['https://github.com/ParaStation/psmpi/archive/']
+checksums = [
+ # psmpi-5.7.0-1.tar.gz
+ '0c1c8556afedfb08cd612f379ddb6327ef1bb0867d6f6fed3d610f3d8c790883',
+ '978eb3223c978477c40987f745c07fda26ccbad2f468616faf92f0d71b81a156', # psmpi_shebang.patch
+]
+
+dependencies = [
+ ('pscom', '5.6-default'),
+ # needed due to the inclusion of hwloc
+ ('libxml2', '2.9.13'),
+ # Including CUDA here to trigger the hook to add the gpu property, and because it is actually needed
+ ('CUDA', '11.7', '', SYSTEM)
+]
+
+patches = [
+ 'psmpi_shebang.patch',
+ # We don't have IME in HDFML so we skip this
+ # 'psmpi-5.5.0-1_ime.patch'
+]
+
+# We don't have IME in HDFML so we skip this
+# mpich_opts = '--enable-static --with-file-system=ime+ufs+gpfs --enable-romio'
+#
+# preconfigopts = 'export CFLAGS="-I/opt/ddn/ime/include $CFLAGS" && '
+# preconfigopts += 'export LDFLAGS="$LDFLAGS -L/opt/ddn/ime/lib -lim_client" && '
+mpich_opts = '--enable-static --with-file-system=ufs+gpfs --enable-romio'
+
+threaded = False
+
+cuda = True
+
+moduleclass = 'mpi'
diff --git a/Overlays/juwels_overlay/i/impi-settings/impi-settings-2021-UCX.eb b/Overlays/juwels_overlay/i/impi-settings/impi-settings-2021-UCX.eb
new file mode 100644
index 0000000000000000000000000000000000000000..45793958bf1aefc5aa52e02f5b6b6847dc65c28d
--- /dev/null
+++ b/Overlays/juwels_overlay/i/impi-settings/impi-settings-2021-UCX.eb
@@ -0,0 +1,21 @@
+easyblock = 'SystemBundle'
+
+name = 'impi-settings'
+version = '2021'
+versionsuffix = 'UCX'
+
+homepage = ''
+description = 'This module loads the IntelMPI configuration with UCX.'
+
+toolchain = SYSTEM
+
+source_urls = []
+
+sources = []
+
+modextravars = {
+ 'FI_PROVIDER': 'mlx',
+ 'I_MPI_PMI_VALUE_LENGTH_MAX': '900',
+}
+
+moduleclass = 'system'
diff --git a/Overlays/juwels_overlay/i/impi/impi-2021.6.0-intel-compilers-2022.1.0.eb b/Overlays/juwels_overlay/i/impi/impi-2021.6.0-intel-compilers-2022.1.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..7838c322f5832936b6360722e896e3ad915a6221
--- /dev/null
+++ b/Overlays/juwels_overlay/i/impi/impi-2021.6.0-intel-compilers-2022.1.0.eb
@@ -0,0 +1,16 @@
+name = 'impi'
+version = '2021.6.0'
+
+homepage = 'https://software.intel.com/content/www/us/en/develop/tools/mpi-library.html'
+description = "Intel MPI Library, compatible with MPICH ABI"
+
+toolchain = {'name': 'intel-compilers', 'version': '2022.1.0'}
+
+# see https://software.intel.com/content/www/us/en/develop/articles/oneapi-standalone-components.html
+source_urls = ['https://registrationcenter-download.intel.com/akdlm/irc_nas/18714/']
+sources = ['l_mpi_oneapi_p_%(version)s.602_offline.sh']
+checksums = ['e85db63788c434d43c1378e5e2bf7927a75d11aee8e6b78ee0d933da920977a6']
+
+dependencies = [('UCX', 'default')]
+
+moduleclass = 'mpi'
diff --git a/acls.yml b/acls.yml
index e562d74866cf68f5e6f9e30bb563b52d118e0a60..e3e9e479e72411471ab1e177fbf7f22e2d2ba747 100644
--- a/acls.yml
+++ b/acls.yml
@@ -53,10 +53,10 @@ compilers:
- name: 'NVHPC'
version: '22'
- name: 'intel'
- version: '2021'
+ version: '2022'
mpis:
- name: 'psmpi'
- version: '5.6'
+ version: '5'
- name: 'impi'
version: '2021'
- name: 'OpenMPI'
@@ -132,7 +132,7 @@ software:
owner: 'goebbert1'
base: True
- name: 'ImageMagick'
- owner: 'goebbert1'
+ owner: 'strube1'
base: True
- name: 'ispc'
owner: 'goebbert1'
@@ -209,7 +209,7 @@ software:
owner: 'goebbert1'
base: True
- name: 'libaec'
- owner: 'goebbert1'
+ owner: 'griessbach1'
base: True
- name: 'libdrm'
owner: 'goebbert1'
@@ -226,14 +226,11 @@ software:
- name: 'libvpx'
owner: 'strube1'
base: True
- - name: 'libwebp'
- owner: 'goebbert1'
- base: True
- name: 'libyuv'
owner: 'goebbert1'
base: True
- name: 'LittleCMS'
- owner: 'goebbert1'
+ owner: 'strube1'
base: True
- name: 'lz4'
owner: 'goebbert1'
@@ -450,7 +447,7 @@ software:
base: True
- name: 'Cartopy'
owner: 'strube1'
- base: True
+ mpi: True
- name: 'ccache'
owner: 'strube1'
system: True
@@ -541,6 +538,9 @@ software:
- name: 'giflib'
owner: 'strube1'
base: True
+ - name: 'Ghostscript'
+ owner: 'strube1'
+ base: True
- name: 'git'
owner: 'strube1'
base: True
@@ -553,6 +553,9 @@ software:
- name: 'GLFW'
owner: 'strube1'
base: True
+ - name: 'GLPK'
+ owner: ['strube1', 'knobloch1']
+ base: True
- name: 'GMP'
owner: 'strube1'
base: True
@@ -579,6 +582,9 @@ software:
- name: 'GTK+'
owner: 'strube1'
base: True
+ - name: 'GTK2'
+ owner: 'strube1'
+ base: True
- name: 'Guile'
owner: 'achilles4'
base: True
@@ -588,6 +594,7 @@ software:
- name: 'HTSlib'
owner: 'strube1'
base: True
+ compiler: True
- name: 'Horovod'
owner: 'strube1'
mpi: True
@@ -672,12 +679,16 @@ software:
- name: 'libvips'
owner: 'strube1'
base: True
+ mpi: True
- name: 'libxslt'
owner: 'strube1'
base: True
- name: 'libyaml'
owner: 'strube1'
base: True
+ - name: 'libwebp'
+ owner: 'strube1'
+ base: True
- name: 'Lua'
owner: 'strube1'
base: True
@@ -742,6 +753,7 @@ software:
- name: 'numba'
owner: 'strube1'
base: True
+ mpi: True
- name: 'OpenJPEG'
owner: 'achilles4'
base: True
@@ -772,9 +784,13 @@ software:
- name: 'Pillow-SIMD'
owner: 'strube1'
base: True
+ - name: 'pkgconfig'
+ owner: 'strube1'
+ base: True
- name: 'pocl'
owner: 'strube1'
base: True
+ compiler: True
- name: 'PostgreSQL'
owner: 'strube1'
base: True
@@ -814,6 +830,7 @@ software:
- name: 'pyvips'
owner: 'strube1'
base: True
+ mpi: True
- name: 'PyYAML'
owner: 'strube1'
base: True
@@ -916,7 +933,7 @@ software:
base: True
mpi: True
- name: 'texlive'
- owner: 'achilles4'
+ owner: ['achilles4', 'strube1']
base: True
- name: 'makeinfo'
owner: 'achilles4'
@@ -933,6 +950,7 @@ software:
- name: 'torchvision'
owner: 'strube1'
base: True
+ mpi: True
- name: 'tqdm'
owner: 'strube1'
base: True
@@ -959,7 +977,8 @@ software:
base: 'true'
- name: 'XGBoost'
owner: 'strube1'
- base: 'true'
+ base: True
+ mpi: True
- name: 'Yasm'
owner: 'strube1'
base: 'true'
@@ -972,6 +991,7 @@ software:
- name: 'zarr'
owner: 'strube1'
base: 'true'
+ mpi: True
- name: 'zstd'
owner: 'strube1'
base: 'true'
@@ -1108,14 +1128,14 @@ software:
owner: 'schoebel1'
mpi: True
- name: 'FFTW'
- owner: 'mathprod'
+ owner: ['mathprod', 'strube1']
mpi: True
base: True
- name: 'SLEPc'
owner: 'mathprod'
mpi: True
- name: 'ParMETIS'
- owner: 'mathprod'
+ owner: 'schoebel1'
mpi: True
- name: 'Elemental'
owner: 'mathprod'
@@ -1136,7 +1156,7 @@ software:
owner: 'ridley2'
mpi: True
- name: 'SIONlib'
- owner: ['ridley2', 'feld1']'
+ owner: ['ridley2', 'feld1']
base: True
mpi: True
- name: 'PnetCDF'
@@ -1258,3 +1278,6 @@ software:
- name: 'Meep'
owner: 'koh1'
mpi: True
+ - name: 'UDUNITS'
+ owner: ['griessbach1', 'strube1']
+ base: True
diff --git a/bin/table_generator b/bin/table_generator
index d88e5743e2447ecc1b0fc91a93be7cb73bac6bc8..b2f5c924a760be7dfdb4c372d854dd6df90da2e3 100755
--- a/bin/table_generator
+++ b/bin/table_generator
@@ -65,6 +65,17 @@ ignored_pkgs = [
'Julia.CUDA', # Integrated in Julia
'Julia.MPI', # Integrated in Julia
'yaff', # Depends on an old version of h5py and it is rarely used, so let's drop it
+ # Ignoring in 2023
+ 'motif', # Needed just for Grace
+ 'Grace', # Deprecating as it is almost abandonware
+ 'impi', # Installing just in JWC, so ignoring for everyone else
+ 'iimpi', # Not installing the toolchain anymore, reusing the MPICH stack provided with ParaStationMPI
+ 'intel', # Not installing the toolchain anymore, reusing the MPICH stack provided with ParaStationMPI
+ 'pkg-config', # Replaced by pkgconf
+ 'Mercurial', # Dropped
+ 'Subversion', # Dropped
+ 'Singularity-Tools', # Replaced by Apptainer-Tools
+ 'GtkSourceView', # Just used by meld, which has been dropped, so dropping this too
]
def find_eb_files(path):