diff --git a/Golden_Repo/j/JupyterExtension-jupyterai/JupyterExtension-jupyterai-0.9.0-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterExtension-jupyterai/JupyterExtension-jupyterai-0.9.0-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..a9a307a38ef19a385bf26877d54ddba87620a649
--- /dev/null
+++ b/Golden_Repo/j/JupyterExtension-jupyterai/JupyterExtension-jupyterai-0.9.0-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,130 @@
+easyblock = 'PythonBundle'
+
+name = 'JupyterExtension-jupyterai'
+version = '0.9.0'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://jupyter-ai.readthedocs.io'
+description = """
+A generative AI extension for JupyterLab
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('Rust', '1.60.0'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+ ('protobuf-python', '3.19.4'),
+]
+
+# this is a bundle of Python packages
+exts_defaultclass = 'PythonPackage'
+exts_default_options = {
+ 'source_urls': [PYPI_SOURCE],
+ 'use_pip': True,
+ 'download_dep_fail': True,
+ 'use_pip_for_deps': False,
+ 'sanity_pip_check': True,
+ 'filter': ('python -c "import %(ext_name)s"', ''),
+}
+
+exts_list = [
+ ('faiss_cpu', '1.7.4', {
+ 'modulename': False,
+ 'source_tmpl': '%(name)s-%(version)s-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl',
+ 'checksums': ['dca531952a2e3eac56f479ff22951af4715ee44788a3fe991d208d766d3f95f3'],
+ }),
+ ('webcolors', '1.13', {
+ 'checksums': ['c225b674c83fa923be93d235330ce0300373d02885cef23238813b0d5668304a'],
+ }),
+ ('uri-template', '1.3.0', {
+ 'checksums': ['0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7'],
+ }),
+ ('typing_extensions', '4.5.0', {
+ 'checksums': ['5cb5f4a79139d699607b3ef622a1dedafa84e115ab0024e0d9c044a9479ca7cb'],
+ }),
+ ('numexpr', '2.8.4', {
+ 'checksums': ['d5432537418d18691b9115d615d6daa17ee8275baef3edf1afbbf8bc69806147'],
+ }),
+ ('jsonpointer', '2.4', {
+ 'checksums': ['585cee82b70211fa9e6043b7bb89db6e1aa49524340dde8ad6b63206ea689d88'],
+ }),
+ ('jsonpath-ng', '1.5.3', {
+ 'checksums': ['a273b182a82c1256daab86a313b937059261b5c5f8c4fa3fc38b882b344dd567'],
+ }),
+ ('importlib_metadata', '5.2.0', {
+ 'checksums': ['404d48d62bba0b7a77ff9d405efd91501bef2e67ff4ace0bed40a0cf28c3c7cd'],
+ }),
+ ('grpcio', '1.51.3', {
+ 'modulename': False,
+ 'checksums': ['be7b2265b7527bb12109a7727581e274170766d5b3c9258d4e466f4872522d7a'],
+ }),
+ ('fqdn', '1.5.1', {
+ 'checksums': ['105ed3677e767fb5ca086a0c1f4bb66ebc3c100be518f0e0d755d9eae164d89f'],
+ }),
+ ('typing_inspect', '0.9.0', {
+ 'checksums': ['b23fc42ff6f6ef6954e4852c1fb512cdd18dbea03134f91f856a95ccc9461f78'],
+ }),
+ ('tiktoken', '0.4.0', {
+ 'checksums': ['59b20a819969735b48161ced9b92f05dc4519c17be4015cfb73b65270a243620'],
+ }),
+ ('ray', '2.4.0', {
+ 'source_tmpl': '%(name)s-%(version)s-cp310-cp310-manylinux2014_x86_64.whl',
+ 'checksums': ['5ed5a29795b122e9e2b832d5224ab9b1cc235beab700d2a413b23c63b3d3c80c'],
+ }),
+ ('pydantic', '1.10.10', {
+ 'checksums': ['3b8d5bd97886f9eb59260594207c9f57dce14a6f869c6ceea90188715d29921a'],
+ }),
+ ('marshmallow', '3.19.0', {
+ 'checksums': ['90032c0fd650ce94b6ec6dc8dfeb0e3ff50c144586462c389b81a07205bedb78'],
+ }),
+ ('arrow', '1.2.3', {
+ 'checksums': ['3934b30ca1b9f292376d9db15b19446088d12ec58629bc3f0da28fd55fb633a1'],
+ }),
+ ('openapi-schema-pydantic', '1.2.4', {
+ 'checksums': ['3e22cf58b74a69f752cc7e5f1537f6e44164282db2700cbbcd3bb99ddd065196'],
+ }),
+ ('openai', '0.27.8', {
+ 'checksums': ['2483095c7db1eee274cebac79e315a986c4e55207bb4fa7b82d185b3a2ed9536'],
+ }),
+ ('marshmallow-enum', '1.5.1', {
+ 'checksums': ['38e697e11f45a8e64b4a1e664000897c659b60aa57bfa18d44e226a9920b6e58'],
+ }),
+ ('isoduration', '20.11.0', {
+ 'checksums': ['ac2f9015137935279eac671f94f89eb00584f940f5dc49462a0c4ee692ba1bd9'],
+ }),
+ ('dataclasses-json', '0.5.9', {
+ 'checksums': ['e9ac87b73edc0141aafbce02b44e93553c3123ad574958f0fe52a534b6707e8e'],
+ }),
+ ('langchain', '0.0.159', {
+ 'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
+ 'checksums': ['d9df75405d6f02cc683bef5b3e79fbf9ca3b22c5ff198dd823b5393c568e2ec4'],
+ }),
+ ('jupyter_ai_magics', version, {
+ 'checksums': ['53d403df3015796c330b496c04609fac16590937be6670fe725d9349f0522059'],
+ }),
+ ('jupyter_ai', version, {
+ 'checksums': ['ce3c37ae69c90dd62340ef1dc1df2e1cc35c7420eba2aba8b88e9ce97c3b336d'],
+ }),
+]
+
+modextrapaths = {
+ 'JUPYTER_EXTRA_LABEXTENSIONS_PATH': ['share/jupyter/labextensions'],
+}
+
+sanity_check_paths = {
+ 'files': [],
+ 'dirs': [
+ 'share/jupyter/labextensions',
+ 'lib/python%(pyshortver)s/site-packages'
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterExtension-nglview/JupyterExtension-nglview-3.0.6-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterExtension-nglview/JupyterExtension-nglview-3.0.6-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..aec36fbabae88b65bb198c22b0eb54c8318a5d88
--- /dev/null
+++ b/Golden_Repo/j/JupyterExtension-nglview/JupyterExtension-nglview-3.0.6-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,57 @@
+easyblock = 'PythonBundle'
+
+name = 'JupyterExtension-nglview'
+version = '3.0.6'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'http://nglviewer.org/nglview/'
+description = """
+Jupyter widget to interactively view molecular structures and trajectories
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+]
+
+# this is a bundle of Python packages
+exts_defaultclass = 'PythonPackage'
+exts_default_options = {
+ 'source_urls': [PYPI_SOURCE],
+ 'use_pip': True,
+ 'download_dep_fail': True,
+ 'use_pip_for_deps': False,
+ 'sanity_pip_check': True,
+ 'filter': ('python -c "import %(ext_name)s"', ''),
+}
+
+exts_list = [
+ ('versioneer', '0.28', {
+ 'checksums': ['7175ca8e7bb4dd0e3c9779dd2745e5b4a6036304af3f5e50bd896f10196586d6'],
+ }),
+ ('nglview', '%(version)s', {
+ 'checksums': ['2afd95128118953813634472a7ec5eb596bff4b0d8acf5900045ccc2aa783bbb'],
+ }),
+]
+
+modextrapaths = {
+ 'JUPYTER_EXTRA_LABEXTENSIONS_PATH': ['share/jupyter/labextensions'],
+}
+
+sanity_check_paths = {
+ 'files': [],
+ 'dirs': [
+ 'share/jupyter/labextensions',
+ 'lib/python%(pyshortver)s/site-packages'
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterExtension-nvdashboard/JupyterExtension-nvdashboard-0.8.0-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterExtension-nvdashboard/JupyterExtension-nvdashboard-0.8.0-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..2aa4147749a8cb18f227ec0c33ed44082447790b
--- /dev/null
+++ b/Golden_Repo/j/JupyterExtension-nvdashboard/JupyterExtension-nvdashboard-0.8.0-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,58 @@
+easyblock = 'PythonBundle'
+
+name = 'JupyterExtension-nvdashboard'
+version = '0.8.0'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://github.com/rapidsai/jupyterlab-nvdashboard'
+description = """
+A JupyterLab extension for displaying GPU usage dashboards
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+ # NVIDIA Management Library is on our clusters located at system level
+]
+
+# this is a bundle of Python packages
+exts_defaultclass = 'PythonPackage'
+exts_default_options = {
+ 'source_urls': [PYPI_SOURCE],
+ 'use_pip': True,
+ 'download_dep_fail': True,
+ 'use_pip_for_deps': False,
+ 'sanity_pip_check': True,
+ 'filter': ('python -c "import %(ext_name)s"', ''),
+}
+
+exts_list = [
+ ('pynvml', '11.5.0', {
+ 'checksums': ['d027b21b95b1088b9fc278117f9f61b7c67f8e33a787e9f83f735f0f71ac32d0'],
+ }),
+ ('jupyterlab_nvdashboard', '0.8.0', {
+ 'checksums': ['48e9b535b4139b5d1274844281fd1dd8e244123fb1b2b2ec42442cdbbcd535ab'],
+ }),
+]
+
+modextrapaths = {
+ 'JUPYTER_EXTRA_LABEXTENSIONS_PATH': ['share/jupyter/labextensions'],
+}
+
+sanity_check_paths = {
+ 'files': [],
+ 'dirs': [
+ 'share/jupyter/labextensions',
+ 'lib/python%(pyshortver)s/site-packages'
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterExtension-slurmprovisioner/JupyterExtension-slurmprovisioner-0.6.0-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterExtension-slurmprovisioner/JupyterExtension-slurmprovisioner-0.6.0-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..19be3ea315f5136101454d5cbdc515285ac4e31e
--- /dev/null
+++ b/Golden_Repo/j/JupyterExtension-slurmprovisioner/JupyterExtension-slurmprovisioner-0.6.0-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,63 @@
+easyblock = 'PythonBundle'
+
+name = 'JupyterExtension-slurmprovisioner'
+version = '0.6.0'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://github.com/FZJ-JSC/jupyter-slurm-provisioner-extension'
+description = """
+A JupyterLab extension for using a slurm kernel provisioner
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+]
+
+# this is a bundle of Python packages
+exts_defaultclass = 'PythonPackage'
+exts_default_options = {
+ 'source_urls': [PYPI_SOURCE],
+ 'use_pip': True,
+ 'download_dep_fail': True,
+ 'use_pip_for_deps': False,
+ 'sanity_pip_check': True,
+ 'filter': ('python -c "import %(ext_name)s"', ''),
+}
+
+exts_list = [
+ ('jupyter-slurm-provisioner', '0.6.0', {
+ 'checksums': ['24141dc4abfb009d424837a5d78159c2b63e0243d63618cacebcf4f23edc101f'],
+ }),
+ ('jupyter_slurm_provisioner_extension', '0.3.0', {
+ 'patches': ['jupyter-slurm-provisioner-extension_jserv3.patch'],
+ 'checksums': [
+ 'fa2cf94d180f08ad47563b9bdcc4c66b2f0831dff85e2203a8cb6bc8d90b8a58',
+ '65d2cb1224c4444cf6bfe6b18ff603b75d0263292afc226f5a912e2905a914e1',
+ ],
+ }),
+]
+
+modextrapaths = {
+ 'JUPYTER_EXTRA_LABEXTENSIONS_PATH': ['share/jupyter/labextensions'],
+ 'JUPYTER_PATH': ['share/jupyter'],
+ 'JUPYTER_CONFIG_PATH': ['etc/jupyter'],
+}
+
+sanity_check_paths = {
+ 'files': [],
+ 'dirs': [
+ 'share/jupyter/labextensions',
+ 'lib/python%(pyshortver)s/site-packages'
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterExtension-slurmprovisioner/jupyter-slurm-provisioner-extension_jserv3.patch b/Golden_Repo/j/JupyterExtension-slurmprovisioner/jupyter-slurm-provisioner-extension_jserv3.patch
new file mode 100644
index 0000000000000000000000000000000000000000..6a13402e0195c70b3548efc39a24d19cb54c452d
--- /dev/null
+++ b/Golden_Repo/j/JupyterExtension-slurmprovisioner/jupyter-slurm-provisioner-extension_jserv3.patch
@@ -0,0 +1,12 @@
+diff -Naur jupyter_slurm_provisioner_extension.orig/jupyter_slurm_provisioner_extension-0.3.0/setup.py jupyter_slurm_provisioner_extension/jupyter_slurm_provisioner_extension-0.3.0/setup.py
+--- jupyter_slurm_provisioner_extension.orig/jupyter_slurm_provisioner_extension-0.3.0/setup.py 2022-12-02 16:54:56.000000000 +0100
++++ jupyter_slurm_provisioner_extension/jupyter_slurm_provisioner_extension-0.3.0/setup.py 2023-06-05 21:43:30.684253118 +0200
+@@ -57,7 +57,7 @@
+ long_description_content_type="text/markdown",
+ packages=setuptools.find_packages(),
+ install_requires=[
+- "jupyter_server>=1.6,<2",
++ "jupyter_server>=1.6,<3",
+ "jupyter-slurm-provisioner>=0.1.8"
+ ],
+ extras_require={
diff --git a/Golden_Repo/j/JupyterKernel-Bash/JupyterKernel-Bash-0.9.0-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterKernel-Bash/JupyterKernel-Bash-0.9.0-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..db90d81b2b873d293c5ce9671f0b63d65a2bbb21
--- /dev/null
+++ b/Golden_Repo/j/JupyterKernel-Bash/JupyterKernel-Bash-0.9.0-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,96 @@
+easyblock = 'PythonBundle'
+
+name = 'JupyterKernel-Bash'
+version = '0.9.0'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://github.com/takluyver/bash_kernel'
+description = """
+Native Bash kernel for Jupyter.
+Project Jupyter exists to develop open-source software, open-standards, and services
+for interactive computing across dozens of programming languages.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+]
+
+# this is a bundle of Python packages
+exts_defaultclass = 'PythonPackage'
+exts_default_options = {
+ 'filter': ('python -c "import %(ext_name)s"', ''),
+ 'download_dep_fail': True,
+ 'source_urls': [PYPI_SOURCE],
+ 'use_pip': True,
+ 'sanity_pip_check': True,
+ 'use_pip_for_deps': False,
+}
+
+exts_list = [
+ ('bash_kernel', '0.9.0', {
+ 'checksums': ['0423f0512ef6f83a654e1439a369718899a38f27948fe21b665b2df1dbf3a7c7'],
+ }),
+]
+
+local_jupyter_path = 'share/jupyter'
+
+modextrapaths = {
+ 'JUPYTER_PATH': ['share/jupyter'], # add search path for kernelspecs
+}
+
+# Ensure that the user-specific $HOME/.local/share/jupyter is always first entry in JUPYTHER_PATH
+modluafooter = """
+prepend_path("JUPYTER_PATH", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+"""
+
+postinstallcmds = [
+ # Create virtual environment to ensure we install in the correct directory !!!
+ 'python3 -m venv %(installdir)s --system-site-packages',
+ (
+ '{ cat > %%(builddir)s/env.sh; } << \'EOF\'\n'
+ '#!/bin/bash\n'
+ 'source %%(installdir)s/bin/activate\n'
+ 'export PYTHONPATH=%%(installdir)s/lib/python%%(pyshortver)s/site-packages:${PYTHONPATH}\n'
+ 'export JUPYTER_DATA_DIR=%%(installdir)s/%s\n'
+ 'EOF'
+ ) % (local_jupyter_path),
+
+ # Jupyter Kernel: Bash - https://github.com/takluyver/bash_kernel
+ # installs bash_kernel in $JUPYTER_DATA_DIR/kernels
+ 'source %(builddir)s/env.sh && ${EBROOTPYTHON}/bin/python3 -m bash_kernel.install --user',
+ 'source %(builddir)s/env.sh && chmod -R o+x %(installdir)s/share',
+
+ # Ensure we remove the virtuel environment to avoid wrong search path for python packages
+ 'rm -f %(installdir)s/pyvenv.cfg',
+ 'rm -rf %(installdir)s/bin',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/_distutils_hack',
+ 'rm -f %(installdir)s/lib/python%(pyshortver)s/site-packages/distutils-precedence.pth',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pip',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pip-*',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pkg_resources',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/setuptools',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/setuptools-*',
+]
+
+# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module
+# full_sanity_check = True
+sanity_check_paths = {
+ 'files': [
+ 'share/jupyter/kernels/bash/kernel.json',
+ ],
+ 'dirs': [
+ 'lib/python%(pyshortver)s/site-packages',
+ 'share/jupyter/kernels/bash/',
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterKernel-Cling/JupyterKernel-Cling-20230205-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterKernel-Cling/JupyterKernel-Cling-20230205-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..9980ddaaee1994d28e66590977b523446155d33e
--- /dev/null
+++ b/Golden_Repo/j/JupyterKernel-Cling/JupyterKernel-Cling-20230205-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,95 @@
+easyblock = 'Bundle'
+
+name = 'JupyterKernel-Cling'
+version = '20230205'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://github.com/root-project/cling'
+description = """
+Native C kernel for Jupyter.
+Project Jupyter exists to develop open-source software, open-standards, and services
+for interactive computing across dozens of programming languages.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+ ('Cling', version),
+]
+
+local_jupyter_path = 'share/jupyter'
+
+modextrapaths = {
+ 'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages'],
+ 'JUPYTER_PATH': ['share/jupyter'], # add search path for kernelspecs
+}
+
+# Ensure that the user-specific $HOME/.local/share/jupyter is always first entry in JUPYTHER_PATH
+modluafooter = """
+prepend_path("JUPYTER_PATH", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+"""
+
+postinstallcmds = [
+ # Create virtual environment to ensure we install in the correct directory !!!
+ 'python3 -m venv %(installdir)s --system-site-packages',
+ (
+ '{ cat > %%(builddir)s/env.sh; } << \'EOF\'\n'
+ '#!/bin/bash\n'
+ 'source %%(installdir)s/bin/activate\n'
+ 'export PYTHONPATH=%%(installdir)s/lib/python%%(pyshortver)s/site-packages:${PYTHONPATH}\n'
+ 'export JUPYTER_DATA_DIR=%%(installdir)s/%s\n'
+ 'EOF'
+ ) % (local_jupyter_path),
+
+ # Jupyter Kernel: Cling (C++)
+ (
+ 'source %(builddir)s/env.sh && '
+ ' pip3 install --upgrade --no-deps --force-reinstall ${EBROOTCLING}/share/cling/Jupyter/kernel && '
+ ' jupyter-kernelspec install --prefix=%(installdir)s ${EBROOTCLING}/share/cling/Jupyter/kernel/cling-cpp17 && '
+ ' install -m 0755 ${EBROOTCLING}/share/cling/Jupyter/kernel/scripts/jupyter-cling-kernel %(installdir)s/bin/ '
+ ),
+
+ # correct shebang to correct python binary
+ (
+ 'source %(builddir)s/env.sh && '
+ ' abs2python="#! ${EBROOTPYTHON}/bin/python" && '
+ ' sed "1s@^.*@$abs2python@g" -i %(installdir)s/bin/jupyter-cling-kernel'
+ ),
+ 'source %(builddir)s/env.sh && chmod -R o+x %(installdir)s/share',
+
+ # Ensure we remove the virtuel environment to avoid wrong search path for python packages
+ 'rm -f %(installdir)s/pyvenv.cfg',
+ 'rm -f %(installdir)s/bin/python',
+ 'rm -f %(installdir)s/bin/python3',
+ 'rm -f %(installdir)s/bin/activate',
+ 'rm -f %(installdir)s/bin/activate*',
+ 'rm -f %(installdir)s/bin/easy_install*',
+ 'rm -f %(installdir)s/bin/pip*',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/_distutils_hack',
+ 'rm -f %(installdir)s/lib/python%(pyshortver)s/site-packages/distutils-precedence.pth',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pip',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pip-*',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pkg_resources',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/setuptools',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/setuptools-*',
+]
+
+sanity_check_paths = {
+ 'files': [
+ 'share/jupyter/kernels/cling-cpp17/kernel.json',
+ ],
+ 'dirs': [
+ 'lib/python%(pyshortver)s/site-packages',
+ 'share/jupyter/kernels/cling-cpp17/',
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterKernel-Julia/JupyterKernel-Julia-1.8.5-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterKernel-Julia/JupyterKernel-Julia-1.8.5-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..116e8204b611caa02ca8cbab50dabcaa08cccf17
--- /dev/null
+++ b/Golden_Repo/j/JupyterKernel-Julia/JupyterKernel-Julia-1.8.5-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,129 @@
+easyblock = 'JuliaBundle'
+
+name = 'JupyterKernel-Julia'
+version = '1.8.5'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://github.com/JuliaLang/IJulia.jl'
+description = """
+Native Julia kernel for Jupyter.
+Project Jupyter exists to develop open-source software, open-standards, and services
+for interactive computing across dozens of programming languages.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('Julia', version, '', ('gcccoremkl', '11.3.0-2022.1.0')),
+]
+
+components = [
+ ('julia', '0.6.1', {
+ 'easyblock': 'PythonPackage',
+ 'use_pip': True,
+ 'sources': ['v%(version)s.tar.gz'],
+ 'source_urls': ['https://github.com/JuliaPy/pyjulia/archive/'],
+ 'checksums': [('sha256', 'dffe739075d5a3ab68b8127df3481d5152e87698020966d45fa77efd8671b690')],
+ 'download_dep_fail': True,
+ 'start_dir': 'pyjulia-%(version)s',
+ }),
+]
+
+local_jupyter_path = 'share/jupyter'
+
+exts_defaultclass = 'JuliaPackage'
+exts_list = [
+ ('ZMQ', '1.2.1', {
+ 'source_tmpl': 'v%(version)s.tar.gz',
+ 'source_urls': ['https://github.com/JuliaInterop/ZMQ.jl/archive/'],
+ 'checksums': [('sha256', '8b42555340d0208e5a36cd5e8f29a3f0d44c13c064382d4b1e5d00c1c4a9dd96')],
+ }),
+ ('Interact', '0.10.5', {
+ 'source_tmpl': 'v%(version)s.tar.gz',
+ 'source_urls': ['https://github.com/JuliaGizmos/Interact.jl/archive/'],
+ 'checksums': ['68b347b97fce2f7aeb26e9c03466406f5183fe7d758066bf6111554ca73c3382'],
+ }),
+ ('LanguageServer', '4.4.0', {
+ 'source_tmpl': 'v%(version)s.tar.gz',
+ 'source_urls': ['https://github.com/julia-vscode/LanguageServer.jl/archive/'],
+ 'checksums': ['42fd14603c150311a5c46c27889b89f46663ffaee3e321eccdb6ea908c647a54'],
+ }),
+ ('SymbolServer', '7.2.1', {
+ 'source_tmpl': 'v%(version)s.tar.gz',
+ 'source_urls': ['https://github.com/julia-vscode/SymbolServer.jl/archive/'],
+ 'checksums': ['049a62a61a2a12e837bac208800e102bf36c78672081885e97134c482e645f65'],
+ }),
+ ('IJulia', '1.24.2', {
+ # installs ijulia in JULIA_DEPOT_PATH and kernel in $JUPYTER_DATA_DIR/kernels
+ 'source_tmpl': 'v%(version)s.tar.gz',
+ 'source_urls': ['https://github.com/JuliaLang/IJulia.jl/archive/'],
+ 'checksums': ['de215348c7c41e1ca15c0d21f5f9a78bedce77b02ef89d67f38702c4d57ee80d'],
+ 'preinstallopts': 'export JUPYTER_DATA_DIR=%%(installdir)s/%s' % local_jupyter_path
+ }),
+]
+
+modextrapaths = {
+ 'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages'],
+ 'JUPYTER_PATH': [local_jupyter_path], # add search path for kernelspecs
+}
+
+# Ensure that the user-specific $HOME/.local/share/jupyter is always first entry in JUPYTHER_PATH
+modluafooter = """
+prepend_path("JUPYTER_PATH", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+"""
+
+postinstallcmds = [
+ # Create virtual environment to ensure we install in the correct directory !!!
+ 'python3 -m venv %(installdir)s --system-site-packages',
+ 'mkdir -p %%(installdir)s/%s' % local_jupyter_path,
+ (
+ '{ cat > %%(builddir)s/env.sh; } << \'EOF\'\n'
+ '#!/bin/bash\n'
+ 'source %%(installdir)s/bin/activate\n'
+ 'export PYTHONPATH=%%(installdir)s/lib/python%%(pyshortver)s/site-packages:${PYTHONPATH}\n'
+ ''
+ 'export JULIA_DEPOT_PATH=${EBJULIA_STD_DEPOT_PATH}:${EBJULIA_ADMIN_DEPOT_PATH}\n'
+ 'export JUPYTER_DATA_DIR=%%(installdir)s/%s\n'
+ 'EOF'
+ ) % (local_jupyter_path),
+
+ # configure Python<->Julia bridge (of python package julia)
+ 'source %(builddir)s/env.sh && python -c "import julia; julia.install()"',
+
+ # Ensure we remove the virtuel environment to avoid wrong search path for python packages
+ 'rm -f %(installdir)s/pyvenv.cfg',
+ 'rm -f %(installdir)s/bin/python',
+ 'rm -f %(installdir)s/bin/python3',
+ 'rm -f %(installdir)s/bin/activate',
+ 'rm -f %(installdir)s/bin/activate*',
+ 'rm -f %(installdir)s/bin/easy_install*',
+ 'rm -f %(installdir)s/bin/pip*',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/_distutils_hack',
+ 'rm -f %(installdir)s/lib/python%(pyshortver)s/site-packages/distutils-precedence.pth',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pip',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pip-*',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pkg_resources',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/setuptools',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/setuptools-*',
+]
+
+# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module
+# full_sanity_check = True
+sanity_check_paths = {
+ 'files': [
+ 'share/jupyter/kernels/julia-%(version_major_minor)s/kernel.json',
+ ],
+ 'dirs': [
+ 'lib/python%(pyshortver)s/site-packages',
+ 'share/jupyter/kernels/julia-%(version_major_minor)s/',
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterKernel-Octave/JupyterKernel-Octave-8.2.0-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterKernel-Octave/JupyterKernel-Octave-8.2.0-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..4ed65fd95881364319bbaf565bfa1ea341725822
--- /dev/null
+++ b/Golden_Repo/j/JupyterKernel-Octave/JupyterKernel-Octave-8.2.0-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,140 @@
+easyblock = 'Bundle'
+
+name = 'JupyterKernel-Octave'
+version = '8.2.0'
+local_octavever = version
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://github.com/Calysto/octave_kernel'
+description = """
+Native Octave kernel for Jupyter.
+Project Jupyter exists to develop open-source software, open-standards, and services
+for interactive computing across dozens of programming languages.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('Octave', local_octavever, '', ('gcccoremkl', '11.3.0-2022.1.0')), # ensure it is available
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+]
+
+local_jupyter_path = 'share/jupyter'
+local_kernel_dir = 'octave'
+local_kernel_name = 'Octave-%s' % local_octavever
+
+modextrapaths = {
+ 'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages'],
+ 'JUPYTER_PATH': ['share/jupyter'], # add search path for kernelspecs
+}
+
+# Ensure that the user-specific $HOME/.local/share/jupyter is always first entry in JUPYTHER_PATH
+modluafooter = """
+prepend_path("JUPYTER_PATH", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+"""
+
+postinstallcmds = [
+ # Create virtual environment to ensure we install in the correct directory !!!
+ 'python3 -m venv %(installdir)s --system-site-packages',
+ (
+ '{ cat > %%(builddir)s/env.sh; } << \'EOF\'\n'
+ '#!/bin/bash\n'
+ 'source %%(installdir)s/bin/activate\n'
+ 'export PYTHONPATH=%%(installdir)s/lib/python%%(pyshortver)s/site-packages:${PYTHONPATH}\n'
+ 'export JUPYTER_DATA_DIR=%%(installdir)s/%s\n'
+ 'EOF'
+ ) % (local_jupyter_path),
+
+ # enable use of Octave from production stage
+ # '--no-deps' only because we know its installed in module Jupyter
+ 'source %(builddir)s/env.sh && pip3 install --upgrade --no-deps --force-reinstall ipykernel ',
+ 'rm -rf %(installdir)s/share/jupyter/kernels/', # remove any kernel installed by ipykernel
+ # 'source %(builddir)s/env.sh && pip3 install --upgrade --no-deps --force-reinstall ipyparallel ',
+
+ # install Python package octave_kernel
+ # we rely on pip for automatic installation of dependencies!
+ 'source %(builddir)s/env.sh && pip3 install --upgrade --no-deps --force-reinstall metakernel==0.29.0 ',
+ 'source %(builddir)s/env.sh && pip3 install --upgrade --no-deps --force-reinstall octave_kernel==0.34.2 ',
+
+ # write kernel.sh
+ (
+ '{ cat >> %%(builddir)s/env.sh; } << \'EOF\'\n'
+ 'export KERNEL_DIR=%s\n'
+ 'export KERNEL_NAME=%s\n'
+ 'EOF'
+ ) % (local_kernel_dir, local_kernel_name),
+ (
+ '{ source %%(builddir)s/env.sh && '
+ ' cat > %%(installdir)s/share/jupyter/kernels/%s/kernel.sh; } << EOF\n'
+ '#!/bin/bash \n'
+ '\n'
+ '# Load required modules \n'
+ 'module purge \n'
+ 'module load Stages/${STAGE} \n'
+ 'module load GCCcore/.11.3.0 \n'
+ '\n'
+ 'module load Python/%%(pyver)s \n'
+ 'module load JupyterLab/%s \n'
+ 'module load Octave/%s \n'
+ '\n'
+ 'export PYTHONPATH=%%(installdir)s/lib/python%%(pyshortver)s/site-packages:\${PYTHONPATH} \n'
+ '\n'
+ 'exec python \$@\n'
+ 'EOF'
+ ) % (local_kernel_dir, local_jupyterver, local_octavever),
+ 'source %(builddir)s/env.sh && chmod +x %(installdir)s/share/jupyter/kernels/${KERNEL_DIR}/kernel.sh',
+
+ # write kernel.json
+ (
+ '{ source %%(builddir)s/env.sh && '
+ ' cat > %%(installdir)s/share/jupyter/kernels/%s/kernel.json; } << \'EOF\'\n'
+ '{ \n'
+ ' "argv": [ \n'
+ ' "%%(installdir)s/share/jupyter/kernels/%s/kernel.sh", \n'
+ ' "-m", \n'
+ ' "octave_kernel", \n'
+ ' "-f", \n'
+ ' "{connection_file}" \n'
+ ' ], \n'
+ ' "display_name": "%s", \n'
+ ' "mimetype": "text/x-octave", \n'
+ ' "language": "python", \n'
+ ' "name": "%s" \n'
+ '}\n'
+ 'EOF'
+ ) % (local_kernel_dir, local_kernel_dir, local_kernel_name, local_kernel_name),
+
+ # ensure correct permissions
+ 'source %(builddir)s/env.sh && chmod -R o+x %(installdir)s/share',
+
+ # Ensure we remove the virtuel environment to avoid wrong search path for python packages
+ 'rm -f %(installdir)s/pyvenv.cfg',
+ 'rm -rf %(installdir)s/bin',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/_distutils_hack',
+ 'rm -f %(installdir)s/lib/python%(pyshortver)s/site-packages/distutils-precedence.pth',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pip',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pip-*',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pkg_resources',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/setuptools',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/setuptools-*',
+]
+
+sanity_check_paths = {
+ 'files': [
+ 'share/jupyter/kernels/%s/kernel.sh' % local_kernel_dir,
+ 'share/jupyter/kernels/%s/kernel.json' % local_kernel_dir,
+ ],
+ 'dirs': [
+ 'lib/python%(pyshortver)s/site-packages',
+ 'share/jupyter/kernels/octave/',
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterKernel-PyDeepLearning/JupyterKernel-PyDeepLearning-2023.5-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterKernel-PyDeepLearning/JupyterKernel-PyDeepLearning-2023.5-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..26c0a8b43fdc7148ba98fc92a800ba8a1c97f20a
--- /dev/null
+++ b/Golden_Repo/j/JupyterKernel-PyDeepLearning/JupyterKernel-PyDeepLearning-2023.5-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,161 @@
+easyblock = 'PythonBundle'
+
+name = 'JupyterKernel-PyDeepLearning'
+version = '2023.5'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://www.fz-juelich.de'
+description = """
+Special DeepLearning kernel for Jupyter.
+Project Jupyter exists to develop open-source software, open-standards, and services
+for interactive computing across dozens of programming languages.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+ # just ensure they exist
+ ('CUDA', '11.7', '', SYSTEM),
+ ('OpenCV', '4.7.0', '-CUDA-%(cudaver)s-contrib', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('TensorFlow', '2.11.0', '-CUDA-%(cudaver)s', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('protobuf-python', '3.19.4'),
+ # ('PyTorch', '1.12', '-CUDA-%(cudaver)s', ''),
+ # ('PyTorch-Geometric', '2.1.0', ''),
+ # ('torchvision', '0.13.1', '-CUDA-11.7'),
+ # ('torchaudio', '0.12.1'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+]
+
+
+components = [
+ ('logos', '1.0', {
+ 'easyblock': 'Binary',
+ 'sources': [
+ {'filename': 'logo-32x32.png.base64', 'extract_cmd': "base64 -d %s > %%(builddir)s/logo-32x32.png"},
+ {'filename': 'logo-64x64.png.base64', 'extract_cmd': "base64 -d %s > %%(builddir)s/logo-64x64.png"},
+ {'filename': 'logo-128x128.png.base64', 'extract_cmd': "base64 -d %s > %%(builddir)s/logo-128x128.png"},
+ ],
+ 'checksums': [
+ '08651dd90fd0ce20a8f3d62bdbeacf34dfae7a73e61fde912d080222aa00e6b7',
+ 'c3230068b407ff172b369208c20a24ed04971ce38e2fdf9116100102e14221a8',
+ 'baa78f71dd2bb4e51eab0c653535365e54a717506622bcff4f834d653a17a2bf',
+ ],
+ }),
+]
+
+exts_default_options = {
+ 'source_urls': [PYPI_SOURCE],
+ 'use_pip': True,
+ 'sanity_pip_check': False, # skip as it requires protobuf, TensorFlow
+ 'download_dep_fail': True,
+ 'use_pip_for_deps': False,
+}
+
+exts_list = [
+ ('lmdb', '1.1.1', {
+ 'checksums': ['165cd1669b29b16c2d5cc8902b90fede15a7ee475c54d466f1444877a3f511ac'],
+ }),
+ ('gviz_api', '1.9.0', {
+ 'checksums': ['43d13ccc21834d0501b33a291ef3265e933dbb4bbdca3d34b1ed0a048c0ef640'],
+ }),
+ ('tensorboard_plugin_profile', '2.5.0', {
+ 'checksums': ['f832698d87a773b9a017fc4dd5cf598a1ff942ccfbf3392c83fe12c949ab9f52'],
+ }),
+ ('tensorflow_hub', '0.12.0', {
+ 'source_tmpl': 'tensorflow_hub-0.12.0-py2.py3-none-any.whl',
+ 'checksums': ['822fe5f7338c95efcc3a534011c6689e4309ba2459def87194179c4de8a6e1fc'],
+ 'unpack_sources': False,
+ 'modulename': False, # skip sanity check as 'import' will fail without TensorFlow
+ }),
+]
+
+local_kernel_dir = 'pydeeplearning'
+local_kernel_name = 'PyDeepLearning-%s' % version
+
+modextrapaths = {
+ 'JUPYTER_PATH': ['share/jupyter'], # add search path for kernelspecs
+ 'HOROVOD_MPI_THREADS_DISABLE': ['1'], # no mpi by default
+}
+
+# Ensure that the user-specific $HOME/.local/share/jupyter is first entry in JUPYTHER_PATH
+modluafooter = """
+prepend_path("JUPYTER_PATH", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+"""
+
+postinstallcmds = [
+ # create kernel skeleton
+ (
+ 'python -m ipykernel install --name=%s --prefix=%%(installdir)s && '
+ 'rm -f %%(installdir)s/share/jupyter/kernels/%s/logo-svg.svg && '
+ 'mv %%(installdir)s/logo-32x32.png %%(installdir)s/share/jupyter/kernels/%s/logo-32x32.png && '
+ 'mv %%(installdir)s/logo-64x64.png %%(installdir)s/share/jupyter/kernels/%s/logo-64x64.png && '
+ 'mv %%(installdir)s/logo-128x128.png %%(installdir)s/share/jupyter/kernels/%s/logo-128x128.png'
+ ) % (local_kernel_dir, local_kernel_dir, local_kernel_dir, local_kernel_dir, local_kernel_dir),
+
+ # write kernel.sh
+ (
+ '{ cat > %%(installdir)s/share/jupyter/kernels/%s/kernel.sh; } << EOF\n'
+ '#!/bin/bash \n'
+ '\n'
+ '# Load required modules \n'
+ 'module purge \n'
+ 'module load Stages/${STAGE} \n'
+ 'module load GCC \n'
+ 'module load OpenMPI \n'
+ 'module load %s/.%s%s \n'
+ '\n'
+ 'module load OpenCV/4.7.0-CUDA-11.7-contrib \n'
+ 'module load TensorFlow/2.11.0-CUDA-11.7 \n'
+ 'module load protobuf-python/.3.19.4 \n'
+ 'module load PyTorch/1.12.0-CUDA-11.7 \n'
+ 'module load PyTorch-Geometric/2.1.0-PyTorch-1.12.0-CUDA-11.7 \n'
+ 'module load torchvision/0.13.1-CUDA-11.7 \n'
+ 'module load torchaudio/0.12.1 \n'
+ '\n'
+ 'export PYTHONPATH=%%(installdir)s/lib/python%%(pyshortver)s/site-packages:\$PYTHONPATH \n'
+ 'exec python -m ipykernel \$@\n'
+ '\n'
+ 'EOF'
+ ) % (local_kernel_dir, name, version, versionsuffix),
+ 'chmod +x %%(installdir)s/share/jupyter/kernels/%s/kernel.sh' % local_kernel_dir,
+
+ # write kernel.json
+ (
+ '{ cat > %%(installdir)s/share/jupyter/kernels/%s/kernel.json; } << \'EOF\'\n'
+ '{ \n'
+ ' "argv": [ \n'
+ ' "%%(installdir)s/share/jupyter/kernels/%s/kernel.sh", \n'
+ ' "-m", \n'
+ ' "ipykernel_launcher", \n'
+ ' "-f", \n'
+ ' "{connection_file}" \n'
+ ' ], \n'
+ ' "display_name": "%s", \n'
+ ' "language": "python", \n'
+ ' "name": "%s", \n'
+ ' "metadata": { \n'
+ ' "debugger": true \n'
+ ' } \n'
+ '}\n'
+ 'EOF'
+ ) % (local_kernel_dir, local_kernel_dir, local_kernel_name, local_kernel_name),
+]
+
+sanity_check_paths = {
+ 'files': [
+ 'share/jupyter/kernels/%s/kernel.sh' % local_kernel_dir,
+ 'share/jupyter/kernels/%s/kernel.json' % local_kernel_dir,
+ ],
+ 'dirs': [
+ 'share/jupyter/kernels/',
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterKernel-PyEarthSystem/JupyterKernel-PyEarthSystem-2023.5-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterKernel-PyEarthSystem/JupyterKernel-PyEarthSystem-2023.5-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..d72ef7b83a06a4335dd03bc99580a0658965ed3e
--- /dev/null
+++ b/Golden_Repo/j/JupyterKernel-PyEarthSystem/JupyterKernel-PyEarthSystem-2023.5-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,174 @@
+easyblock = 'PythonBundle'
+
+name = 'JupyterKernel-PyEarthSystem'
+version = '2023.5'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://www.fz-juelich.de'
+description = """
+Special Earth System Modeling kernel for Jupyter.
+Project Jupyter exists to develop open-source software, open-standards, and services
+for interactive computing across dozens of programming languages.
+"""
+
+# toolchain = {'name': 'gcccoremkl', 'version': '11.3.0-2022.1.0'}
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+ # just ensure they exist (if they can be loaded here)
+ # ('NVHPC', '23.1'),
+ ('netcdf4-python', '1.6.1', '-serial'),
+ ('SciPy-bundle', '2022.05', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('xarray', '2022.9.0', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('dask', '2022.12.0', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('TensorFlow', '2.11.0', '-CUDA-11.7', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('Cartopy', '0.21.0'),
+ ('Ninja', '1.10.2'),
+ ('git', '2.36.0', '-nodocs'),
+ ('GSL', '2.7'),
+ ('gnuplot', '5.4.4'),
+ ('ncview', '2.1.8'),
+ ('GPicView', '0.2.5'),
+ ('ImageMagick', '7.1.0-37'),
+ ('GDAL', '3.5.0'),
+ ('numba', '0.56.4', '-CUDA-11.7', ('gcccoremkl', '11.3.0-2022.1.0')),
+ # ('ParaStationMPI', '5.7.0-1'),
+ # ('NCO', '5.1.4'),
+ # req. GCC-toolchain not NVHPC-toolchain),
+ # ('CDO', '2.1.1'),
+ # ('mpi4py', '3.1.4'),
+ # ('PyTorch', '1.12.0', '-CUDA-11.7'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+]
+
+components = [
+ ('logos', '1.0', {
+ 'easyblock': 'Binary',
+ 'sources': [
+ {'filename': 'logo-32x32.png.base64', 'extract_cmd': "base64 -d %s > %%(builddir)s/logo-32x32.png"},
+ {'filename': 'logo-64x64.png.base64', 'extract_cmd': "base64 -d %s > %%(builddir)s/logo-64x64.png"},
+ {'filename': 'logo-128x128.png.base64', 'extract_cmd': "base64 -d %s > %%(builddir)s/logo-128x128.png"},
+ ],
+ 'checksums': [
+ 'f5dc53fd44adf3317014b9b34d40947fbe0f41206a77881c73c30e31a5b14852',
+ '465720735e479f2161bf64c91eaa7673b63d7e67934c6de27843e1eddad2ac8b',
+ '7de45ccf75e9fa58fe98585bfc0d094f2dd91087632db764fea807e410b3b201',
+ ],
+ }),
+]
+
+exts_default_options = {
+ 'source_urls': [PYPI_SOURCE],
+ 'use_pip': True,
+ 'sanity_pip_check': False, # skip as it requires protobuf, TensorFlow
+ 'download_dep_fail': True,
+ 'use_pip_for_deps': False,
+}
+
+exts_list = [
+]
+
+local_kernel_dir = 'pyearthsystem'
+local_kernel_name = 'PyEarthSystem-%s' % version
+
+modextrapaths = {
+ 'JUPYTER_PATH': ['share/jupyter'], # add search path for kernelspecs
+ 'HOROVOD_MPI_THREADS_DISABLE': ['1'], # no mpi by default
+}
+
+# Ensure that the user-specific $HOME/.local/share/jupyter is first entry in JUPYTHER_PATH
+modluafooter = """
+prepend_path("JUPYTER_PATH", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+"""
+
+postinstallcmds = [
+ # create kernel skeleton
+ (
+ 'python -m ipykernel install --name=%s --prefix=%%(installdir)s && '
+ 'rm -f %%(installdir)s/share/jupyter/kernels/%s/logo-svg.svg && '
+ 'mv %%(installdir)s/logo-32x32.png %%(installdir)s/share/jupyter/kernels/%s/logo-32x32.png && '
+ 'mv %%(installdir)s/logo-64x64.png %%(installdir)s/share/jupyter/kernels/%s/logo-64x64.png && '
+ 'mv %%(installdir)s/logo-128x128.png %%(installdir)s/share/jupyter/kernels/%s/logo-128x128.png'
+ ) % (local_kernel_dir, local_kernel_dir, local_kernel_dir, local_kernel_dir, local_kernel_dir),
+
+ # write kernel.sh
+ (
+ '{ cat > %%(installdir)s/share/jupyter/kernels/%s/kernel.sh; } << EOF\n'
+ '#!/bin/bash \n'
+ '\n'
+ '# Load required modules \n'
+ 'module load Stages/${STAGE} \n'
+ 'module load NVHPC/23.1 \n'
+ 'module load %s/.%s%s \n'
+ '\n'
+ 'module load netcdf4-python/1.6.1-serial \n'
+ 'module load SciPy-bundle/2022.05 \n'
+ 'module load xarray/2022.9.0 \n'
+ 'module load dask/2022.12.0 \n'
+ 'module load TensorFlow/2.11.0-CUDA-11.7 \n'
+ 'module load Cartopy/0.21.0 \n'
+ 'module load Ninja/1.10.2 \n'
+ 'module load git/2.36.0-nodocs \n'
+ 'module load GSL/2.7 \n'
+ 'module load gnuplot/5.4.4 \n'
+ 'module load ncview/2.1.8 \n'
+ 'module load GPicView/0.2.5 \n'
+ 'module load ImageMagick/7.1.0-37 \n'
+ 'module load GDAL/3.5.0 \n'
+ 'module load numba/0.56.4-CUDA-11.7 \n'
+ '\n'
+ 'module load ParaStationMPI/5.7.0-1 \n'
+ 'module load NCO/5.1.4 \n'
+ '\n'
+ '# req. GCC-toolchain not NVHPC-toolchain \n'
+ '# module load CDO/2.1.1 \n'
+ '# module load mpi4py/3.1.4 \n'
+ '# module load PyTorch/1.12.0-CUDA-11.7 \n'
+ '\n'
+ 'export PYTHONPATH=%%(installdir)s/lib/python%%(pyshortver)s/site-packages:\$PYTHONPATH \n'
+ 'exec python -m ipykernel \$@\n'
+ '\n'
+ 'EOF'
+ ) % (local_kernel_dir, name, version, versionsuffix),
+ 'chmod +x %%(installdir)s/share/jupyter/kernels/%s/kernel.sh' % local_kernel_dir,
+
+ # write kernel.json
+ (
+ '{ cat > %%(installdir)s/share/jupyter/kernels/%s/kernel.json; } << \'EOF\'\n'
+ '{ \n'
+ ' "argv": [ \n'
+ ' "%%(installdir)s/share/jupyter/kernels/%s/kernel.sh", \n'
+ ' "-m", \n'
+ ' "ipykernel_launcher", \n'
+ ' "-f", \n'
+ ' "{connection_file}" \n'
+ ' ], \n'
+ ' "display_name": "%s", \n'
+ ' "language": "python", \n'
+ ' "name": "%s", \n'
+ ' "metadata": { \n'
+ ' "debugger": true \n'
+ ' } \n'
+ '}\n'
+ 'EOF'
+ ) % (local_kernel_dir, local_kernel_dir, local_kernel_name, local_kernel_name),
+]
+
+sanity_check_paths = {
+ 'files': [
+ 'share/jupyter/kernels/%s/kernel.sh' % local_kernel_dir,
+ 'share/jupyter/kernels/%s/kernel.json' % local_kernel_dir,
+ ],
+ 'dirs': [
+ 'share/jupyter/kernels/',
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterKernel-PyEarthSystem/logo-128x128.png.base64 b/Golden_Repo/j/JupyterKernel-PyEarthSystem/logo-128x128.png.base64
new file mode 100644
index 0000000000000000000000000000000000000000..c501076be2b42c15267241b3d6b250dca8c9e469
--- /dev/null
+++ b/Golden_Repo/j/JupyterKernel-PyEarthSystem/logo-128x128.png.base64
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diff --git a/Golden_Repo/j/JupyterKernel-PyQuantum/JupyterKernel-PyQuantum-2023.5-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterKernel-PyQuantum/JupyterKernel-PyQuantum-2023.5-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..617a25379d850101a53994704226fa1af08dd647
--- /dev/null
+++ b/Golden_Repo/j/JupyterKernel-PyQuantum/JupyterKernel-PyQuantum-2023.5-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,156 @@
+easyblock = 'PythonBundle'
+
+name = 'JupyterKernel-PyQuantum'
+
+# Versioning scheme:
+# major_version: software stage of modules loaded by the kernel
+# minor version: release month
+local_kernel_stage = 2023
+version = f'{local_kernel_stage}.5'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://www.fz-juelich.de'
+description = """
+Kernel for quantum computing in Jupyter.
+Project Jupyter exists to develop open-source software, open-standards, and services for interactive computing across
+dozens of programming languages.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+# Not relevant to check any of these since we will load versions from another stage
+builddependencies = [
+ ('binutils', '2.38'),
+ # ('Cartopy', '0.21.0'),
+ # ('Cirq', '1.0.0'),
+ # ('DWave', '6.3.0', '', ('gcccoremkl', '11.3.0-2022.4.0')),
+ # ('PyQuil', '3.3.3'),
+ # ('Qiskit', '0.41.0', '', ('gpsmkl', '2022')),
+ # ('Qiskit-juqcs', '0.5.0', '', ('gpsmkl', '2022')),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+]
+
+components = [
+ ('logos', '1.0', {
+ 'easyblock': 'Binary',
+ 'sources': [
+ {'filename': 'logo-32x32.png.base64',
+ 'extract_cmd': "base64 -d %s > %%(builddir)s/logo-32x32.png"},
+ {'filename': 'logo-64x64.png.base64',
+ 'extract_cmd': "base64 -d %s > %%(builddir)s/logo-64x64.png"},
+ {'filename': 'logo-128x128.png.base64',
+ 'extract_cmd': "base64 -d %s > %%(builddir)s/logo-128x128.png"},
+ ],
+ 'checksums': [
+ 'd252acdbbd8838aff9ff183ce249b5a4c2ef43a6309680f2a4cb13029813e3e9',
+ 'b7c900cab9761d24acb1ff98e42cc61c5a14d7c71ee2c91aa4de35508a927dc9',
+ 'c2ed9885240b3fbeabf7f8eeef14152f80cf55dc13d8de26f4d8a7a046a8e015',
+ ],
+
+ }),
+]
+
+exts_default_options = {
+ 'source_urls': [PYPI_SOURCE],
+ 'use_pip': True,
+ 'sanity_pip_check': True,
+ 'download_dep_fail': True,
+ 'use_pip_for_deps': False,
+}
+
+# additional Python packages
+exts_list = [
+]
+
+local_kernel_name = 'PyQuantum-%s' % version
+# ipykernel will lowercase the kernel name
+local_kernel_dir = local_kernel_name.lower()
+
+modextrapaths = {
+ 'JUPYTER_PATH': ['share/jupyter'], # add search path for kernelspecs
+}
+
+# Ensure that the user-specific $HOME/.local/share/jupyter is first entry in JUPYTHER_PATH
+modluafooter = """
+prepend_path("JUPYTER_PATH", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+"""
+
+
+postinstallcmds = [
+ # create kernel skeleton
+ (
+ 'python -m ipykernel install --name=%s --prefix=%%(installdir)s && '
+ 'rm -f %%(installdir)s/share/jupyter/kernels/%s/logo-svg.svg && '
+ 'mv %%(installdir)s/logo-32x32.png %%(installdir)s/share/jupyter/kernels/%s/logo-32x32.png && '
+ 'mv %%(installdir)s/logo-64x64.png %%(installdir)s/share/jupyter/kernels/%s/logo-64x64.png && '
+ 'mv %%(installdir)s/logo-128x128.png %%(installdir)s/share/jupyter/kernels/%s/logo-128x128.png'
+ ) % (local_kernel_dir, local_kernel_dir, local_kernel_dir, local_kernel_dir, local_kernel_dir),
+
+ # write kernel.sh
+ (
+ '{ cat > %%(installdir)s/share/jupyter/kernels/%s/kernel.sh; } << EOF \n'
+ '#!/bin/bash \n'
+ '\n'
+ '# Load required modules \n'
+ 'module purge \n'
+ f'module load Stages/{local_kernel_stage} \n'
+ 'module load GCC/11.3.0 \n'
+ 'module load ParaStationMPI \n'
+ 'module load Cartopy/0.21.0 \n'
+ 'module load Cirq/1.0.0 \n'
+ 'module load DWave/6.3.0 \n'
+ 'module load PyQuil/3.3.3 \n'
+ 'module load Qiskit/0.41.0 \n'
+ # 'module load Qiskit-juqcs/0.5.0 \n' # not yet compatible with current Qiskit
+ 'module load pulser/0.12.0 \n'
+ 'module load myqlm/1.7.3 \n'
+ 'module load %s/.%s%s \n'
+ '\n'
+ 'export PYTHONPATH=%%(installdir)s/lib/python%%(pyshortver)s/site-packages:\$PYTHONPATH \n'
+ 'exec python -m ipykernel \$@\n'
+ '\n'
+ 'EOF'
+ ) % (local_kernel_dir, name, version, versionsuffix),
+ 'chmod +x %%(installdir)s/share/jupyter/kernels/%s/kernel.sh' % local_kernel_dir,
+
+ # write kernel.json
+ (
+ '{ cat > %%(installdir)s/share/jupyter/kernels/%s/kernel.json; } << \'EOF\'\n'
+ '{ \n'
+ ' "argv": [ \n'
+ ' "%%(installdir)s/share/jupyter/kernels/%s/kernel.sh", \n'
+ ' "-m", \n'
+ ' "ipykernel_launcher", \n'
+ ' "-f", \n'
+ ' "{connection_file}" \n'
+ ' ], \n'
+ ' "display_name": "%s", \n'
+ ' "language": "python", \n'
+ ' "name": "%s", \n'
+ ' "metadata": { \n'
+ ' "debugger": true \n'
+ ' } \n'
+ '}\n'
+ 'EOF'
+ ) % (local_kernel_dir, local_kernel_dir, local_kernel_name, local_kernel_name),
+]
+
+# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module
+# full_sanity_check = True
+sanity_check_paths = {
+ 'files': [
+ 'share/jupyter/kernels/%s/kernel.sh' % local_kernel_dir,
+ 'share/jupyter/kernels/%s/kernel.json' % local_kernel_dir,
+ ],
+ 'dirs': [
+ 'share/jupyter/kernels/',
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterKernel-PyQuantum/logo-128x128.png.base64 b/Golden_Repo/j/JupyterKernel-PyQuantum/logo-128x128.png.base64
new file mode 100644
index 0000000000000000000000000000000000000000..4a8f9967247763e6e53e234ef9c9d37638c72cab
--- /dev/null
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diff --git a/Golden_Repo/j/JupyterKernel-PyVisualization/JupyterKernel-PyVisualization-2023.5-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterKernel-PyVisualization/JupyterKernel-PyVisualization-2023.5-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..cc9d7dae2b50a0efb70be35c6e0b3b5a9518407a
--- /dev/null
+++ b/Golden_Repo/j/JupyterKernel-PyVisualization/JupyterKernel-PyVisualization-2023.5-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,131 @@
+easyblock = 'PythonBundle'
+
+name = 'JupyterKernel-PyVisualization'
+version = '2023.5'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://www.fz-juelich.de'
+description = """
+Special Jupyter kernel including visualization tools.
+Project Jupyter exists to develop open-source software, open-standards, and services
+for interactive computing across dozens of programming languages.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+ # check for existance
+ # ('ParaView', '5.11.0', '-EGL', ('gpsmkl', '2022a')),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+]
+
+components = [
+ ('logos', '1.0', {
+ 'easyblock': 'Binary',
+ 'sources': [
+ {'filename': 'logo-32x32.png.base64', 'extract_cmd': "base64 -d %s > %%(builddir)s/logo-32x32.png"},
+ {'filename': 'logo-64x64.png.base64', 'extract_cmd': "base64 -d %s > %%(builddir)s/logo-64x64.png"},
+ {'filename': 'logo-128x128.png.base64', 'extract_cmd': "base64 -d %s > %%(builddir)s/logo-128x128.png"},
+ ],
+ 'checksums': [
+ ('sha256', '84323b573eabc75b9fae94109186e2978939d09bcc5df3e851a27b9888a2d844'),
+ ('sha256', 'b4e80ac4ad7f3bc319ccde862518c148727474afdb3afd098bd4fcaebb7d7bf3'),
+ ('sha256', '567e6571a1770da70df1bb0a9dbe28b3b83fee2975490a65a09731516b27d8c7'),
+ ],
+ }),
+]
+
+exts_default_options = {
+ 'source_urls': [PYPI_SOURCE],
+ 'use_pip': True,
+ 'sanity_pip_check': True,
+ 'download_dep_fail': True,
+ 'use_pip_for_deps': False,
+}
+
+exts_list = [
+]
+
+local_kernel_dir = 'pyvisualization'
+local_kernel_name = 'PyVisualization-%s' % version
+
+modextrapaths = {
+ 'JUPYTER_PATH': ['share/jupyter'], # add search path for kernelspecs
+}
+
+# Ensure that the user-specific $HOME/.local/share/jupyter is first entry in JUPYTHER_PATH
+modluafooter = """
+prepend_path("JUPYTER_PATH", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+"""
+
+postinstallcmds = [
+ # create kernel skeleton
+ (
+ 'python -m ipykernel install --name=%s --prefix=%%(installdir)s && '
+ 'rm -f %%(installdir)s/share/jupyter/kernels/%s/logo-svg.svg && '
+ 'mv %%(installdir)s/logo-32x32.png %%(installdir)s/share/jupyter/kernels/%s/logo-32x32.png && '
+ 'mv %%(installdir)s/logo-64x64.png %%(installdir)s/share/jupyter/kernels/%s/logo-64x64.png && '
+ 'mv %%(installdir)s/logo-128x128.png %%(installdir)s/share/jupyter/kernels/%s/logo-128x128.png'
+ ) % (local_kernel_dir, local_kernel_dir, local_kernel_dir, local_kernel_dir, local_kernel_dir),
+
+ # write kernel.sh
+ (
+ '{ cat > %%(installdir)s/share/jupyter/kernels/%s/kernel.sh; } << EOF\n'
+ '#!/bin/bash \n'
+ '\n'
+ '# Load required modules \n'
+ 'module purge \n'
+ 'module load Stages/${STAGE} \n'
+ 'module load GCC/11.3.0 \n'
+ 'module load ParaStationMPI \n'
+ 'module load %s/.%s%s \n'
+ '\n'
+ 'module load ParaView/5.11.0-EGL \n'
+ '\n'
+ 'export PYTHONPATH=%%(installdir)s/lib/python%%(pyshortver)s/site-packages:\$PYTHONPATH \n'
+ 'exec python -m ipykernel \$@\n'
+ '\n'
+ 'EOF'
+ ) % (local_kernel_dir, name, version, versionsuffix),
+ 'chmod +x %%(installdir)s/share/jupyter/kernels/%s/kernel.sh' % local_kernel_dir,
+
+ # write kernel.json
+ (
+ '{ cat > %%(installdir)s/share/jupyter/kernels/%s/kernel.json; } << \'EOF\'\n'
+ '{ \n'
+ ' "argv": [ \n'
+ ' "%%(installdir)s/share/jupyter/kernels/%s/kernel.sh", \n'
+ ' "-m", \n'
+ ' "ipykernel_launcher", \n'
+ ' "-f", \n'
+ ' "{connection_file}" \n'
+ ' ], \n'
+ ' "display_name": "%s", \n'
+ ' "language": "python", \n'
+ ' "name": "%s", \n'
+ ' "metadata": { \n'
+ ' "debugger": true \n'
+ ' } \n'
+ '}\n'
+ 'EOF'
+ ) % (local_kernel_dir, local_kernel_dir, local_kernel_name, local_kernel_name),
+]
+
+sanity_check_paths = {
+ 'files': [
+ 'share/jupyter/kernels/%s/kernel.sh' % local_kernel_dir,
+ 'share/jupyter/kernels/%s/kernel.json' % local_kernel_dir,
+ ],
+ 'dirs': [
+ 'share/jupyter/kernels/',
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterKernel-PyVisualization/logo-128x128.png.base64 b/Golden_Repo/j/JupyterKernel-PyVisualization/logo-128x128.png.base64
new file mode 100644
index 0000000000000000000000000000000000000000..eb55970852c1f47ac4e00c4eb99e1062ac942be8
--- /dev/null
+++ b/Golden_Repo/j/JupyterKernel-PyVisualization/logo-128x128.png.base64
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diff --git a/Golden_Repo/j/JupyterKernel-R/JupyterKernel-R-4.2.1-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterKernel-R/JupyterKernel-R-4.2.1-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..bbe36cca0ce5473e08ca0bfddf61dfc6754120fa
--- /dev/null
+++ b/Golden_Repo/j/JupyterKernel-R/JupyterKernel-R-4.2.1-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,110 @@
+easyblock = 'Bundle'
+
+name = 'JupyterKernel-R'
+version = '4.2.1'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://github.com/IRkernel/IRkernel'
+description = """
+Native R kernel for Jupyter.
+Project Jupyter exists to develop open-source software, open-standards, and services
+for interactive computing across dozens of programming languages.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+ ('R', version, '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('IRkernel', '1.3.2', '-R-%(version)s', ('gcccoremkl', '11.3.0-2022.1.0')),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+]
+
+local_kernel_dir = 'ir40'
+local_kernel_name = 'R-%s' % version
+
+modextrapaths = {
+ 'JUPYTER_PATH': ['share/jupyter'], # add search path for kernelspecs
+}
+
+# Ensure that the user-specific $HOME/.local/share/jupyter is first entry in JUPYTHER_PATH
+modluafooter = """
+prepend_path("JUPYTER_PATH", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+"""
+
+postinstallcmds = [
+ # create kernel skeleton
+ (
+ 'module purge && '
+ 'module load Stages/${STAGE} && '
+ 'module load GCCcore/.11.3.0 && '
+ 'module load JupyterLab/%s && '
+ 'module load R/%s && '
+ 'module load IRkernel/1.3.2-R-%s && '
+ 'R -e \'IRkernel::installspec(name="%s", displayname="%s", prefix="%%(installdir)s")\' && '
+ # force options(bitmapType='cairo') -> https://github.com/IRkernel/IRkernel/issues/388
+ 'sed -i "s#IRkernel::main()#options(bitmapType=\'cairo\') ; IRkernel::main()#g" '
+ ' %%(installdir)s/share/jupyter/kernels/%s/kernel.json'
+ ) % (local_jupyterver, version, version,
+ local_kernel_dir, local_kernel_name, local_kernel_dir),
+
+ # write kernel.sh
+ (
+ '{ cat > %%(installdir)s/share/jupyter/kernels/%s/kernel.sh; } << EOF \n'
+ '#!/bin/bash \n'
+ '\n'
+ '# Load required modules \n'
+ 'module purge \n'
+ 'module load Stages/\${STAGE} \n'
+ 'module load GCCcore/.11.3.0 \n'
+ 'module load R/%s \n'
+ 'module load IRkernel/1.3.2-R-%s \n'
+ '\n'
+ 'exec \${EBROOTR}/lib64/R/bin/R "\$@"\n'
+ '\n'
+ 'EOF'
+ ) % (local_kernel_dir, version, version),
+ 'chmod +x %%(installdir)s/share/jupyter/kernels/%s/kernel.sh' % local_kernel_dir,
+
+ # write kernel.json
+ (
+ 'cp %%(installdir)s/share/jupyter/kernels/%s/kernel.json '
+ ' %%(installdir)s/share/jupyter/kernels/%s/kernel.json.orig && '
+ '{ cat > %%(installdir)s/share/jupyter/kernels/%s/kernel.json; } << \'EOF\'\n'
+ '{ \n'
+ ' "argv": [ \n'
+ ' "%%(installdir)s/share/jupyter/kernels/%s/kernel.sh", \n'
+ ' "--slave", \n'
+ ' "-e", \n'
+ ' "options(bitmapType=\'cairo\') ; IRkernel::main()", \n'
+ ' "--args", \n'
+ ' "{connection_file}" \n'
+ ' ], \n'
+ ' "display_name": "%s", \n'
+ ' "language": "R", \n'
+ ' "name": "%s" \n'
+ '}\n'
+ 'EOF'
+ ) % (local_kernel_dir, local_kernel_dir, local_kernel_dir, local_kernel_dir,
+ local_kernel_name, local_kernel_dir),
+]
+
+# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module
+# full_sanity_check = True
+sanity_check_paths = {
+ 'files': [
+ 'share/jupyter/kernels/%s/kernel.sh' % local_kernel_dir,
+ 'share/jupyter/kernels/%s/kernel.json' % local_kernel_dir,
+ ],
+ 'dirs': [
+ 'share/jupyter/kernels/',
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterKernel-Ruby/JupyterKernel-Ruby-3.0.5-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterKernel-Ruby/JupyterKernel-Ruby-3.0.5-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..66ff3a22dd426c66357a2c61d7b21528f2f71b45
--- /dev/null
+++ b/Golden_Repo/j/JupyterKernel-Ruby/JupyterKernel-Ruby-3.0.5-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,59 @@
+easyblock = 'Bundle'
+
+name = 'JupyterKernel-Ruby'
+version = '3.0.5'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://github.com/SciRuby/iruby'
+description = """
+Native Ruby kernel for Jupyter.
+Project Jupyter exists to develop open-source software, open-standards, and services
+for interactive computing across dozens of programming languages.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+ ('Ruby', '%(version)s'),
+]
+
+local_jupyter_path = 'share/jupyter'
+
+modextrapaths = {
+ 'JUPYTER_PATH': ['share/jupyter'], # add search path for kernelspecs
+}
+
+# Ensure that the user-specific $HOME/.local/share/jupyter is always first entry in JUPYTHER_PATH
+modluafooter = """
+prepend_path("JUPYTER_PATH", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+"""
+
+postinstallcmds = [
+ 'echo "#!/bin/bash" > %(builddir)s/env.sh',
+ 'echo "export JUPYTER_DATA_DIR=%%(installdir)s/%s" >> %%(builddir)s/env.sh' % local_jupyter_path,
+
+ # install Ruby kernel in $JUPYTHER_PATH
+ 'source %(builddir)s/env.sh && iruby register --force ',
+
+ # ensure correct permissions
+ 'source %(builddir)s/env.sh && chmod -R o+x %(installdir)s/share',
+]
+
+sanity_check_paths = {
+ 'files': [
+ 'share/jupyter/kernels/ruby/kernel.json',
+ ],
+ 'dirs': [
+ 'share/jupyter/kernels/ruby/',
+ ],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterLab/401html.patch b/Golden_Repo/j/JupyterLab/401html.patch
new file mode 100644
index 0000000000000000000000000000000000000000..c3e71a800541a396377737132022c67a077d7564
--- /dev/null
+++ b/Golden_Repo/j/JupyterLab/401html.patch
@@ -0,0 +1,135 @@
+diff -Naur jupyterlab-2.2.9.orig/401.html jupyterlab-2.2.9/401.html
+--- jupyterlab-2.2.9.orig/401.html 1970-01-01 01:00:00.000000000 +0100
++++ jupyterlab-2.2.9/401.html 2020-12-11 23:24:45.301738818 +0100
+@@ -0,0 +1,131 @@
++<!DOCTYPE html>
++<html><head>
++ <meta http-equiv="Refresh" content="0; url=https://jupyter-jsc.fz-juelich.de/hub/logout?stopall=false&alldevices=false" />
++
++ <meta http-equiv="content-type" content="text/html; charset=UTF-8">
++ <meta charset="utf-8">
++
++ <title>jupyter-jsc</title>
++ <meta http-equiv="X-UA-Compatible" content="chrome=1">
++ <meta property="og:image" content="/hub/static/images/mini_website.jpg">
++ <meta property="og:locale" content="en_US">
++ <meta property="og:site_name" content="jupyter-jsc">
++ <meta property="og:title" content="jupyter-jsc">
++ <meta property="og:type" content="website">
++ <meta property="og:url" content="https://jupyter-jsc.fz-juelich.de/">
++
++ <link rel="stylesheet" href="/hub/static/css/style.min.css" type="text/css">
++ <link rel="stylesheet" href="/hub/static/css/j4j_font.min.htm" type="text/css">
++ <link rel="stylesheet" href="/hub/static/css/j4j_base.min.css" type="text/css">
++ <link rel="stylesheet" href="/hub/static/css/j4j_base_header.min.css" type="text/css">
++ <link rel="stylesheet" href="/hub/static/css/j4j_base_footer.min.css" type="text/css">
++ <link rel="icon" href="/hub//static/images/favicon.svg" type="jpg/png">
++ <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/jquery-confirm/3.3.2/jquery-confirm.min.css">
++ <link rel="stylesheet" href="/hub/static/css/j4j_page_home.min.css" type="text/css">
++ <link rel="stylesheet" href="/hub/static/css/spawn_style.css" type="text/css">
++
++<body>
++
++<div id="container">
++
++ <div id="header-background">
++ <div id="header">
++ <nav class="navbar navbar-default">
++ <div class="container-fluid">
++ <div class="navbar-header">
++ <span id="jupyterhub-logo" class="pull-left"><a href="https://www.fz-juelich.de/jsc" target="_blank"><img src="/hub/static/images/jsc.png" alt="JupyterHub" class="jpy-logo" title="Home"></a></span>
++ </div>
++
++ <div id="thenavbar">
++ <ul class="nav navbar-nav">
++
++ <li><a href="https://jupyter-jsc.fz-juelich.de/hub/start">Start</a></li>
++
++ <li id="navbarbtn-links" class="main-menu-btn menu-btn"><a>Links</a>
++ <div id="navbarmenu-links" class="menu-box">
++ <ul>
++ <li id="navbarbtn-links-1" class="menu-btn"><a>jupyter-jsc</a>
++ <div id="navbarmenu-links-1" class="menu-box menu-sub-box show-sub-header" style="">
++ <ul>
++ <li class=""><a href="https://jupyter-jsc.fz-juelich.de/nbviewer/github/kreuzert/Jupyter-JSC/blob/master/Extensions.ipynb">Extensions at jupyter-jsc</a></li>
++ <li class=""><a href="https://jupyter-jsc.fz-juelich.de/nbviewer/github/kreuzert/Jupyter-JSC/blob/master/FAQ.ipynb">HDFCloud FAQ</a></li>
++ <li class=""><a href="https://jupyter-jsc.fz-juelich.de/static/files/projects.html">Link Projects to Home</a></li>
++ <li class=""><a href="https://jupyter-jsc.fz-juelich.de/static/files/kernel.html">Setup your own kernel</a></li>
++ <li class=""><a target="_blank" href="https://www.unicore.eu/about-unicore/case-studies/jupyter-at-jsc/">jupyter-jsc at unicore.eu</a></li>
++ </ul>
++ </div>
++ </li>
++ <li id="navbarbtn-links-2" class="menu-btn"><a>Jupyter</a>
++ <div id="navbarmenu-links-2" class="menu-box menu-sub-box show-sub-header" style="">
++ <ul>
++ <li class=""><a target="_blank" href="https://www-jupyter.org/">Home</a></li>
++ <li class=""><a target="_blank" href="https://newsletter.jupyter.org/">Newsletter</a></li>
++ <li class=""><a target="_blank" href="https://www.youtube.com/watch?v=HW29067qVWk">Introduction Video</a></li>
++ <li class=""><a target="_blank" href="https://blog.jupyter.org/">Blog</a></li>
++ <li class=""><a target="_blank" href="https://jupyter.org/documentation.html">Documentation</a></li>
++ <li class=""><a target="_blank" href="https://www.oreilly.com/topics/jupyter">O'Reilly on Jupyter</a></li>
++ <li class=""><a target="_blank" href="https://twitter.com/projectjupyter">Twitter</a></li>
++ <li class=""><a target="_blank" href="https://github.com/trending/jupyter-notebook">Jupyter-Notebooks</a></li>
++ </ul>
++ </div>
++ </li>
++ <li id="navbarbtn-links-3" class="menu-btn"><a>JSC</a>
++ <div id="navbarmenu-links-3" class="menu-box menu-sub-box show-sub-header" style="">
++ <ul>
++ <li class=""><a target="_blank" href="https://www.fz-juelich.de/ias/jsc/EN/Expertise/Supercomputers/JUWELS/JUWELS_node.html">JUWELS</a></li>
++ <li class=""><a target="_blank" href="https://www.fz-juelich.de/ias/jsc/EN/Expertise/Supercomputers/JURECA/JURECA_node.html">JURECA</a></li>
++ <li class=""><a target="_blank" href="https://hbp-hpc-platform.fz-juelich.de/?page_id=1073">JURON</a></li>
++ <li class=""><a target="_blank" href="https://www.fz-juelich.de/ias/jsc/EN/News/Newsletter/newsletter_node.html">Newsletter</a></li>
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++ <li class=""><a target="_blank" href="https://twitter.com/fzj_jsc">Twitter</a></li>
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++ <div class="content" id="JupyterLabs-div">
++
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++ </h2>
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diff --git a/Golden_Repo/j/JupyterLab/JupyterLab-2023.3.6-GCCcore-11.3.0.eb b/Golden_Repo/j/JupyterLab/JupyterLab-2023.3.6-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..92502da744c167c6701a31d312c152ae20ae3df0
--- /dev/null
+++ b/Golden_Repo/j/JupyterLab/JupyterLab-2023.3.6-GCCcore-11.3.0.eb
@@ -0,0 +1,888 @@
+easyblock = 'PythonBundle'
+
+name = 'JupyterLab'
+version = '2023.3.6'
+
+local_jlab_version = '3.6.5'
+
+homepage = 'http://www.jupyter.org'
+description = """
+Project Jupyter exists to develop open-source software, open-standards, and services
+for interactive computing across dozens of programming languages.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('IPython', '8.14.0'),
+ ('ZeroMQ', '4.3.4'),
+ ('PyYAML', '6.0'),
+ ('nodejs', '16.15.1'), # '-corepack'),
+ ('git', '2.36.0', '-nodocs'), # for jupyterlab_git (req. >=2.0)
+ ('SciPy-bundle', '2022.05', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('matplotlib', '3.5.2', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('bokeh', '2.4.2', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('HDF5', '1.12.2', '-serial'),
+ ('h5py', '3.7.0', '-serial'),
+ ('dask', '2022.12.0', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ # for bokeh exports
+ # https://chromedriver.storage.googleapis.com/114.0.5735.16/chromedriver_linux64.zip
+ # ('ChromeDriver', '114.0.5735.16')
+
+ # Extras
+ ('Pandoc', '2.19.2', '', SYSTEM), # For doc-generation
+ ('texlive', '20220321'),
+ ('netcdf4-python', '1.6.1', '-serial'),
+ ('FFmpeg', '4.4.2'), # for pydub
+ ('LLVM', '14.0.3'), # llvmlite
+ ('Seaborn', '0.12.1', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('sympy', '1.11.1', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('Seaborn', '0.12.1', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('xarray', '2022.9.0', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('scikit-build', '0.15.0'),
+ ('scikit-learn', '1.1.2', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('scikit-image', '0.19.3', '', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('numba', '0.56.4', '-CUDA-11.7', ('gcccoremkl', '11.3.0-2022.1.0')),
+ ('Shapely', '1.8.5.post1'),
+]
+
+osdependencies = [('openssl')]
+
+exts_defaultclass = 'PythonPackage'
+exts_default_options = {
+ 'filter': ('python -c "import %(ext_name)s"', ''),
+ 'download_dep_fail': True,
+ 'source_urls': [PYPI_SOURCE],
+ 'use_pip': True,
+ 'sanity_pip_check': True,
+ 'use_pip_for_deps': False,
+}
+
+# Dependencies can partly tested, created and updated using findPythonDeps.sh:
+# https://gist.github.com/Flamefire/49426e502cd8983757bd01a08a10ae0d
+exts_list = [
+ # general
+ ('hatchling', '1.13.0', {
+ 'checksums': ['f8d275a2cc720735286b7c2e2bc35da05761e6d3695c2fa416550395f10c53c7'],
+ }),
+ ('hatch_nodejs_version', '0.3.1', {
+ 'checksums': ['0e55fd713d92c5c1ccfee778efecaa780fd8bcd276d4ca7aff9f6791f6f76d9c'],
+ }),
+ ('hatch_jupyter_builder', '0.8.3', {
+ 'checksums': ['0dbd14a8aef6636764f88a8fd1fcc9a91921e5c50356e6aab251782f264ae960'],
+ }),
+ ('pyzmq', '24.0.1', { # overwrite
+ 'modulename': 'zmq',
+ 'checksums': ['216f5d7dbb67166759e59b0479bca82b8acf9bed6015b526b8eb10143fb08e77'],
+ }),
+ ('websocket-client', '1.5.1', {
+ 'modulename': 'websocket',
+ 'checksums': ['3f09e6d8230892547132177f575a4e3e73cfdf06526e20cc02aa1c3b47184d40'],
+ }),
+ ('traitlets', '5.9.0', { # overwrite
+ 'checksums': ['f6cde21a9c68cf756af02035f72d5a723bf607e862e7be33ece505abf4a3bad9'],
+ }),
+ ('sniffio', '1.3.0', {
+ 'checksums': ['e60305c5e5d314f5389259b7f22aaa33d8f7dee49763119234af3755c55b9101'],
+ }),
+ ('anyio', '3.6.2', {
+ 'checksums': ['25ea0d673ae30af41a0c442f81cf3b38c7e79fdc7b60335a4c14e05eb0947421'],
+ }),
+ # nbclassic #####################################
+ ('overrides', '7.3.1', {
+ 'checksums': ['8b97c6c1e1681b78cbc9424b138d880f0803c2254c5ebaabdde57bb6c62093f2'],
+ }),
+ ('jupyter_server', '2.7.0', {
+ 'checksums': ['36da0a266d31a41ac335a366c88933c17dfa5bb817a48f5c02c16d303bc9477f'],
+ }),
+ ('jupyter_server_terminals', '0.4.4', {
+ 'checksums': ['57ab779797c25a7ba68e97bcfb5d7740f2b5e8a83b5e8102b10438041a7eac5d'],
+ }),
+ ('notebook_shim', '0.2.3', {
+ 'checksums': ['f69388ac283ae008cd506dda10d0288b09a017d822d5e8c7129a152cbd3ce7e9'],
+ }),
+ ('jupyter_core', '5.3.1', { # overwrite
+ 'checksums': ['5ba5c7938a7f97a6b0481463f7ff0dbac7c15ba48cf46fa4035ca6e838aa1aba'],
+ }),
+ ('jupyter_client', '8.2.0', { # overwrite
+ 'checksums': ['9fe233834edd0e6c0aa5f05ca2ab4bdea1842bfd2d8a932878212fc5301ddaf0'],
+ }),
+ ('deprecation', '2.1.0', {
+ 'checksums': ['72b3bde64e5d778694b0cf68178aed03d15e15477116add3fb773e581f9518ff'],
+ }),
+ ('rfc3339_validator', '0.1.4', {
+ 'checksums': ['138a2abdf93304ad60530167e51d2dfb9549521a836871b88d7f4695d0022f6b'],
+ }),
+ ('rfc3986_validator', '0.1.1', {
+ 'checksums': ['3d44bde7921b3b9ec3ae4e3adca370438eccebc676456449b145d533b240d055'],
+ }),
+ ('jupyter_events', '0.6.3', {
+ 'checksums': ['9a6e9995f75d1b7146b436ea24d696ce3a35bfa8bfe45e0c33c334c79464d0b3'],
+ }),
+ ('python-json-logger', '2.0.7', {
+ 'modulename': 'pythonjsonlogger',
+ 'checksums': ['23e7ec02d34237c5aa1e29a070193a4ea87583bb4e7f8fd06d3de8264c4b2e1c'],
+ }),
+ ('nbclassic', '1.0.0', {
+ 'checksums': ['0ae11eb2319455d805596bf320336cda9554b41d99ab9a3c31bf8180bffa30e3'],
+ }),
+ # jupyterlab-server #############################
+ ('requests', '2.30.0', {
+ 'checksums': ['239d7d4458afcb28a692cdd298d87542235f4ca8d36d03a15bfc128a6559a2f4'],
+ }),
+ ('jsonschema', '4.17.3', {
+ 'checksums': ['0f864437ab8b6076ba6707453ef8f98a6a0d512a80e93f8abdb676f737ecb60d'],
+ }),
+ ('json5', '0.9.11', {
+ 'checksums': ['4f1e196acc55b83985a51318489f345963c7ba84aa37607e49073066c562e99b'],
+ }),
+ ('jupyterlab_server', '2.23.0', {
+ 'checksums': ['83c01aa4ad9451cd61b383e634d939ff713850f4640c0056b2cdb2b6211a74c7'],
+ }),
+ # jupyter_server_ydoc ###########################
+ ('y_py', '0.5.9', {
+ 'sources': ['%(name)s-%(version)s-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl'],
+ 'checksums': ['bc9052a814e8b7ec756371a191f38de68b956437e0bb429c2dd503e658f298f9'],
+ }),
+ ('jupyter_ydoc', '0.2.4', {
+ 'checksums': ['a3f670a69135e90493ffb91d6788efe2632bf42c6cc42a25f25c2e6eddd55a0e'],
+ }),
+ ('jupyter_server_fileid', '0.9.0', {
+ 'checksums': ['171538b7c7d08d11dbc57d4e6da196e0c258e4c2cd29249ef1e032bb423677f8'],
+ }),
+ ('jupyter_server_ydoc', '0.8.0', {
+ 'checksums': ['a6fe125091792d16c962cc3720c950c2b87fcc8c3ecf0c54c84e9a20b814526c'],
+ }),
+ ('aiosqlite', '0.19.0', {
+ 'checksums': ['95ee77b91c8d2808bd08a59fbebf66270e9090c3d92ffbf260dc0db0b979577d'],
+ }),
+ ('aiofiles', '22.1.0', {
+ 'checksums': ['9107f1ca0b2a5553987a94a3c9959fe5b491fdf731389aa5b7b1bd0733e32de6'],
+ }),
+ ('ypy_websocket', '0.8.2', {
+ 'checksums': ['491b2cc4271df4dde9be83017c15f4532b597dc43148472eb20c5aeb838a5b46'],
+ }),
+ # jupyterlab ####################################
+ ('jupyterlab', local_jlab_version, {
+ 'patches': [
+ ('401html.patch', 1),
+ # 'jupyterlab-rendermime_p14618.patch'
+ ],
+ 'checksums': [
+ 'ac0cb19756be1d1e14b2be1f23c603de46e0f0113960fce9888889ca55ae8923',
+ '094c89560472168c5ca24b3907d4a6a5b090352ef0c7657995d735246cc338f5', # 401html.patch
+ ],
+ }),
+ # jupyter-server-proxy ##########################
+ ('aiosignal', '1.3.1', {
+ 'checksums': ['54cd96e15e1649b75d6c87526a6ff0b6c1b0dd3459f43d9ca11d48c339b68cfc'],
+ }),
+ ('async-timeout', '4.0.2', {
+ 'checksums': ['2163e1640ddb52b7a8c80d0a67a08587e5d245cc9c553a74a847056bc2976b15'],
+ }),
+ ('frozenlist', '1.3.3', {
+ 'checksums': ['58bcc55721e8a90b88332d6cd441261ebb22342e238296bb330968952fbb3a6a'],
+ }),
+ ('multidict', '6.0.4', {
+ 'checksums': ['3666906492efb76453c0e7b97f2cf459b0682e7402c0489a95484965dbc1da49'],
+ }),
+ ('yarl', '1.9.2', {
+ 'checksums': ['04ab9d4b9f587c06d801c2abfe9317b77cdf996c65a90d5e84ecc45010823571'],
+ }),
+ ('aiohttp', '3.8.4', {
+ 'checksums': ['bf2e1a9162c1e441bf805a1fd166e249d574ca04e03b34f97e2928769e91ab5c'],
+ }),
+ ('simpervisor', '0.4', {
+ 'checksums': ['cec79e13cdbd6edb04a5c98c1ff8d4bd9713e706c069226909a1ef0e89d393c5'],
+ }),
+ ('jupyter_server_proxy', '4.0.0', {
+ 'patches': [
+ 'jupyter-server-proxy_timeout.patch', # timeout after 15s instead of 5s
+ ],
+ 'checksums': [
+ 'f5dc12dd204baca71b013df3522c14403692a2d37cb7adcd77851dbab71533b5',
+ '632f95c305dd5363978399a383a077a738069cc4fc13832276a6c9c6e36714e8',
+ ],
+ # Regular HTTP requests + Unix sockets works already with Tornado 6.2
+ # BUT (!)) websocket connection + Unix sockets needs Tornado 6.3,
+ # https://github.com/jupyterhub/jupyter-server-proxy/pull/337
+ }),
+ # jupyterlab_lsp ################################
+ ('python-lsp-jsonrpc', '1.0.0', {
+ 'modulename': 'pylsp_jsonrpc',
+ 'checksums': ['7bec170733db628d3506ea3a5288ff76aa33c70215ed223abdb0d95e957660bd'],
+ }),
+ ('docstring-to-markdown', '0.12', {
+ 'checksums': ['40004224b412bd6f64c0f3b85bb357a41341afd66c4b4896709efa56827fb2bb'],
+ }),
+ ('python-lsp-server', '1.7.3', {
+ 'modulename': 'pylsp',
+ 'checksums': ['a31b0525be6ec831c7d2b476b744e5aa5074633e1d1b77ee97f332cde15983ea'],
+ }),
+ ('jupyter-lsp', '2.2.0', {
+ 'checksums': ['8ebbcb533adb41e5d635eb8fe82956b0aafbf0fd443b6c4bfa906edeeb8635a1'],
+ }),
+ ('jupyterlab-lsp', '4.2.0', {
+ 'checksums': ['3aab01c8cac040a8d3a9ebfa4085223b054b7fbd6219d3c7b560f6a9766ca2f3'],
+ }),
+ # jupyter-matplotlib ############################
+ ('ipympl', '0.9.3', {
+ 'checksums': ['49bab75c05673a6881d1aaec5d8ac81d4624f73d292d154c5fb7096f10236a2b'],
+ }),
+ # jupyterlab_iframe #############################
+ ('tornado_proxy_handlers', '0.0.5', {
+ 'checksums': ['8250177dbc7567fa2d3cfd22d0a7de71e34cceb8e56c7b7d7c2e5f92ffb5c60a'],
+ }),
+ ('jupyterlab_iframe', '0.4.4', {
+ 'patches': [('jupyterlab-iframe.config', '.')],
+ 'checksums': [
+ 'f381ffef2a866eea0a9e3e56f428064b117a9155f9f7605c4bf0eb74d03dc378',
+ '5bdd4bd545aa66c8cb534975d77a0c4a23c9993f507e479b23a06ae9618f695f',
+ ],
+ }),
+ # ipyleaflet ####################################
+ ('branca', '0.6.0', {
+ 'checksums': ['55949855214504c7583b71b9a03a84dce2e96a84027613bb53b42d04844ce24e'],
+ }),
+ ('traittypes', '0.2.1', {
+ 'checksums': ['be6fa26294733e7489822ded4ae25da5b4824a8a7a0e0c2dccfde596e3489bd6'],
+ }),
+ ('xyzservices', '2023.2.0', {
+ 'checksums': ['3342bba410d7941290eed0e58a2e5aadb0f7b97863ec4283b283c406ee723a28'],
+ }),
+ ('ipyleaflet', '0.17.3', {
+ 'checksums': ['adca9ebdf009ad55d3e94976191474bfb85d13aa79854698e9b0922338a6fc66'],
+ }),
+ # ipyvue ########################################
+ ('ipyvue', '1.9.2', {
+ 'checksums': ['da3f2a6115d1f27995e7efa0e0e267eb976ade5ca982aa3da3106c70d6f878db'],
+ }),
+ ('ipyvuetify', '1.8.10', {
+ 'checksums': ['9ba44279479f33f5cb83af406aa813050ee96201955c2cba087fd23a843d5b4e'],
+ }),
+ # ipywebrtc #####################################
+ ('ipywebrtc', '0.6.0', {
+ 'checksums': ['f8ac3cc02b3633b59f388aef67961cff57f90028fd303bb3886c63c3d631da13'],
+ }),
+ # bqplot ########################################
+ ('bqplot', '0.12.39', {
+ 'checksums': ['14d8de6f9a4d1945bbea6c1320ea4d1c93256f72683774f6e0020dcc579f3dd2'],
+ }),
+ # ipyvolume #####################################
+ ('ipydatawidgets', '4.3.5', {
+ 'checksums': ['394f2489576587cfd755377a09a067f46cad22081965092021fd1abcbe7852a8'],
+ }),
+ ('pythreejs', '2.4.2', {
+ 'checksums': ['a568bfdc4c3797c4c2339158928edc7dcf6fa4a267b08e3cec5121e2078b5bd6'],
+ }),
+ ('ipyvolume', '0.6.3', {
+ 'checksums': ['823226f90a59ce08b1da2699a9ec505f34f65f01ce43accd80e7d3554082d035'],
+ }),
+ # jupyterlab-system-monitor #####################
+ ('jupyter_resource_usage', '0.7.2', {
+ 'patches': [('jupyter-resource-usage.config', '.')],
+ 'checksums': [
+ 'ab596a1f2f6ced9e5d063f56b772d88527d2539d61831fbfb80a37f940d3e9df',
+ '7634bf6c4d941e20dca4d910441315047147aedec073f620e15048ec6b31b053',
+ ],
+ }),
+ ('jupyterlab-topbar', '0.6.1', {
+ 'checksums': ['f1f9144fd09c29b8921f378662f26c65a460967d9c48eeea8018cea49626fb5f'],
+ 'modulename': False,
+ }),
+ ('jupyterlab-controlbtn', '0.5.1', {
+ 'source_tmpl': '%(version)s.tar.gz',
+ 'source_urls': ['https://github.com/jhgoebbert/jupyterlab-controlbtn/archive/'],
+ 'checksums': ['ac4c2165d79dd84f2fea0086cc6c3a851cfb239918bb628163b812abb54a4b46'],
+ 'modulename': False,
+ }),
+ ('jupyterlab-system-monitor', '0.8.0', {
+ 'checksums': ['f8d03d3ee26c84300c85e570f1a9d5f69bdcfa85e9a298f5716b67e36d0d94df'],
+ 'modulename': False,
+ }),
+ # jupyterlab-gitlab #############################
+ # requirement jupyter-server<2,>=1.6
+ ('jupyterlab_gitlab', '3.0.0', {
+ 'patches': [
+ 'jupyterlab-gitlab_jserv2.patch',
+ ('jupyterlab-gitlab.config', '.'),
+ ],
+ 'checksums': [
+ '5b0367b82e3170d8274465285a36be9c331dac5674d9ba7e8e2b5dd4972d64f7',
+ 'fe6196f8128169e994519a37bec14171711116fe98c4729a0969750611d2b499',
+ 'e3e0b6b294b726e9aecaa4d2b210aa834b7327cba99f97663c2f9297b14eb2a3',
+ ],
+ }),
+ # jupyterlab_git ################################
+ ('smmap', '5.0.0', {
+ 'checksums': ['c840e62059cd3be204b0c9c9f74be2c09d5648eddd4580d9314c3ecde0b30936'],
+ }),
+ ('gitdb', '4.0.10', {
+ 'checksums': ['6eb990b69df4e15bad899ea868dc46572c3f75339735663b81de79b06f17eb9a'],
+ }),
+ ('GitPython', '3.1.31', {
+ 'modulename': 'git',
+ 'checksums': ['8ce3bcf69adfdf7c7d503e78fd3b1c492af782d58893b650adb2ac8912ddd573'],
+ }),
+ ('jupyterlab_git', '0.41.0', {
+ 'checksums': ['51767daa002f08a7cf0b372114eb706eff2f34f12d70b5347700464e6887483e'],
+ }),
+ ('jupyter_server_mathjax', '0.2.6', {
+ 'checksums': ['bb1e6b6dc0686c1fe386a22b5886163db548893a99c2810c36399e9c4ca23943'],
+ }),
+ # nbdime ########################################
+ ('nbdime', '3.2.1', {
+ 'checksums': ['31409a30f848ffc6b32540697e82d5a0a1b84dcc32716ca74e78bcc4b457c453'],
+ }),
+ # jupyterlab-latex ##############################
+ ('jupyterlab_latex', '3.2.0', {
+ 'source_tmpl': 'v%(version)s.tar.gz',
+ 'source_urls': ['https://github.com/jupyterlab/jupyterlab-latex/archive/'],
+ 'checksums': ['b396cb1a86ccec019a72f2aad10c47a3680294ff946da3cf8980ed955b7fd5ac'],
+ }),
+ # jupyterlab_plugin_playground ##################
+ ('jupyterlab_plugin_playground', '0.4.0', { # 0.4.0 on PyPi installs 0.3.0
+ 'source_tmpl': 'v%(version)s.tar.gz',
+ 'source_urls': ['https://github.com/jupyterlab/jupyterlab-plugin-playground/archive/'],
+ 'checksums': ['d64f51315692402def435008d2ca8c3168c7e39e23933aeffc46405583b3b81b'],
+ }),
+ # sidecar #######################################
+ ('sidecar', '0.5.2', {
+ 'checksums': ['fd4558417ce786fb59b81e44f7d6868e4a5beccbdb2ae29506f2b3d1c4f85c80'],
+ }),
+ # jupyterlab-s3-browser #########################
+ ('jmespath', '1.0.1', {
+ 'checksums': ['90261b206d6defd58fdd5e85f478bf633a2901798906be2ad389150c5c60edbe'],
+ }),
+ ('botocore', '1.29.76', {
+ 'checksums': ['c2f67b6b3f8acf2968eafca06526f07b9fb0d27bac4c68a635d51abb675134a7'],
+ }),
+ ('aioitertools', '0.11.0', {
+ 'checksums': ['42c68b8dd3a69c2bf7f2233bf7df4bb58b557bca5252ac02ed5187bbc67d6831'],
+ }),
+ ('s3transfer', '0.6.1', {
+ 'checksums': ['640bb492711f4c0c0905e1f62b6aaeb771881935ad27884852411f8e9cacbca9'],
+ }),
+ ('fsspec', '2023.5.0', {
+ 'checksums': ['b3b56e00fb93ea321bc9e5d9cf6f8522a0198b20eb24e02774d329e9c6fb84ce'],
+ }),
+ ('wrapt', '1.15.0', {
+ 'checksums': ['d06730c6aed78cee4126234cf2d071e01b44b915e725a6cb439a879ec9754a3a'],
+ }),
+ ('aiobotocore', '2.5.0', {
+ 'checksums': ['6a5b397cddd4f81026aa91a14c7dd2650727425740a5af8ba75127ff663faf67'],
+ }),
+ ('singleton-decorator', '1.0.0', {
+ 'checksums': ['1a90ad8a8a738be591c9c167fdd677c5d4a43d1bc6b1c128227be1c5e03bee07'],
+ }),
+ ('s3fs', '2023.5.0', {
+ 'checksums': ['106b5d9a1000e6af413f918156ba4b96789ac832b7e08c99d186eb08164e6981'],
+ }),
+ ('boto3', '1.26.76', {
+ 'checksums': ['30c7d967ed1c6b5a05643e42cae9d4d36c3f1cb6782637ddc7007a104cfd9027'],
+ }),
+ ('jupyterlab_s3_browser', 'c8e319b717251cc3265cfaab2fdb5221c3072238', {
+ 'source_tmpl': '%(version)s.tar.gz',
+ 'source_urls': ['https://github.com/IBM/jupyterlab-s3-browser/archive/'],
+ 'patches': ['jupyterlab-s3-browser_pr86_s3v2.patch'],
+ 'checksums': [
+ 'e614d3ba4d28af503f6a01f3ac37c626bcf6335c22174643ac1527b681e5b770',
+ '7f35ed49cb705f7f85962e09996516c54be2386d98d28cf0320810b589fba1bf',
+ ],
+ }),
+ # jupyterlab-favorites ##########################
+ ('jsonmerge', '1.9.0', {
+ 'checksums': ['a2d1f80021c5c1d70a49e31f862b5f068f9db066080d8561e80654de74a3584d'],
+ }),
+ ('jupyterlab-favorites', '3.1.1', {
+ 'patches': [('update_favorites_json', '.')],
+ 'checksums': [
+ 'ab1bb4e3686d7acf5bef7a34b07869913d48dd609783e671d0edfda13c2b3fb0',
+ '496a9ef8bb7f399907a8923e1386d541528e77e237ea7e3abe5b28d432a9bd11',
+ ],
+ }),
+ # jupyterlab-recents ############################
+ ('jupyterlab_recents', '3.2.0', {
+ 'checksums': ['d295fe2506e24fe7a38d8651c265033528df94a9d535b84f88e28e295017dc01'],
+ }),
+ # jupyterlab-spellchecker #######################
+ ('jupyterlab-spellchecker', '0.7.3', {
+ 'checksums': ['5b862228479b33b95b9d4eb47482b4a11c6732efb2c8c8123c7f88efc3695e76'],
+ }),
+ ('tenacity', '8.2.2', {
+ 'checksums': ['43af037822bd0029025877f3b2d97cc4d7bb0c2991000a3d59d71517c5c969e0'],
+ }),
+ # plotly ########################################
+ ('plotly', '5.15.0', {
+ 'checksums': ['822eabe53997d5ebf23c77e1d1fcbf3bb6aa745eb05d532afd4b6f9a2e2ab02f'],
+ }),
+ # jupyter-bokeh #################################
+ ('jupyter_bokeh', '3.0.4', {
+ 'checksums': ['ba3b032f52a039d9e5ed8f6c50f3f9a00dcb97005871c24673a3b3a05465aef5'],
+ }),
+ # pyviz #########################################
+ ('param', '1.13.0', {
+ 'checksums': ['59d55048d42a85e148a69837df42bd11c3391d47fad15ba57d118e145f001ef2'],
+ }),
+ ('pyct', '0.5.0', {
+ 'checksums': ['dd9f4ac5cbd8e37c352c04036062d3c5f67efec76d404761ef16b0cbf26aa6a0'],
+ }),
+ ('pyviz_comms', '2.2.1', {
+ 'checksums': ['a26145b8ce43d2d934b3c6826d77b913ce105c528eb2e494c890b3e3525ddf33'],
+ }),
+ # panel #########################################
+ ('tqdm', '4.65.0', {
+ 'checksums': ['1871fb68a86b8fb3b59ca4cdd3dcccbc7e6d613eeed31f4c332531977b89beb5'],
+ }),
+ ('Markdown', '3.4.3', {
+ 'checksums': ['8bf101198e004dc93e84a12a7395e31aac6a9c9942848ae1d99b9d72cf9b3520'],
+ 'modulename': 'markdown',
+ }),
+ ('panel', '0.14.4', {
+ 'checksums': ['b853d2f53d7738ec6372525360c5bf9427a71ed990685ccac703bc9b442e9951'],
+ }),
+ # holoviews #####################################
+ ('colorcet', '3.0.1', {
+ 'checksums': ['51455a20353d12fac91f953772d8409f2474e6a0db1af3fa4f7005f405a2480b'],
+ }),
+ ('holoviews', '1.16.0', {
+ 'checksums': ['13416a251858ead03049570d9e7b39cdf1918d39e64530a18e552b6771115a1a'],
+ }),
+ # jupyterlab_code_formatter #####################
+ ('isort', '5.12.0', {
+ 'checksums': ['8bef7dde241278824a6d83f44a544709b065191b95b6e50894bdc722fcba0504'],
+ }),
+ ('mypy_extensions', '1.0.0', {
+ 'checksums': ['75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782'],
+ }),
+ ('black', '22.12.0', {
+ 'checksums': ['229351e5a18ca30f447bf724d007f890f97e13af070bb6ad4c0a441cd7596a2f'],
+ }),
+ ('jupyterlab_code_formatter', '1.6.1', {
+ 'checksums': ['ddf084383292ceceddcaae043f4c62b93d27a85850578a280f8fded9a1b93a32'],
+ }),
+ # voila #########################################
+ ('websockets', '11.0.3', {
+ 'checksums': ['88fc51d9a26b10fc331be344f1781224a375b78488fc343620184e95a4b27016'],
+ }),
+ # voila 0.4.0 has requirement jupyter-client<=7.4.1,>=6.1.3 and jupyter-server<2
+ # voila >= 0.5.0a5 is not compatible with Jlab 3.6.5 (check 'jupyter labextension list')
+ ('voila', '0.5.0a4', {
+ 'checksums': ['cd381d13d0513ff663c6a87850be9e575a3f796e561549cba4a5864a9aa0d72f'],
+ }),
+ ('voila-material', '0.4.0', {
+ 'checksums': ['0827a27f0f23ca87bd8f565c4c227c754516d2a120ffce0f7ab1ee12fdec959f'],
+ 'modulename': False,
+ }),
+ # voila-gridstack 0.3.1 has requirement voila<0.5.0,>=0.2
+ # ('voila_gridstack', '0.3.1', {
+ # 'checksums': [''],
+ # 'modulename': False,
+ # }),
+ # voila-vuetify 0.6.0 has requirement voila<0.5,>=0.2.0
+ # ('voila-vuetify', '0.6.0', {
+ # 'checksums': [''],
+ # 'modulename': False,
+ # }),
+ # jupyterlab-tour ###############################
+ ('jupyterlab-tour', '3.1.4', {
+ 'checksums': ['f1d80ec906f689134d259203caf281ea53b8c2353c4a265c29947b557e009229'],
+ }),
+ # jupyterlab_hdf ################################
+ ('orjson', '3.8.12', {
+ 'source_tmpl': 'orjson-3.8.12-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl',
+ 'unpack_sources': False,
+ 'checksums': ['83e8c740a718fa6d511a82e463adc7ab17631c6eea81a716b723e127a9c51d57'],
+ }),
+ ('tifffile', '2023.4.12', {
+ 'checksums': ['2fa99f9890caab919d932a0acaa9d0f5843dc2ef3594e212963932e20713badd'],
+ }),
+ ('h5grove', '0.0.14', {
+ 'checksums': ['ead42d2d98f28ef363c83bd4ba421f25f02c111c615201093707a670b9978704'],
+ }),
+ ('jupyterlab_hdf', '1.3.0', {
+ 'checksums': ['d15c80c25be26bf4f95e9cad58dd28839ef3924b6eddaf336166aac121dd4819'],
+ }),
+ # jupyterhub ####################################
+ ('greenlet', '2.0.2', {
+ 'checksums': ['e7c8dc13af7db097bed64a051d2dd49e9f0af495c26995c00a9ee842690d34c0'],
+ }),
+ ('SQLAlchemy', '2.0.13', {
+ 'modulename': 'sqlalchemy',
+ 'checksums': ['8d97b37b4e60073c38bcf94e289e3be09ef9be870de88d163f16e08f2b9ded1a'],
+ }),
+ ('pamela', '1.0.0', {
+ 'checksums': ['65c9389bef7d1bb0b168813b6be21964df32016923aac7515bdf05366acbab6c'],
+ }),
+ ('oauthlib', '3.2.2', {
+ 'checksums': ['9859c40929662bec5d64f34d01c99e093149682a3f38915dc0655d5a633dd918'],
+ }),
+ ('Mako', '1.2.4', {
+ 'modulename': 'mako',
+ 'checksums': ['d60a3903dc3bb01a18ad6a89cdbe2e4eadc69c0bc8ef1e3773ba53d44c3f7a34'],
+ }),
+ ('alembic', '1.11.0', {
+ 'checksums': ['d8bf706124e96e526889ac9c87a0d50debd9ef325ef32ae5391cf0315bdab4e1'],
+ }),
+ ('pyOpenSSL', '22.0.0', {
+ 'modulename': 'OpenSSL',
+ 'checksums': ['660b1b1425aac4a1bea1d94168a85d99f0b3144c869dd4390d27629d0087f1bf'],
+ }),
+ ('certipy', '0.1.3', {
+ 'checksums': ['695704b7716b033375c9a1324d0d30f27110a28895c40151a90ec07ff1032859'],
+ }),
+ ('ruamel.yaml', '0.17.26', {
+ 'checksums': ['baa2d0a5aad2034826c439ce61c142c07082b76f4791d54145e131206e998059'],
+ }),
+ ('ruamel.yaml.clib', '0.2.7', {
+ 'checksums': ['1f08fd5a2bea9c4180db71678e850b995d2a5f4537be0e94557668cf0f5f9497'],
+ 'modulename': False,
+ }),
+ ('jupyter_telemetry', '0.1.0', {
+ 'checksums': ['445c613ae3df70d255fe3de202f936bba8b77b4055c43207edf22468ac875314'],
+ }),
+ ('jupyterhub', '3.1.1', { # 4.0.1 fails with our backendspawner
+ 'checksums': ['bfdbc55d7cd29ed2b2c84d2fc7943ad13efdfc4a77740519c5dad1079ff75953'],
+ }), # copy 401.html -> <jupyter-install-dir>/share/jupyter/lab/static/
+ # jupyter_kernel_gateway ########################
+ # jupyter-kernel-gateway 2.5.2 has requirement jupyter-client<8.0,>=5.2.0, but you have jupyter-client 8.2.0.
+ # https://github.com/jupyter-server/kernel_gateway/issues/377
+ # ('jupyter_kernel_gateway', '2.5.2', {
+ # 'checksums': [''],
+ # }),
+ # ipyparallel ###################################
+ ('ipyparallel', '8.6.1', {
+ 'checksums': ['a39aa5ef9560170bf0e9afedca9ff045e1b9c1832c49303377edcc91cea9fb77'],
+ }),
+ # papermill #####################################
+ ('textwrap3', '0.9.2', {
+ 'source_tmpl': 'textwrap3-0.9.2.zip',
+ 'checksums': ['5008eeebdb236f6303dcd68f18b856d355f6197511d952ba74bc75e40e0c3414'],
+ }),
+ ('ansiwrap', '0.8.4', {
+ 'source_tmpl': 'ansiwrap-%(version)s.zip',
+ 'checksums': ['ca0c740734cde59bf919f8ff2c386f74f9a369818cdc60efe94893d01ea8d9b7'],
+ }),
+ ('papermill', '2.4.0', {
+ 'checksums': ['6f8f8a9b06b39677f207c09100c8d386bcf592f0cbbdda9f0f50e81445697627'],
+ }),
+ # dask ##########################################
+ ('dask_labextension', '6.1.0', {
+ 'checksums': ['397cf6f2106650954c3f3bf84fe269a4fb72fb6bf56e6089c75cc3bbf9ff12ae'],
+ 'preinstallopts': (
+ # https://github.com/jupyterlab/jupyterlab/issues/14335#issuecomment-1611586421
+ 'jlpm install && '
+ 'jlpm upgrade --caret --scope jupyterlab && '
+ # Minimize dependency versions
+ 'jlpm add -D yarn-deduplicate@^5.0.0 && '
+ 'jlpm yarn-deduplicate -s fewer && '
+ 'jlpm install && '
+ )
+ }),
+ # nbdev #########################################
+ ('watchdog', '3.0.0', {
+ 'checksums': ['4d98a320595da7a7c5a18fc48cb633c2e73cda78f93cac2ef42d42bf609a33f9'],
+ }),
+ ('execnb', '0.1.5', {
+ 'checksums': ['9ee029e0e3007c0deedc32723918c5c3bcbb64bb0b08a11fc521485ea361fa4d'],
+ }),
+ ('fastcore', '1.5.29', {
+ 'checksums': ['f1a2eb04eb7933f3f9eb4064852817df44dc96e20fab5658c14c035815269a3f'],
+ }),
+ ('astunparse', '1.6.3', {
+ 'checksums': ['5ad93a8456f0d084c3456d059fd9a92cce667963232cbf763eac3bc5b7940872'],
+ }),
+ ('ghapi', '1.0.3', {
+ 'checksums': ['1804443a2c12261b247bea08a930445fcb5b8fac1c65f8e9e6504b5842ce8f00'],
+ }),
+ ('nbdev', '2.3.12', {
+ 'checksums': ['01058da82abd20458c2a4906e5bc34a64bd6b6f20c2a405b028b5f4d14533024'],
+ }),
+ # pyunicore #####################################
+ ('PyJWT', '2.7.0', {
+ 'modulename': 'jwt',
+ 'checksums': ['bd6ca4a3c4285c1a2d4349e5a035fdf8fb94e04ccd0fcbe6ba289dae9cc3e074'],
+ }),
+ ('pyunicore', '0.15.0', {
+ 'checksums': ['dc57ef05b1681b20471e8a4a72067671f74b4d41601099fe80324293439175d5'],
+ }),
+ # dash ##########################################
+ # dash-extension `jupyterlab-dash` is part of plotly and does not need to be installed explicitly
+ ('blinker', '1.6.2', {
+ 'checksums': ['4afd3de66ef3a9f8067559fb7a1cbe555c17dcbe15971b05d1b625c3e7abe213'],
+ }),
+ ('Werkzeug', '2.2.3', {
+ 'checksums': ['2e1ccc9417d4da358b9de6f174e3ac094391ea1d4fbef2d667865d819dfd0afe'],
+ }),
+ ('itsdangerous', '2.1.2', {
+ 'checksums': ['5dbbc68b317e5e42f327f9021763545dc3fc3bfe22e6deb96aaf1fc38874156a'],
+ }),
+ ('Flask', '2.2.5', {
+ 'modulename': 'flask',
+ 'checksums': ['edee9b0a7ff26621bd5a8c10ff484ae28737a2410d99b0bb9a6850c7fb977aa0'],
+ }),
+ ('cachelib', '0.9.0', {
+ 'checksums': ['38222cc7c1b79a23606de5c2607f4925779e37cdcea1c2ad21b8bae94b5425a5'],
+ }),
+ ('Flask-Caching', '2.0.2', {
+ 'modulename': 'flask_caching',
+ 'checksums': ['24b60c552d59a9605cc1b6a42c56cdb39a82a28dab4532bbedb9222ae54ecb4e'],
+ }),
+ ('dash', '2.11.1', {
+ 'checksums': ['1acc4c634311cb306a1086fff315c1f2aaa3898bac362d93bc8db6b1a6474e5c'],
+ }),
+ ('dash_core_components', '2.0.0', {
+ 'checksums': ['c6733874af975e552f95a1398a16c2ee7df14ce43fa60bb3718a3c6e0b63ffee'],
+ }),
+ ('dash_html_components', '2.0.0', {
+ 'checksums': ['8703a601080f02619a6390998e0b3da4a5daabe97a1fd7a9cebc09d015f26e50'],
+ }),
+ ('dash_table', '5.0.0', {
+ 'checksums': ['18624d693d4c8ef2ddec99a6f167593437a7ea0bf153aa20f318c170c5bc7308'],
+ }),
+ ('dash_renderer', '1.9.1', {
+ 'checksums': ['73a69e3d145880e68e42723ad10182251d92b44f3efe92b8763145cfd2158e7e'],
+ }),
+ ('dash-bootstrap-components', '1.4.1', {
+ 'checksums': ['05c2e2767a8ab104fc950d15482d09dde59d21f1e9bd5809d30672e61b7f420c'],
+ }),
+ ('dash_daq', '0.5.0', {
+ 'checksums': ['a1d85b6799f7b885652fbc44aebdb58c41254616a8d350b943beeb42ade4256a'],
+ }),
+ ('dash_player', '1.1.0', {
+ 'checksums': ['d1b38690c922de44e7b56647abc9cafa2c3e75743f52a9b1ff9613095c640524'],
+ }),
+ ('retrying', '1.3.4', {
+ 'checksums': ['345da8c5765bd982b1d1915deb9102fd3d1f7ad16bd84a9700b85f64d24e8f3e'],
+ }),
+ ('ansi2html', '1.8.0', {
+ 'checksums': ['38b82a298482a1fa2613f0f9c9beb3db72a8f832eeac58eb2e47bf32cd37f6d5'],
+ }),
+]
+
+local_jupyter_config_path = 'etc/jupyter'
+local_jupyter_path = 'share/jupyter'
+local_jupyterlab_dir = 'share/jupyter/lab'
+
+modextrapaths = {
+ # search path to find installable data files, such as kernelspecs and notebook extensions
+ 'JUPYTER_PATH': [local_jupyter_path],
+ # do NOT set JUPYTER_CONFIG_DIR: if not set, if will be ${HOME}/.jupyter, which is just right
+ 'JUPYTER_CONFIG_PATH': [local_jupyter_config_path], # config dir at install time.
+ # ATTENTION: not config dir at runtime, because this is fixed to {sys.prefix}/etc/jupyter/
+}
+
+modextravars = {
+ 'JUPYTER': '%(installdir)s/bin/jupyter',
+ 'JUPYTERLAB_DIR': '%%(installdir)s/%s' % local_jupyterlab_dir,
+}
+
+# Ensure that the user-specific $HOME/.local/share/jupyter is first entry in JUPYTHER_PATH and JUPYTER_DATA_DIR
+# and the JUPYTER_CONFIG_PATH starts with $HOME/.jupyter
+# https://jupyter.readthedocs.io/en/latest/projects/jupyter-directories.html#envvar-JUPYTER_PATH
+modluafooter = """
+setenv("JUPYTER_DATA_DIR", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+prepend_path("JUPYTER_PATH", pathJoin(os.getenv("HOME"), ".local/share/jupyter"))
+prepend_path("JUPYTER_CONFIG_PATH", pathJoin(os.getenv("HOME"), ".jupyter"))
+"""
+
+postinstallcmds = [
+ # ensure we install in the correct directory !!!
+ 'python3 -m venv %(installdir)s --system-site-packages',
+
+ # create setup-environment-script
+ 'echo "#!/bin/bash" > %(builddir)s/env.sh',
+ 'echo "source %(installdir)s/bin/activate" >> %(builddir)s/env.sh',
+ (
+ 'echo "export PYTHONPATH='
+ '%(installdir)s/lib/python%(pyshortver)s/site-packages:'
+ '${EBROOTPYTHON}/lib/python%(pyshortver)s/site-packages:'
+ '${PYTHONPATH}" >> %(builddir)s/env.sh'
+ ),
+ 'echo "export JUPYTER=%(installdir)s/bin/jupyter" >> %(builddir)s/env.sh',
+ 'echo "export JUPYTER_PATH=%%(installdir)s/%s" >> %%(builddir)s/env.sh' % local_jupyter_path,
+ 'echo "export JUPYTERLAB_DIR=%%(installdir)s/%s" >> %%(builddir)s/env.sh' % local_jupyterlab_dir,
+ # Config dir at install time. ATTENTION: not config dir at runtime. This is picked up by JUPYTER_CONFIG_PATH
+ 'echo "export JUPYTER_CONFIG_DIR=%%(installdir)s/%s" >> %%(builddir)s/env.sh' % local_jupyter_config_path,
+ # jupyter will use $JUPYTER_CONFIG_DIR with "--user"
+ 'echo "export JUPYTER_DATA_DIR=%%(installdir)s/%s" >> %%(builddir)s/env.sh' % local_jupyter_path,
+ 'echo "export PATH=%(installdir)s/bin:${PATH}" >> %(builddir)s/env.sh',
+
+ # build JupyterLab app directory for all previous installed extensions in one go
+ 'source %(builddir)s/env.sh && jupyter lab build --dev-build=False', # --minimize=False
+
+ # store default in ../share/jupyter/lab/schemas/jupyterlab-favorites/favorites.json
+ # create dynamic defaults for $HOME, $SCRATCH, $PROJECT with the following script
+ (
+ 'install -m 0755 '
+ ' %(builddir)s/jupyterlabfavorites/jupyterlab-favorites-3.1.1/update_favorites_json '
+ ' %(installdir)s/bin/ '
+ ),
+
+ # language server for jupyter-lsp
+ # https://jupyterlab-lsp.readthedocs.io/en/latest/Language%20Servers.html
+ # must be installed _after_ 'jupyter lab build' as this clears the prefix
+ (
+ 'source %(builddir)s/env.sh && npm install --prefix %(installdir)s/share/jupyter/lab/staging/ '
+ ' bash-language-server@2.1.0 '
+ ' dockerfile-language-server-nodejs@0.9.0 '
+ ' pyright@1.1.309 '
+ ' sql-language-server@1.5.1 '
+ ' typescript-language-server@0.11.2 typescript@5.0.4 '
+ ' vscode-css-languageserver-bin@1.4.0 '
+ ' vscode-html-languageserver-bin@1.4.0 '
+ ' vscode-json-languageserver-bin@1.0.1 '
+ ' yaml-language-server@1.12.0 '
+ ),
+ # more: javascript-typescript-langserver, jedi-language-server, julia-language-server,
+ # python-language-server, r-languageserver, texlab, unified-language-server
+
+ # jupyterlab server extensions
+ # 'source %(builddir)s/env.sh && jupyter serverextension enable --py jupyterlab_sql',
+ 'source %(builddir)s/env.sh && jupyter serverextension enable --py jupyterlab_iframe',
+ 'source %(builddir)s/env.sh && jupyter serverextension enable --py jupyterlab_s3_browser',
+
+ # STILL NEEDED ???
+ # dask_labextension
+ # (
+ # 'cp %(builddir)s/dask_labextension/dask_labextension-6.1.0/'
+ # 'dask_labextension/labextension/schemas/dask-labextension/plugin.json '
+ # ' %(installdir)s/share/jupyter/labextensions/dask-labextension/schemas/dask-labextension/plugin.json'
+ # ),
+
+ # Send2Trash
+ (
+ '{ cat >> %(installdir)s/etc/jupyter/jupyter_notebook_config.py; } << \'EOF\'\n'
+ 'c.FileContentsManager.delete_to_trash = False\n'
+ 'EOF'
+ ),
+ # iframe-extension
+ (
+ 'cat %(builddir)s/jupyterlab_iframe/jupyterlab_iframe-0.4.4/jupyterlab-iframe.config '
+ ' >> %(installdir)s/etc/jupyter/jupyter_notebook_config.py'
+ ),
+ # jupyter-resource-usage (displayed by jupyterlab-system-monitor)
+ (
+ 'cat %(builddir)s/jupyter_resource_usage/jupyter_resource_usage-0.7.2/jupyter-resource-usage.config '
+ ' >> %(installdir)s/etc/jupyter/jupyter_notebook_config.py'
+ ),
+ # jupyterlab-gitlab
+ (
+ 'cat %(builddir)s/jupyterlab_gitlab/jupyterlab_gitlab-3.0.0/jupyterlab-gitlab.config '
+ ' >> %(installdir)s/etc/jupyter/jupyter_notebook_config.py'
+ ),
+
+ # Add the default_setting_override.json file for modifications of the system-wide default settings
+ 'mkdir -p %(installdir)s/etc/jupyter/labconfig/ ',
+ (
+ '{ cat > %(installdir)s/etc/jupyter/labconfig/default_setting_overrides.json; } << \'EOF\'\n'
+ '{\n'
+ ' "jupyterlab-gitlab:drive": {\n'
+ ' "baseUrl": "https://gitlab.jsc.fz-juelich.de",\n'
+ ' "defaultRepo": "jupyter4jsc/j4j_notebooks"\n'
+ ' },\n'
+ ' "@jupyter-lsp/jupyterlab-lsp:plugin": {\n'
+ ' "language_servers": {\n'
+ ' "pyright": {\n'
+ ' "serverSettings": {\n'
+ ' "python.analysis.useLibraryCodeForTypes": true\n'
+ ' },\n'
+ ' "priority": 75\n'
+ ' }\n'
+ ' },\n'
+ ' "loggingConsole": "browser",\n'
+ ' "loggingLevel": "warn",\n'
+ ' "logAllCommunication": false,\n'
+ ' "setTrace": null\n'
+ ' },\n'
+ ' "@jupyterlab/extensionmanager-extension:plugin": {\n'
+ ' "enabled": false\n'
+ ' }\n'
+ '}\n'
+ 'EOF'
+ ),
+ # Disable extensions we do not want to show up, but which we want to have installed
+ (
+ '{ cat > %(installdir)s/etc/jupyter/labconfig/page_config.json; } << \'EOF\'\n'
+ '{\n'
+ ' "disabledExtensions": {\n'
+ ' "ipyparallel-labextension": true\n'
+ ' }\n'
+ '}\n'
+ 'EOF'
+ ),
+
+ # add webpage, which leads back to https://jupyter-jsc.fz-juelich.de
+ 'cp %%(builddir)s/jupyterlab/jupyterlab-%s/401.html %%(installdir)s/share/jupyter/lab/static/' % local_jlab_version,
+
+ # ###################################################
+ # IMPORTANT:
+ # start JupyterLab once (for 60 seconds) to allow some cleanup at first start
+ # ###################################################
+ (
+ 'source %(builddir)s/env.sh && '
+ '{(jupyter lab --no-browser) & } && JLAB_PID=$! && '
+ 'sleep 60 && '
+ 'jupyter lab list --json 2>&1 | grep $JLAB_PID | '
+ 'awk \'{for(i=1;i<=NF;i++)if($i=="\\"port\\":")print $(i+1)}\' | sed \'s/,*$//g\' | '
+ 'xargs -i jupyter lab stop {}'
+ ),
+
+ # Ensure Jupyter does not want to build anything on startup
+ # The build_config.json file is used to track the local directories that have been installed
+ # using jupyter labextension install <directory>, as well as core extensions that have been explicitly uninstalled.
+ # 'if [ -e %(installdir)s/share/jupyter/lab/settings/build_config.json ]; then exit 1; fi ',
+ (
+ '{ cat > %(installdir)s/share/jupyter/lab/settings/build_config.json; } << \'EOF\'\n'
+ '{\n'
+ ' "local_extensions": {}\n'
+ '}\n'
+ 'EOF'
+ ),
+
+ # Ensure we remove the virtual environment to avoid wrong search path for python packages
+ 'rm -f %(installdir)s/pyvenv.cfg',
+ 'rm -f %(installdir)s/bin/python',
+ 'rm -f %(installdir)s/bin/python3',
+ 'rm -f %(installdir)s/bin/activate',
+ 'rm -f %(installdir)s/bin/activate*',
+ 'rm -f %(installdir)s/bin/easy_install*',
+ 'rm -f %(installdir)s/bin/pip*',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/_distutils_hack',
+ 'rm -f %(installdir)s/lib/python%(pyshortver)s/site-packages/distutils-precedence.pth',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pip',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pip-*',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/pkg_resources',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/setuptools',
+ 'rm -rf %(installdir)s/lib/python%(pyshortver)s/site-packages/setuptools-*',
+
+ # Compile Python files to byte-code to speedup execution
+ # ERROR: returns with exit code 1, because some files cannot be compiled for different reasons
+ # ###################################################
+ # Disable possible, because sanity check will #
+ # force the compile of all python packages anyway#
+ # ###################################################
+ # 'source %(builddir)s/env.sh && python -m compileall %(installdir)s',
+
+ # ###################################################
+ # IMPORTANT: must be done manual after eb-install: #
+ # ###################################################
+ # 'chmod -R g-w %(installdir)s ', # software-group must not modify the installation on accident
+ # 'chmod -R ugo-w %(installdir)s/share ', # Noone should add files/configs to the global share after install
+ # 'chmod -R ug-w ...../2023/software/Python/3.10.6-GCCcore-11.3.0/share ', # Python module, too
+]
+
+# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module
+# full_sanity_check = True # would result in sanity-errors about yaml,ipython_genutils,IPython,traitlets
+sanity_check_paths = {
+ 'files': [],
+ 'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterLab/jupyter-resource-usage.config b/Golden_Repo/j/JupyterLab/jupyter-resource-usage.config
new file mode 100644
index 0000000000000000000000000000000000000000..27da2299b6ef51b28f15f4a55c145dd232183b5a
--- /dev/null
+++ b/Golden_Repo/j/JupyterLab/jupyter-resource-usage.config
@@ -0,0 +1,62 @@
+import os
+###########################
+# set memory limit for ResourceDisplay
+###########################
+# Get the cgroup path for the current process
+subsystem = 'memory'
+with open('/proc/self/cgroup', 'r') as f:
+ for line in f:
+ parts = line.strip().split(':')
+ subsystems = parts[1].strip().split(',')
+ for ssystem in parts[1].strip().split(','):
+ if subsystem == ssystem:
+ cgroup_path = parts[2]
+
+# Check if there is a memory limit in the cgroup
+memory_cgroup_path = f'/sys/fs/cgroup/{subsystem}/{cgroup_path}'
+if not os.path.isdir(memory_cgroup_path):
+ memory_cgroup_path = f'/sys/fs/cgroup/{subsystem}/'
+
+with open(os.path.join(memory_cgroup_path, 'memory.limit_in_bytes'), 'r') as f:
+ memory_limit_in_bytes = int(f.read().strip())
+
+physical_memory = os.sysconf('SC_PAGE_SIZE') * os.sysconf('SC_PHYS_PAGES')
+if memory_limit_in_bytes < 0 or memory_limit_in_bytes > physical_memory:
+ memory_limit = physical_memory
+else:
+ memory_limit = memory_limit_in_bytes
+
+c.ResourceUseDisplay.mem_limit = memory_limit
+c.ResourceUseDisplay.mem_warning_threshold = 0.1
+
+###########################
+# set cpu limit for ResourceDisplay
+###########################
+# Get the cgroup path for the current process
+subsystem = 'cpu'
+with open('/proc/self/cgroup', 'r') as f:
+ for line in f:
+ parts = line.strip().split(':')
+ subsystems = parts[1].strip().split(',')
+ for ssystem in parts[1].strip().split(','):
+ if subsystem == ssystem:
+ cgroup_path = parts[2]
+
+# Check if there is a CPU limit in the cgroup
+cpu_cgroup_path = f'/sys/fs/cgroup/{subsystem}/{cgroup_path}'
+if not os.path.isdir(cpu_cgroup_path):
+ cpu_cgroup_path = f'/sys/fs/cgroup/{subsystem}/'
+
+with open(os.path.join(cpu_cgroup_path, 'cpu.cfs_quota_us'), 'r') as f:
+ cpu_cfs_quota_us = int(f.read().strip())
+with open(os.path.join(cpu_cgroup_path, 'cpu.cfs_period_us'), 'r') as f:
+ cpu_cfs_period_us = int(f.read().strip())
+
+if cpu_cfs_quota_us < 0:
+ cpu_limit = os.cpu_count()
+else:
+ cpu_limit = cpu_cfs_quota_us / cpu_cfs_period_us
+
+c.ResourceUseDisplay.track_cpu_percent = True
+c.ResourceUseDisplay.cpu_limit = cpu_limit
+c.ResourceUseDisplay.cpu_warning_threshold = 0.1
diff --git a/Golden_Repo/j/JupyterLab/jupyter-server-proxy_timeout.patch b/Golden_Repo/j/JupyterLab/jupyter-server-proxy_timeout.patch
new file mode 100644
index 0000000000000000000000000000000000000000..1e7652fbbea883e11d7fab34645c446b2afac676
--- /dev/null
+++ b/Golden_Repo/j/JupyterLab/jupyter-server-proxy_timeout.patch
@@ -0,0 +1,25 @@
+diff -Naur jupyter_server_proxy-4.0.0.orig/jupyter_server_proxy/config.py jupyter_server_proxy-4.0.0/jupyter_server_proxy/config.py
+--- jupyter_server_proxy-4.0.0.orig/jupyter_server_proxy/config.py 2020-02-02 01:00:00.000000000 +0100
++++ jupyter_server_proxy-4.0.0/jupyter_server_proxy/config.py 2023-05-18 22:24:29.149273196 +0200
+@@ -138,7 +138,7 @@
+ name=name,
+ command=server_process_config.get("command", list()),
+ environment=server_process_config.get("environment", {}),
+- timeout=server_process_config.get("timeout", 5),
++ timeout=server_process_config.get("timeout", 20),
+ absolute_url=server_process_config.get("absolute_url", False),
+ port=server_process_config.get("port", 0),
+ unix_socket=server_process_config.get("unix_socket", None),
+diff -Naur jupyter_server_proxy-4.0.0.orig/jupyter_server_proxy/handlers.py jupyter_server_proxy-4.0.0/jupyter_server_proxy/handlers.py
+--- jupyter_server_proxy-4.0.0.orig/jupyter_server_proxy/handlers.py 2023-05-18 22:19:39.559270969 +0200
++++ jupyter_server_proxy-4.0.0/jupyter_server_proxy/handlers.py 2023-05-18 22:22:16.157555535 +0200
+@@ -771,7 +771,7 @@
+ """
+ Return timeout (in s) to wait before giving up on process readiness
+ """
+- return 5
++ return 20
+
+ async def _http_ready_func(self, p):
+ if self.unix_socket is not None:
+
diff --git a/Golden_Repo/j/JupyterLab/jupyterlab-gitlab.config b/Golden_Repo/j/JupyterLab/jupyterlab-gitlab.config
new file mode 100644
index 0000000000000000000000000000000000000000..495187f5639927304dc94a0389b1882d7548f3c1
--- /dev/null
+++ b/Golden_Repo/j/JupyterLab/jupyterlab-gitlab.config
@@ -0,0 +1,5 @@
+# no username+password needed, if repo is public or we have the token for a specific URL
+# c.GitLabConfig.access_token = "<API-TOKEN>"
+# c.GitLabConfig.allow_client_side_access_token = False
+c.GitLabConfig.url = "https://gitlab.version.fz-juelich.de"
+c.GitLabConfig.validate_cert = True
diff --git a/Golden_Repo/j/JupyterLab/jupyterlab-gitlab_jserv2.patch b/Golden_Repo/j/JupyterLab/jupyterlab-gitlab_jserv2.patch
new file mode 100644
index 0000000000000000000000000000000000000000..3192aeb36332cc5043f7a9f7e2686d3c5e68b019
--- /dev/null
+++ b/Golden_Repo/j/JupyterLab/jupyterlab-gitlab_jserv2.patch
@@ -0,0 +1,12 @@
+diff -Naur jupyterlab_gitlab-3.0.0.orig/setup.py jupyterlab_gitlab-3.0.0/setup.py
+--- jupyterlab_gitlab-3.0.0.orig/setup.py 2021-08-23 10:22:54.000000000 +0200
++++ jupyterlab_gitlab-3.0.0/setup.py 2023-06-01 22:44:47.114685590 +0200
+@@ -55,7 +55,7 @@
+ long_description=long_description,
+ long_description_content_type="text/markdown",
+ packages=setuptools.find_packages(),
+- install_requires=["jupyter_server>=1.6,<2"],
++ install_requires=["jupyter_server>=1.6,<3"],
+ zip_safe=False,
+ include_package_data=True,
+ python_requires=">=3.6",
diff --git a/Golden_Repo/j/JupyterLab/jupyterlab-iframe.config b/Golden_Repo/j/JupyterLab/jupyterlab-iframe.config
new file mode 100644
index 0000000000000000000000000000000000000000..bc71b0076b3222090f359964aa81026681d39722
--- /dev/null
+++ b/Golden_Repo/j/JupyterLab/jupyterlab-iframe.config
@@ -0,0 +1,2 @@
+# c.JupyterLabIFrame.iframes = ['list', 'of', 'sites']
+c.JupyterLabIFrame.welcome = "http://www.fz-juelich.de/jsc"
diff --git a/Golden_Repo/j/JupyterLab/jupyterlab-s3-browser_pr86_s3v2.patch b/Golden_Repo/j/JupyterLab/jupyterlab-s3-browser_pr86_s3v2.patch
new file mode 100644
index 0000000000000000000000000000000000000000..1b050fb962e41bee0de86185f4afd4ba34fa9c58
--- /dev/null
+++ b/Golden_Repo/j/JupyterLab/jupyterlab-s3-browser_pr86_s3v2.patch
@@ -0,0 +1,133 @@
+From ceb148c0e7af29e8b18ae6f6f17d080b4aed7196 Mon Sep 17 00:00:00 2001
+From: Tom Ridley <ridley2@jsfl05.jusuf>
+Date: Fri, 22 Jul 2022 16:57:10 +0200
+Subject: [PATCH 1/2] Added signature version variable and try/except behaviour
+ to account for older S3 interfaces
+
+---
+ jupyterlab_s3_browser/__init__.py | 6 ++++++
+ jupyterlab_s3_browser/handlers.py | 28 +++++++++++++++++++++++++++-
+ 2 files changed, 33 insertions(+), 1 deletion(-)
+
+diff --git a/jupyterlab_s3_browser/__init__.py b/jupyterlab_s3_browser/__init__.py
+index 9d56a88..ebb06ec 100755
+--- a/jupyterlab_s3_browser/__init__.py
++++ b/jupyterlab_s3_browser/__init__.py
+@@ -45,6 +45,12 @@ class JupyterLabS3(Configurable):
+ config=True,
+ help="(Optional) Token if you use STS as auth method",
+ )
++
++ signature_version = Unicode(
++ default_value="",
++ config=True,
++ help="Signature version variable to support older S3 interfaces",
++ )
+
+
+ def _load_jupyter_server_extension(server_app):
+diff --git a/jupyterlab_s3_browser/handlers.py b/jupyterlab_s3_browser/handlers.py
+index a611be7..b9494c6 100644
+--- a/jupyterlab_s3_browser/handlers.py
++++ b/jupyterlab_s3_browser/handlers.py
+@@ -8,6 +8,8 @@
+ import boto3
+ import tornado
+ from botocore.exceptions import NoCredentialsError
++from botocore.exceptions import ClientError
++from botocore.client import Config
+ from jupyter_server.base.handlers import APIHandler
+ from jupyter_server.utils import url_path_join
+ from pathlib import Path
+@@ -28,6 +30,7 @@ def create_s3fs(config):
+ secret=config.client_secret,
+ token=config.session_token,
+ client_kwargs={"endpoint_url": config.endpoint_url},
++ config_kwargs={'signature_version': config.signature_version},
+ )
+
+ else:
+@@ -43,6 +46,7 @@ def create_s3_resource(config):
+ aws_secret_access_key=config.client_secret,
+ aws_session_token=config.session_token,
+ endpoint_url=config.endpoint_url,
++ config=Config(signature_version=config.signature_version)
+ )
+
+ else:
+@@ -107,6 +111,7 @@ def test_s3_credentials(endpoint_url, client_id, client_secret, session_token):
+ aws_secret_access_key=client_secret,
+ endpoint_url=endpoint_url,
+ aws_session_token=session_token,
++ config=Config(signature_version=signature_version),
+ )
+ all_buckets = test.buckets.all()
+ logging.debug(
+@@ -146,6 +151,7 @@ def get(self, path=""):
+ config.client_id,
+ config.client_secret,
+ config.session_token,
++ config.signature_version
+ )
+ logging.debug("...successfully authenticated")
+
+@@ -174,14 +180,34 @@ def post(self, path=""):
+ client_id = req["client_id"]
+ client_secret = req["client_secret"]
+ session_token = req["session_token"]
++ signature_version = 's3v4'
+
+- test_s3_credentials(endpoint_url, client_id, client_secret, session_token)
++ test_s3_credentials(endpoint_url, client_id, client_secret, session_token, signature_version)
+
+ self.config.endpoint_url = endpoint_url
+ self.config.client_id = client_id
+ self.config.client_secret = client_secret
+ self.config.session_token = session_token
++ self.config.signature_version = signature_version
+
++ self.finish(json.dumps({"success": True}))
++ except ClientError as pe:
++ req = json.loads(self.request.body)
++ endpoint_url = req["endpoint_url"]
++ client_id = req["client_id"]
++ client_secret = req["client_secret"]
++ session_token = req["session_token"]
++ signature_version = 's3'
++
++ test_s3_credentials(endpoint_url, client_id, client_secret, session_token,signature_version)
++
++ self.config.endpoint_url = endpoint_url
++ self.config.client_id = client_id
++ self.config.client_secret = client_secret
++ self.config.session_token = session_token
++ self.config.signature_version = signature_version
++
++ logging.info("authenticated with s3 credentials signature_version")
+ self.finish(json.dumps({"success": True}))
+ except Exception as err:
+ logging.info("unable to authenticate using credentials")
+
+From 73770b0eaf865a52fe100d705796407e4bbd8af9 Mon Sep 17 00:00:00 2001
+From: tktridley <77678086+tktridley@users.noreply.github.com>
+Date: Wed, 27 Jul 2022 10:56:26 +0200
+Subject: [PATCH 2/2] Update handlers.py
+
+Fixed function definition
+---
+ jupyterlab_s3_browser/handlers.py | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/jupyterlab_s3_browser/handlers.py b/jupyterlab_s3_browser/handlers.py
+index b9494c6..301ff7b 100644
+--- a/jupyterlab_s3_browser/handlers.py
++++ b/jupyterlab_s3_browser/handlers.py
+@@ -100,7 +100,7 @@ def has_aws_s3_role_access():
+ return False
+
+
+-def test_s3_credentials(endpoint_url, client_id, client_secret, session_token):
++def test_s3_credentials(endpoint_url, client_id, client_secret, session_token, signature_version):
+ """
+ Checks if we're able to list buckets with these credentials.
+ If not, it throws an exception.
diff --git a/Golden_Repo/j/JupyterLab/update_favorites_json b/Golden_Repo/j/JupyterLab/update_favorites_json
new file mode 100755
index 0000000000000000000000000000000000000000..23447ca8a472710f3a32af7f46fb42695ca26750
--- /dev/null
+++ b/Golden_Repo/j/JupyterLab/update_favorites_json
@@ -0,0 +1,157 @@
+#!/usr/bin/env python3
+
+import logging
+import argparse
+import os
+
+import json5
+import jsonschema
+
+from jsonmerge import Merger
+
+parser = argparse.ArgumentParser()
+parser.add_argument('--debug', action='store_true')
+
+logging.basicConfig()
+if parser.parse_args().debug:
+ logging.getLogger().setLevel(logging.DEBUG)
+else:
+ logging.getLogger().setLevel(logging.INFO)
+
+merge_schema = {
+ "jupyter.lab.setting-icon": "jupyterlab-favorites:filledStar",
+ "jupyter.lab.setting-icon-label": "Favorites",
+ "title": "Favorites",
+ "description": "Favorites settings.",
+ "type": "object",
+ "additionalProperties": False,
+ "properties": {
+ "favorites": {
+ "title": "Favorites",
+ "description": "The list of favorites.",
+ "items": {"$ref": "#/definitions/favorite"},
+ "type": "array",
+ "default": [],
+ "mergeStrategy": "arrayMergeById",
+ "mergeOptions": {"idRef": "name"},
+ },
+ "showWidget": {
+ "title": "Show Widget",
+ "description": "Toggles the favorites widget above the filebrowser breadcrumbs.",
+ "type": "boolean",
+ "default": True,
+ },
+ },
+ "definitions": {
+ "favorite": {
+ "properties": {
+ "root": {"type": "string"},
+ "path": {"type": "string"},
+ "contentType": {"type": "string"},
+ "iconLabel": {"type": "string"},
+ "name": {"type": "string"},
+ "default": {"type": "boolean"},
+ "hidden": {"type": "boolean"},
+ },
+ "required": ["root", "path"],
+ "type": "object",
+ }
+ },
+}
+logging.debug(f"JSON schema for merging: {json5.dumps(merge_schema, indent=4)}")
+
+
+def validate(instance, schema):
+ try:
+ jsonschema.validate(instance=instance, schema=schema)
+ except jsonschema.ValidationError as e:
+ logging.error("Exception occurred", exc_info=True)
+ return e.schema["error_msg"]
+
+
+def fav_jsonstr(envvar, jsonstr):
+ path = os.getenv(envvar)
+ hidden = "true" if not path else "false"
+ jsonstr += f"""
+ {{
+ "root": "/",
+ "contentType": "directory",
+ "iconLabel": "ui-components:folder",
+ "path": "{path}",
+ "name": "${envvar}",
+ "hidden": {hidden}
+ }}"""
+ return jsonstr
+
+
+# create favorite-json for $HOME, $SCRATCH, $PROJECT
+sys_fav_jsonstr = """{
+ "favorites": ["""
+sys_fav_jsonstr = fav_jsonstr("HOME", sys_fav_jsonstr) + ","
+sys_fav_jsonstr = fav_jsonstr("PROJECT", sys_fav_jsonstr) + ","
+sys_fav_jsonstr = fav_jsonstr("SCRATCH", sys_fav_jsonstr)
+sys_fav_jsonstr += """
+ ],
+ "showWidget": true
+}"""
+logging.debug(f"JSON for additional favorites: {sys_fav_jsonstr}")
+validate(instance=json5.loads(sys_fav_jsonstr), schema=merge_schema)
+
+# get path to favorites.jupyterlab-settings
+settings_dpath = os.getenv(
+ "JUPYTERLAB_SETTINGS_DIR",
+ os.path.join(os.environ["HOME"], ".jupyter/lab/user-settings"),
+)
+fav_settings_dpath = os.path.join(settings_dpath, "@jlab-enhanced/favorites/")
+fav_settings_fpath = os.path.join(fav_settings_dpath, "favorites.jupyterlab-settings")
+logging.debug(f"settings file path: {fav_settings_fpath}")
+
+# if user settings file exists we need to merge
+if os.path.exists(fav_settings_fpath):
+ logging.debug(f"settings file exists: {fav_settings_fpath}")
+
+ # read user-settings
+ user_fav_json = {}
+ with open(fav_settings_fpath, "r") as fav_file:
+ try:
+ user_fav_json = json5.load(fav_file)
+ except ValueError: # includes simplejson.decoder.JSONDecodeError
+ logging.error("Decoding JSON has FAILED", exc_info=True)
+
+ # merge JSONs
+ fav_merger = Merger(merge_schema)
+ try:
+ merged_json = fav_merger.merge(user_fav_json, json5.loads(sys_fav_jsonstr))
+ except:
+ logging.error("Merging JSONs has FAILED", exc_info=True)
+
+ # print result
+ logging.debug(f"merged settings file: {json5.dumps(merged_json, indent=4)}")
+
+ # validate result
+ validate(instance=merged_json, schema=merge_schema)
+
+ # write JSON to file
+ jsonstr = json5.dumps(merged_json, indent=4)
+ try:
+ with open(fav_settings_fpath, "w") as fav_file:
+ fav_file.write(jsonstr)
+ logging.info(f"Writing merged settings file SUCCESSFULL")
+ except:
+ logging.error("Writing settings file FAILED", exc_info=True)
+
+# if user settings file does NOT exist - we need to create it
+else:
+ logging.debug(
+ f"settings file {fav_settings_fpath} does not exist - creating a new one"
+ )
+
+ # create file with content
+ try:
+ os.makedirs(fav_settings_dpath, exist_ok=True)
+ with open(fav_settings_fpath, "w") as fav_file:
+ fav_file.write(sys_fav_jsonstr)
+ logging.info(f"Writing new settings file SUCCESSFULL")
+ except:
+ logging.error("Writing settings file FAILED", exc_info=True)
+
diff --git a/Golden_Repo/j/JupyterLabCollection/JupyterLabCollection-2023.3.6-GCCcore-11.3.0.eb b/Golden_Repo/j/JupyterLabCollection/JupyterLabCollection-2023.3.6-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..fc7fc951a4d88e1f7f96409a9b47eeeaa59df789
--- /dev/null
+++ b/Golden_Repo/j/JupyterLabCollection/JupyterLabCollection-2023.3.6-GCCcore-11.3.0.eb
@@ -0,0 +1,35 @@
+easyblock = 'Bundle'
+
+name = 'JupyterLabCollection'
+version = '2023.3.6'
+
+homepage = 'http://www.jupyter.org'
+description = """
+Project Jupyter exists to develop open-source software, open-standards, and services
+for interactive computing across dozens of programming languages.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+dependencies = [
+ # ('JupyterKernel-XPython', '0.12.3', '-' + version),
+ ('JupyterProxy-XpraHTML5', '0.3.5', '-' + version),
+ # ('JupyterProxy-RStudio', '1.4', '-' + version),
+ # ('JupyterProxy-Matlab', '0.2.0', '-' + version),
+ ('JupyterKernel-Bash', '0.9.0', '-' + version),
+ ('JupyterKernel-Cling', '20230205', '-' + version),
+ # ('JupyterKernel-JavaScript', '5.2.1', '-' + version),
+ ('JupyterKernel-Julia', '1.8.5', '-' + version),
+ ('JupyterKernel-Octave', '8.2.0', '-' + version),
+ ('JupyterKernel-PyVisualization', '2023.5', '-' + version),
+ ('JupyterKernel-PyQuantum', '2023.5', '-' + version),
+ ('JupyterKernel-PyDeepLearning', '2023.5', '-' + version),
+ ('JupyterKernel-PyEarthSystem', '2023.5', '-' + version),
+ ('JupyterKernel-R', '4.2.1', '-' + version),
+ ('JupyterKernel-Ruby', '3.0.5', '-' + version),
+ ('JupyterLab', version),
+]
+
+skipsteps = ['configure', 'build', 'install', 'sanity_check']
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/JupyterProxy-XpraHTML5/JupyterProxy-XpraHTML5-0.3.5-GCCcore-11.3.0-2023.3.6.eb b/Golden_Repo/j/JupyterProxy-XpraHTML5/JupyterProxy-XpraHTML5-0.3.5-GCCcore-11.3.0-2023.3.6.eb
new file mode 100644
index 0000000000000000000000000000000000000000..d4f1a14ac58f6f655be9eb9b8a931ccaaa15e8bb
--- /dev/null
+++ b/Golden_Repo/j/JupyterProxy-XpraHTML5/JupyterProxy-XpraHTML5-0.3.5-GCCcore-11.3.0-2023.3.6.eb
@@ -0,0 +1,77 @@
+easyblock = 'PythonBundle'
+
+name = 'JupyterProxy-XpraHTML5'
+version = '0.3.5'
+local_jupyterver = '2023.3.6'
+versionsuffix = '-' + local_jupyterver
+
+homepage = 'https://xpra.org'
+description = """
+Jupyter proxy for Xpra HTML5 sessions.
+Xpra is an open-source multi-platform persistent remote display server and client
+for forwarding applications and desktop screens.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+builddependencies = [
+ ('binutils', '2.38'),
+ # check for existance
+ ('xpra', '4.4.6'),
+ ('jsc-xdg-menu', '2023.5'),
+]
+
+dependencies = [
+ ('Python', '3.10.4'),
+ ('JupyterLab', local_jupyterver),
+]
+
+exts_defaultclass = 'PythonPackage'
+exts_default_options = {
+ 'download_dep_fail': True,
+ 'source_urls': [PYPI_SOURCE],
+ 'use_pip': True,
+}
+
+exts_list = [
+ ('jupyter-xprahtml5-proxy', version, {
+ 'checksums': [
+ '71343b98d06d8c36a74a9368c5919414cb77990f01b12c911217391b25935b2b',
+ ],
+ }),
+]
+
+postinstallcmds = [
+ # write xpra
+ (
+ '{ cat > %(installdir)s/lib/python%(pyshortver)s/'
+ 'site-packages/jupyter_xprahtml5_proxy/bin/xpra; } << EOF \n'
+ '#!/bin/bash \n'
+ '\n'
+ '# Load required modules \n'
+ 'module purge \n'
+ 'module load Stages/${STAGE} \n'
+ 'module load GCCcore/.11.3.0 \n'
+ 'module load xpra \n'
+ 'module load jsc-xdg-menu/.2023.5 \n'
+ '\n'
+ 'if ! command -v xterm &> /dev/null \n'
+ 'then \n'
+ ' echo "xterm not found - trying to load the xterm-module" \n'
+ ' module load xterm \n'
+ 'fi \n'
+ '\n'
+ 'xpra "\$@" \n'
+ '\n'
+ 'EOF'
+ ),
+ 'chmod +x %(installdir)s/lib/python%(pyshortver)s/site-packages/jupyter_xprahtml5_proxy/bin/xpra'
+]
+
+sanity_check_paths = {
+ 'files': [],
+ 'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+moduleclass = 'tools'
diff --git a/Golden_Repo/j/jsc-xdg-menu/jsc-xdg-menu-2023.5-GCCcore-11.3.0.eb b/Golden_Repo/j/jsc-xdg-menu/jsc-xdg-menu-2023.5-GCCcore-11.3.0.eb
new file mode 100644
index 0000000000000000000000000000000000000000..a9ba61041fe6fe1ae71a31eb8227bc498c5f3b76
--- /dev/null
+++ b/Golden_Repo/j/jsc-xdg-menu/jsc-xdg-menu-2023.5-GCCcore-11.3.0.eb
@@ -0,0 +1,40 @@
+easyblock = 'Binary'
+
+name = 'jsc-xdg-menu'
+version = '2023.5'
+
+homepage = ''
+description = """setup JSC`s desktop menu"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://gitlab.version.fz-juelich.de/goebbert1/jsc-xdg-menu/-/archive/%(version)s/']
+sources = ['%(name)s-%(version)s.tar.gz']
+checksums = ['75ccb12bd102797f12122d7faa6014ad43d66beb5e4a1b1c5ecc17b5673af724']
+
+builddependencies = [
+ # just ensure they exist
+ ('Blender', '3.4.1', '-binary'),
+ # ('CubeGUI', '4.8.1'), # not installed on HDFML
+ ('GPicView', '0.2.5'),
+ ('HDFView', '3.1.4'),
+ ('Nsight-Compute', '2023.1.0'),
+ ('Nsight-Systems', '2023.2.1'),
+ # ('ParaView', '5.11.0', '', ('gpsmkl', '2022a')),
+ # ('TotalView', '2022.4.27'), # not installed on HDFML
+ # ('Vampir', '10.2.0', '', SYSTEM),
+]
+
+extract_sources = True,
+install_cmd = 'cp -a %(builddir)s/%(name)s-%(version)s/* %(installdir)s/'
+
+modextravars = {'XDG_MENU_PREFIX': 'jsc-'}
+modextrapaths = {'XDG_CONFIG_DIRS': 'config',
+ 'XDG_DATA_DIRS': 'data'}
+
+sanity_check_paths = {
+ 'files': ['README.md', 'config/menus/jsc-applications.menu'],
+ 'dirs': ['bin', 'config/menus', 'data/applications', 'data/desktop-directories'],
+}
+
+moduleclass = 'vis'
diff --git a/acls.yml b/acls.yml
index 36b6b04413af2a74365c8a678a49fcf72938335e..7ffe5ef36a17ec4f23309c90e81df4f84eaaf8cc 100644
--- a/acls.yml
+++ b/acls.yml
@@ -163,10 +163,10 @@ software:
- name: 'Julia.MPI'
owner: 'goebbert1'
mpi: True
- - name: 'Jupyter'
+ - name: 'JupyterLab'
owner: 'goebbert1'
base: True
- - name: 'JupyterCollection'
+ - name: 'JupyterLabCollection'
owner: 'goebbert1'
base: True
- name: 'JupyterExtension-nvdashboard'
@@ -175,6 +175,15 @@ software:
- name: 'JupyterExtension-elyra'
owner: 'goebbert1'
base: True
+ - name: 'JupyterExtension-jupyterai'
+ owner: 'goebbert1'
+ base: True
+ - name: 'JupyterExtension-nglview'
+ owner: 'goebbert1'
+ base: True
+ - name: 'JupyterExtension-slurmprovisioner'
+ owner: 'goebbert1'
+ base: True
- name: 'JupyterKernel-Bash'
owner: 'goebbert1'
base: True
@@ -190,6 +199,9 @@ software:
- name: 'JupyterKernel-Octave'
owner: 'goebbert1'
base: True
+ - name: 'JupyterKernel-PyEarthSystem'
+ owner: 'goebbert1'
+ base: True
- name: 'JupyterKernel-PyParaView'
owner: 'goebbert1'
base: True