diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index d49d5a22b5de0015541ee1a4d4d05a124c75d5c1..387d08db2f62e895156d48c31f931aa788bf179b 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -44,6 +44,14 @@ check_style:
     - echo "List of files to be checked $eb_list"
     - for i in $eb_list; do
     - echo "Checking $(basename $i) ..."
+    - if [[ $(basename $i) == *AMBER* ]]; then
+    - sg amber eb --check-style --check-contrib $i || faulty="$faulty $i"
+    - elif [[ $(basename $i) == *CPMD* ]]; then
+    - sg cpmd eb --check-style --check-contrib $i || faulty="$faulty $i"
+    - elif [[ $(basename $i) == *NAMD* ]]; then
+    - sg namd eb --check-style --check-contrib $i || faulty="$faulty $i"
+    - else
     - eb --check-style --check-contrib $i || faulty="$faulty $i"
+    - fi
     - done
     - if [ -n "$faulty" ]; then echo "Faulty EasyConfigs... $faulty"; exit 1; fi