diff --git a/readme.md b/readme.md index d94767ebeea86f26b7f5ca97ce6f69ec7715b71b..389256f5b8c2a9bf6b142608805dd969e223b8e3 100644 --- a/readme.md +++ b/readme.md @@ -51,7 +51,7 @@ them into the workflow. This can e.g. mean that a compilation step is added in t setting appropriate environment variables is included in the activation step. ## Singularity -A useful alternative to environment modules are container-based environments. +A useful alternative to environment modules are container-based environments. ToDo: More Details # Details The setup is configured in the bash script `config.sh`. The user can define a name for the venv and directory @@ -79,9 +79,3 @@ by jupyter and a helper script in the virtual environment folder. -# Intended Workflow -1. Edit `config.sh` to change name an location of the venv if required. -2. Edit `modules.sh` to change the modules loaded prior to the creation of the venv. -3. Edit `requirements.txt` to change the packages to be installed during setup. -4. Edit `setup.sh` and `activate.sh` to add extra steps for custom modules. -5. Create a kernel with `create_kernel.sh`