From 29b665e36f918090d1f76b2a6f0a201c57107c7e Mon Sep 17 00:00:00 2001
From: Scarlet Stadtler <stadtler1@juwels04.ib.juwels.fzj.de>
Date: Fri, 20 Mar 2020 12:05:14 +0100
Subject: [PATCH] In oder to get the environment running we try to modify the
scripts. We load Tensorflow by module load and we removed h5py. And I removed
the --installed flag.
---
env_setup/create_env.sh | 2 +-
env_setup/modules.sh | 2 +-
env_setup/requirements.txt | 4 +--
requirements.txt | 72 --------------------------------------
4 files changed, 3 insertions(+), 77 deletions(-)
delete mode 100644 requirements.txt
diff --git a/env_setup/create_env.sh b/env_setup/create_env.sh
index 2fc89b91..0edfb019 100755
--- a/env_setup/create_env.sh
+++ b/env_setup/create_env.sh
@@ -20,7 +20,7 @@ source ${ENV_SETUP_DIR}/modules.sh
# Install additional Python packages.
python3 -m venv $ENV_DIR
source ${ENV_DIR}/bin/activate
-pip3 install --ignore-installed -r requirements.txt
+pip3 install -r requirements.txt
#pip3 install --user netCDF4
#pip3 install --user numpy
diff --git a/env_setup/modules.sh b/env_setup/modules.sh
index 59043046..e6793787 100755
--- a/env_setup/modules.sh
+++ b/env_setup/modules.sh
@@ -7,6 +7,6 @@ module load MVAPICH2/.2.3.1-GDR
module load GCCcore/.8.3.0
module load mpi4py/3.0.1-Python-3.6.8
module load h5py/2.9.0-serial-Python-3.6.8
-#module load TensorFlow/1.13.1-GPU-Python-3.6.8
+module load TensorFlow/1.13.1-GPU-Python-3.6.8
module load cuDNN/7.5.1.10-CUDA-10.1.105
diff --git a/env_setup/requirements.txt b/env_setup/requirements.txt
index b8b224b9..05510675 100644
--- a/env_setup/requirements.txt
+++ b/env_setup/requirements.txt
@@ -1,7 +1,5 @@
-tensorflow-gpu>=1.9.0
opencv-python
scipy
scikit-image
-h5py
pandas
-netCDF4
\ No newline at end of file
+netCDF4
diff --git a/requirements.txt b/requirements.txt
deleted file mode 100644
index e8d3c528..00000000
--- a/requirements.txt
+++ /dev/null
@@ -1,72 +0,0 @@
-absl-py==0.8.0
-astor==0.8.0
-atomicwrites==1.3.0
-attrs==19.1.0
-certifi==2019.3.9
-cffi==1.12.3
-cftime==1.0.3.4
-chardet==3.0.4
-cloudpickle==1.2.2
-coverage==4.5.2
-cycler==0.10.0
-decorator==4.4.1
-dill==0.3.0
-gast==0.3.2
-google-pasta==0.1.7
-graphviz==0.8.4
-grpcio==1.23.0
-h5py==2.9.0
-horovod==0.18.1
-idna==2.8
-imageio==2.6.1
-imbalanced-learn==0.5.0
-imblearn==0.0
-joblib==0.13.2
-Keras-Applications==1.0.8
-Keras-Preprocessing==1.1.0
-kiwisolver==1.1.0
-Markdown==3.1.1
-matplotlib==3.1.2
-mnist==0.2.2
-more-itertools==6.0.0
-mxnet==1.5.0
-netCDF4==1.5.1.2
-networkx==2.4
-nose==1.3.7
-numpy==1.16.2
-opencv-python==4.1.2.30
-pandas==0.24.1
-patsy==0.5.1
-Pillow==6.1.0
-pluggy==0.9.0
-protobuf==3.9.1
-psutil==5.6.1
-py==1.8.0
-pycparser==2.19
-pymongo==3.10.1
-pyparsing==2.4.5
-pytest==4.3.0
-pytest-cov==2.6.1
-python-dateutil==2.8.0
-pytz==2018.9
-PyWavelets==1.1.1
-PyYAML==5.1.2
-requests==2.21.0
-scikit-image==0.16.2
-scikit-learn==0.21.3
-scipy==1.3.1
-six==1.12.0
-sklearn==0.0
-statsmodels==0.9.0
-tensorboard==1.14.0
-tensorflow==1.14.0
-tensorflow-estimator==1.14.0
-termcolor==1.1.0
-tflearn==0.3.2
-torch==1.2.0
-torchvision==0.4.0
-tornado==6.0.1
-tqdm==4.36.1
-urllib3==1.24.1
-Werkzeug==0.15.6
-wrapt==1.11.2
--
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