From 7712083e6881d6f14b3eba7248cdd290dfac5624 Mon Sep 17 00:00:00 2001
From: Michael <m.langguth@fz-juelich.de>
Date: Sat, 27 Jun 2020 11:55:53 +0200
Subject: [PATCH] Sourcing modules.sh from Batch-script DataPreprocess.sh and
integrated check for activated virtual env.
---
video_prediction_savp/HPC_scripts/DataPreprocess.sh | 13 +++++--------
1 file changed, 5 insertions(+), 8 deletions(-)
diff --git a/video_prediction_savp/HPC_scripts/DataPreprocess.sh b/video_prediction_savp/HPC_scripts/DataPreprocess.sh
index bdd117d6..2293cc70 100755
--- a/video_prediction_savp/HPC_scripts/DataPreprocess.sh
+++ b/video_prediction_savp/HPC_scripts/DataPreprocess.sh
@@ -11,15 +11,12 @@
#SBATCH --mail-type=ALL
#SBATCH --mail-user=b.gong@fz-juelich.de
-module purge
-module use $OTHERSTAGES
-module load Stages/2019a
-module load Intel/2019.3.199-GCC-8.3.0 ParaStationMPI/5.2.2-1
-module load h5py/2.9.0-Python-3.6.8
-module load mpi4py/3.0.1-Python-3.6.8
-
-
+if [ -z ${VIRTUAL_ENV} ]; then
+ echo "Please activate a virtual environment..."
+ exit 1
+fi
+source ../env_setup/modules.sh
source_dir=/p/scratch/deepacf/video_prediction_shared_folder/extractedData
destination_dir=/p/scratch/deepacf/video_prediction_shared_folder/preprocessedData/era5-Y2015to2017M01to12
--
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