From f693b9988dcc47b64dadfb660c7a866228612c3d Mon Sep 17 00:00:00 2001
From: Bing Gong <gongbing1112@gmail.com>
Date: Mon, 16 Mar 2020 10:44:42 +0100
Subject: [PATCH] update env_setup
---
env_setup/create_env.sh | 25 +++++++++++++++++++++++++
env_setup/modules.sh | 2 +-
scripts/create_env.sh | 1 -
3 files changed, 26 insertions(+), 2 deletions(-)
create mode 100755 env_setup/create_env.sh
delete mode 100755 scripts/create_env.sh
diff --git a/env_setup/create_env.sh b/env_setup/create_env.sh
new file mode 100755
index 00000000..b766768f
--- /dev/null
+++ b/env_setup/create_env.sh
@@ -0,0 +1,25 @@
+#!/usr/bin/env bash
+
+if [[ ! -n "$1" ]]; then
+ echo "Provide the user name, which will be taken as folder name"
+ exit 1
+fi
+
+FOLDER_NAME=$1
+WORKING_DIR=/p/project/deepacf/deeprain/${FOLDER_NAME}/Video_Prediction_SAVP
+ENV_DIR=${WORKING_DIR}/env_setup
+
+source ${ENV_DIR}/modules.sh
+# Install additional Python packages.
+pip3 install --ignore-installed -r requirement.txt
+#pip3 install --user netCDF4
+#pip3 install --user numpy
+
+#Copy the hickle package from bing's account
+cd ENV_DIR
+cp -r /p/project/deepacf/deeprain/bing/hickle .
+export PYTHONPATH=${ENV_DIR}/hickle/lib/python3.6/site-packages:$PYTHONPATH
+export PYTHONPATH=${WORKING_DIR}:$PYTHONPATH
+export PYTHONPATH=/p/home/jusers/${USER}/juwels/.local/bin:$PYTHONPATH
+
+
diff --git a/env_setup/modules.sh b/env_setup/modules.sh
index 0a628b1b..a3231ded 100755
--- a/env_setup/modules.sh
+++ b/env_setup/modules.sh
@@ -1,7 +1,7 @@
#!/usr/bin/env bash
module --force purge
module /usr/local/software/jureca/OtherStages
-module load Stages/2019a
+module load Stages/2020
module load Intel/2019.3.199-GCC-8.3.0 ParaStationMPI/5.2.2-1
module load mpi4py/3.0.1-Python-3.6.8
diff --git a/scripts/create_env.sh b/scripts/create_env.sh
deleted file mode 100755
index 212c4ba2..00000000
--- a/scripts/create_env.sh
+++ /dev/null
@@ -1 +0,0 @@
-#!/usr/bin/env bash
\ No newline at end of file
--
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