From ff69d57be1b36edf12d99a0391a9f43bea2e2243 Mon Sep 17 00:00:00 2001
From: Bing Gong <gongbing1112@gmail.com>
Date: Mon, 23 Mar 2020 19:04:43 +0100
Subject: [PATCH] Fix #17

---
 HPC_scripts/DataPreprocess_to_tf.sh | 23 ++++++++++++++++++++++-
 1 file changed, 22 insertions(+), 1 deletion(-)

diff --git a/HPC_scripts/DataPreprocess_to_tf.sh b/HPC_scripts/DataPreprocess_to_tf.sh
index 212c4ba2..038eb7f0 100755
--- a/HPC_scripts/DataPreprocess_to_tf.sh
+++ b/HPC_scripts/DataPreprocess_to_tf.sh
@@ -1 +1,22 @@
-#!/usr/bin/env bash
\ No newline at end of file
+#!/bin/bash -x
+#SBATCH --account=deepacf
+#SBATCH --nodes=1
+#SBATCH --ntasks=12
+##SBATCH --ntasks-per-node=12
+#SBATCH --cpus-per-task=1
+#SBATCH --output=DataPreprocess_to_tf-out.%j
+#SBATCH --error=DataPreprocess_to_tf-err.%j
+#SBATCH --time=00:20:00
+#SBATCH --partition=devel
+#SBATCH --mail-type=ALL
+#SBATCH --mail-user=b.gong@fz-juelich.de
+
+module --force purge
+module use use $OTHERSTAGES
+module load Stages/2019a
+module load Intel/2019.3.199-GCC-8.3.0  ParaStationMPI/5.2.2-1
+module load h5py/2.9.0-Python-3.6.8
+module load mpi4py/3.0.1-Python-3.6.8
+
+srun python mpi_stager_v2_process_netCDF.py --source_dir /p/scratch/deepacf/video_prediction_shared_folder/extractedData/ \
+--destination_dir /p/scratch/deepacf/scarlet/processData_size_64_64_3_3t_norm
-- 
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