diff --git a/mlt_modules.sh b/mlt_modules.sh deleted file mode 100755 index d20b246d4f396363a23e68d64f89b6d3abaee8c4..0000000000000000000000000000000000000000 --- a/mlt_modules.sh +++ /dev/null @@ -1,21 +0,0 @@ -#!/bin/bash -# __author__ = Felix Kleinert -# __date__ = '2020-04-06' - -# This script loads the required modules for mlt which are available on JUWELS. -# Note that some other packages have to be installed into a venv (see setup_venv.sh). - -module --force purge -module use $OTHERSTAGES - -ml Stages/Devel-2019a -ml GCCcore/.8.3.0 - -ml Jupyter/2019a-Python-3.6.8 -ml Python/3.6.8 -ml TensorFlow/1.13.1-GPU-Python-3.6.8 -ml Keras/2.2.4-GPU-Python-3.6.8 -ml SciPy-Stack/2019a-Python-3.6.8 -ml dask/1.1.5-Python-3.6.8 -ml GEOS/3.7.1-Python-3.6.8 -ml Graphviz/2.40.1 \ No newline at end of file diff --git a/setup_venv.sh b/setup_venv.sh deleted file mode 100755 index 960ee0e01b460bcea567e4f76f34ed888174a448..0000000000000000000000000000000000000000 --- a/setup_venv.sh +++ /dev/null @@ -1,30 +0,0 @@ -#!/bin/bash -# __author__ = Felix Kleinert -# __date__ = '2020-04-06' - -# This script creates a virtual env which contains all modules which are not available via slrum/easybuild (see mlt_modules.sh) - -# load existing modules -source mlt_modules.sh - -# create venv -python3 -m venv venv - -source venv/bin/activate - -# export path for side-packages -export PYTHONPATH=${PWD}/venv/lib/python3.6/site-packages:${PYTHONPATH} - -pip install -r requirements_JUWELS_outcommented.txt -pip install --ignore-installed matplotlib==3.2.0 - -# Comment: Maybe we have to export PYTHONPATH a second time ater activating the venv (after job allocation) -# source venv/bin/activate -# alloc_develgpu -# source venv/bin/activate -# export PYTHONPATH=${PWD}/venv/lib/python3.6/site-packages:${PYTHONPATH} -# srun python run.py - -# create batch run scripts -source create_runscripts_HPC.sh -