diff --git a/HPC_setup/requirements_HDFML_additionals.txt b/HPC_setup/requirements_HDFML_additionals.txt index 5065149a3e1da7a197834bbf17d74281b815e732..82d78d096ba56157cf046c2e9e2064c3b68e421c 100644 --- a/HPC_setup/requirements_HDFML_additionals.txt +++ b/HPC_setup/requirements_HDFML_additionals.txt @@ -1,19 +1,60 @@ +absl-py==0.9.0 +astor==0.8.1 +atomicwrites==1.3.0 +attrs==19.3.0 +certifi==2019.11.28 +chardet==3.0.4 +cloudpickle==1.3.0 coverage==5.0.3 +cycler==0.10.0 +Cython==0.29.15 +dask==2.11.0 +fsspec==0.6.2 +gast==0.3.3 +grpcio==1.27.2 +h5py==2.10.0 +idna==2.8 importlib-metadata==1.5.0 -matplotlib==3.2.0 # in SciPy-Stack -netcdf4 -pandas==1.0.1 # in SciPy-Stack -patsy==0.5.1 # -py==1.8.1 # ? -pyproj==2.5.0 # in basemap -pyshp==2.1.0 # in basemap -pytest==5.3.5 # in python (but we need higher version) + +kiwisolver==1.1.0 +locket==0.2.0 +Markdown==3.2.1 +matplotlib==3.2.0 +mock==4.0.1 +more-itertools==8.2.0 +numpy==1.18.1 +packaging==20.3 +pandas==1.0.1 +partd==1.1.0 +patsy==0.5.1 +Pillow==7.0.0 +pluggy==0.13.1 +protobuf==3.11.3 +py==1.8.1 +pydot==1.4.1 +pyparsing==2.4.6 +pyproj==2.5.0 +pyshp==2.1.0 +pytest==5.3.5 pytest-cov==2.8.1 pytest-html==2.0.1 pytest-lazy-fixture==0.6.3 pytest-metadata==1.8.0 pytest-sugar -statsmodels==0.11.1 # (in jupyter, bit not oh hdfml) -xarray==0.15.0 # in SciPy-Stacki (v0.12.1, only) -zipp==3.1.0 +python-dateutil==2.8.1 +pytz==2019.3 +PyYAML==5.3 +requests==2.23.0 +scipy==1.4.1 +seaborn==0.10.0 +--no-binary shapely Shapely==1.7.0 +six==1.11.0 +statsmodels==0.11.1 tabulate +toolz==0.10.0 +typing-extensions +urllib3==1.25.8 +wcwidth==0.1.8 +Werkzeug==1.0.0 +xarray==0.15.0 +zipp==3.1.0 diff --git a/HPC_setup/setup_venv_hdfml.sh b/HPC_setup/setup_venv_hdfml.sh index 585e43b10ae2e807eeec8f1345dc65a915c31184..ad5b12763dc0065f925baad39e244b31b762ba96 100644 --- a/HPC_setup/setup_venv_hdfml.sh +++ b/HPC_setup/setup_venv_hdfml.sh @@ -29,12 +29,12 @@ pip install --ignore-installed matplotlib==3.2.0 pip install --ignore-installed pandas==1.0.1 pip install --ignore-installed statsmodels==0.11.1 pip install --ignore-installed tabulate - +pip install -U typing_extensions # see wiki on hdfml for information oh h5py: # https://gitlab.version.fz-juelich.de/haf/Wiki/-/wikis/HDF-ML%20System export CC=mpicc export HDF5_MPI="ON" pip install --no-binary=h5py h5py - +pip install --ignore-installed netcdf4==1.5.4