diff --git a/readme.md b/readme.md index 63d97c2a85dbda99fac61feb1cd3e9880b1e12d2..7fcbd83dd391d6cb01ab9820e27ca5e993bc7caf 100644 --- a/readme.md +++ b/readme.md @@ -1,16 +1,22 @@ -# Project: Analysing the performance of AlphaFold3 for RNA structure prediction +# Project: Analysing AlphaFold3 for RNA structure prediction +The goal of this project was to investigate how well Alphafold3 can predict the structure of RNAs that were not part of the training set. To do this, I focused on analyzing the RMSD, RMSD per residue, and structural motifs of the RNA structure predictions of a test set of new RNA structures deposited on PDB databank since 2023. + ## alphafold_structures Directory contains all structure predictions made with AlphaFold3 for different datasets and additionally the pdb files from the experimental structure deposited on PDB. + ## analysis Analysis directory contains all .ipynb evaluation files. + ## data_22 Output from NucleoSeeker for all RNA structures before 2022 from PDB. + ## data_23_24 Output from NucleoSeeker for all RNA structures from 2023 until October 2024 from PDB. + ## rna_only_23_24 Similar to data_23_24 but with additional filtering for RNA only. This directory contains only RNA that is deposited as isolated RNA structure in PDB. \ No newline at end of file