From cedf971ef9b9e84337cb43b4fd0801a73afbddd0 Mon Sep 17 00:00:00 2001
From: Pascal <pnieters@uos.de>
Date: Wed, 2 Sep 2020 13:47:49 +0200
Subject: [PATCH] Revert "small script to retro-fit map.csv to include RKI
data"
This reverts commit 73b980df1f243b8bcb96e2268bede681f14cbaa7.
---
src/add_rki_to_map.py | 34 ----------------------------------
1 file changed, 34 deletions(-)
delete mode 100644 src/add_rki_to_map.py
diff --git a/src/add_rki_to_map.py b/src/add_rki_to_map.py
deleted file mode 100644
index 4a6a113..0000000
--- a/src/add_rki_to_map.py
+++ /dev/null
@@ -1,34 +0,0 @@
-import os
-import pickle as pkl
-import pandas as pd
-
-data = pd.read_csv('../data/diseases/covid19.csv', sep=',', encoding='iso-8859-1', index_col=0)
-data.index = [pd.Timestamp(date) for date in data.index]
-
-with open('../data/counties/counties.pkl', 'rb') as f:
- counties = pkl.load(f)
-
-shared_assets = '/p/project/covid19dynstat/shared_assets/'
-figures = os.path.join(shared_assets, 'figures/')
-dates = next(os.walk(figures))[1]
-
-# errors if the RKI based csv is out of date with the available folders
-for date in dates:
- map_csv_path = os.path.join(figures, date, 'map.csv')
-
- map_rki = data.loc[date.replace('_', '-')].values.astype('float64')
- for (i, (key, _)) in enumerate(counties.items()):
- n_people = counties[key]['demographics'][('total', 2018)]
- map_rki[i] = map_rki[i] / n_people * 100000
-
- map_data = pd.read_csv(map_csv_path, index_col=0)
- map_data["newInf100k_RKI"] = list(map_rki)
-
-
-
-
-
-
-
-
-
--
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