From b0930251077f05232ad54f8fff5aa47a12a388c2 Mon Sep 17 00:00:00 2001
From: Jens Henrik Goebbert <j.goebbert@fz-juelich.de>
Date: Sat, 22 Mar 2025 09:27:09 +0100
Subject: [PATCH] update to software stage 2025
---
03-HowTos/Create_JupyterKernel_general.ipynb | 41 +++++++-------------
1 file changed, 13 insertions(+), 28 deletions(-)
diff --git a/03-HowTos/Create_JupyterKernel_general.ipynb b/03-HowTos/Create_JupyterKernel_general.ipynb
index 37a11c7..0d8e7fa 100644
--- a/03-HowTos/Create_JupyterKernel_general.ipynb
+++ b/03-HowTos/Create_JupyterKernel_general.ipynb
@@ -72,7 +72,7 @@
"outputs": [],
"source": [
"# INPUT NEEDED:\n",
- "KERNEL_NAME=${USER}_kernel\n",
+ "KERNEL_NAME=${USER}_kernel_2025new2\n",
"\n",
"export KERNEL_NAME=$(echo \"${KERNEL_NAME}\" | awk '{print tolower($0)}')\n",
"echo ${KERNEL_NAME} # double check"
@@ -161,9 +161,10 @@
"outputs": [],
"source": [
"module purge\n",
- "module load Stages/2024 # any stage can be used\n",
+ "module load Stages/2025 # any stage can be used\n",
"module load GCC\n",
- "module load Python # only Python is mandatory"
+ "module load Python # only Python is mandatory\n",
+ "module load jupyter-server # provides ipykernel"
]
},
{
@@ -223,41 +224,24 @@
"cell_type": "markdown",
"metadata": {},
"source": [
- "#### 1.4 - Install Python libraries required for communication with Jupyter"
+ "#### 1.4 - Install whatever else you need in your Python virtual environment (using pip)"
]
},
{
"cell_type": "code",
"execution_count": null,
- "metadata": {
- "scrolled": true
- },
+ "metadata": {},
"outputs": [],
"source": [
- "which pip\n",
"if [ -z \"${VIRTUAL_ENV}\" ]; then\n",
" echo \"ERROR: Virtual environment not successfully initialized.\"\n",
"else\n",
- " pip install ipykernel\n",
+ " echo \"Installing custom Python packages using pip from the virtual environment:\"\n",
+ " which pip\n",
+ " # pip install <python-package you need>\n",
"fi"
]
},
- {
- "cell_type": "markdown",
- "metadata": {},
- "source": [
- "#### 1.5 - Install whatever else you need in your Python virtual environment (using pip)"
- ]
- },
- {
- "cell_type": "code",
- "execution_count": null,
- "metadata": {},
- "outputs": [],
- "source": [
- "#pip install <python-package you need>"
- ]
- },
{
"cell_type": "markdown",
"metadata": {},
@@ -294,12 +278,13 @@
"\n",
"# Load basic Python module\n",
"module purge\n",
- "module load Stages/2024\n",
+ "module load Stages/2025\n",
"module load GCC\n",
"module load Python\n",
+ "module load jupyter-server # provides ipykernel\n",
"\n",
"# Load extra modules you need for your kernel (as you did in step 1.2)\n",
- "#module load <module you need>\n",
+ "# module load <module you need>\n",
"\n",
"# Activate your Python virtual environment\n",
"source ${VIRTUAL_ENV}/bin/activate\n",
@@ -307,7 +292,7 @@
"# Ensure python packages installed in the virtual environment are always prefered\n",
"export PYTHONPATH=${VIRTUAL_ENV}/lib/python${PYV}/site-packages:\"'${PYTHONPATH}'\"\n",
" \n",
- "exec python -m ipykernel \"'$@' > ${VIRTUAL_ENV}/kernel.sh\n",
+ "exec python -Xfrozen_modules=off -m ipykernel \"'$@' > ${VIRTUAL_ENV}/kernel.sh\n",
"chmod +x ${VIRTUAL_ENV}/kernel.sh\n",
"\n",
"cat ${VIRTUAL_ENV}/kernel.sh # double check"
--
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