From 87e5af5454dc505683d527e54af8832dea7f027f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jens=20Henrik=20G=C3=B6bbert?= <j.goebbert@fz-juelich.de>
Date: Mon, 2 Dec 2019 02:46:51 +0100
Subject: [PATCH] update sanity-check
---
SanityCheck.ipynb | 413 +++++++++++++++++++++++-----------------------
1 file changed, 208 insertions(+), 205 deletions(-)
diff --git a/SanityCheck.ipynb b/SanityCheck.ipynb
index 07d1954..be54abb 100644
--- a/SanityCheck.ipynb
+++ b/SanityCheck.ipynb
@@ -9,7 +9,7 @@
},
{
"cell_type": "code",
- "execution_count": 245,
+ "execution_count": 248,
"metadata": {},
"outputs": [],
"source": [
@@ -230,224 +230,225 @@
},
{
"cell_type": "code",
- "execution_count": 247,
+ "execution_count": 249,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
- "PYPI NAME : IMPORT NAME REQ.VERSION | INST.VERSION\n",
- "=======================================================================\n",
- "setuptools : setuptools 41.6.0 \n",
- "webencodings : webencodings 0.5.1 \n",
- "six : six 1.12.0 \n",
- "decorator : decorator 4.4.0 \n",
- "MarkupSafe : markupsafe 1.1.1 \n",
- "more-itertools : more_itertools 7.2.0 != \u001b[31m7.0.0\u001b[0m\n",
- "pickleshare : pickleshare 0.7.5 \n",
- "jedi : jedi 0.15.1 != \u001b[31m0.13.3\u001b[0m\n",
- "wcwidth : wcwidth 0.1.7 \n",
- "attr : attr 19.3.0 != \u001b[31m19.1.0\u001b[0m\n",
- "parso : parso 0.5.1 != \u001b[31m0.3.4\u001b[0m\n",
- "jinja2 : jinja2 2.10.1 != \u001b[31m2.10\u001b[0m\n",
- "pytz : pytz 2019.3 != \u001b[31m2019.1\u001b[0m\n",
- "pyparsing : pyparsing 2.2.0 != \u001b[31m2.3.1\u001b[0m\n",
- "packaging : packaging 19.2 != \u001b[31m19.0\u001b[0m\n",
- "urllib3 : urllib3 1.25.6 != \u001b[31m1.24.1\u001b[0m\n",
- "certifi : certifi 2019.9.11 != \u001b[31m2019.03.09\u001b[0m\n",
- "requests : requests 2.22.0 != \u001b[31m2.21.0\u001b[0m\n",
- "python-dateutil : dateutil 2.8.1 != \u001b[31m2.8.0\u001b[0m\n",
- "Pillow : PIL 6.2.1 != \u001b[31m6.0.0\u001b[0m\n",
- "ply : ply 3.11 \n",
- "pyrsistent : pyrsistent 0.15.4 != \u001b[31m0.14.11\u001b[0m\n",
- "lxml : lxml 4.4.1 != \u001b[31m4.3.3\u001b[0m\n",
- "idna : idna 2.8 \n",
- "chardet : chardet 3.0.4 \n",
- "pycparser : pycparser 2.19 \n",
- "cffi : cffi 1.13.2 != \u001b[31m1.12.2\u001b[0m\n",
- "psutil : psutil 5.6.3 != \u001b[31m5.6.1\u001b[0m\n",
- "SQLAlchemy : sqlalchemy 1.3.10 != \u001b[31m1.3.1\u001b[0m\n",
+ "PYPI NAME : IMPORT NAME REQ.VERS.|INST.VERS. IMPORT TIME\n",
+ "=================================================================================\n",
+ "setuptools : setuptools 41.6.0 0.000095s\n",
+ "webencodings : webencodings 0.5.1 0.000064s\n",
+ "six : six 1.12.0 0.000056s\n",
+ "decorator : decorator 4.4.0 0.000051s\n",
+ "MarkupSafe : markupsafe 1.1.1 0.000042s\n",
+ "more-itertools : more_itertools 7.2.0 != \u001b[31m7.0.0 \u001b[0m 0.000042s\n",
+ "pickleshare : pickleshare 0.7.5 0.000058s\n",
+ "jedi : jedi 0.15.1 != \u001b[31m0.13.3 \u001b[0m 0.000043s\n",
+ "wcwidth : wcwidth 0.1.7 0.000051s\n",
+ "attr : attr 19.3.0 != \u001b[31m19.1.0 \u001b[0m 0.000053s\n",
+ "parso : parso 0.5.1 != \u001b[31m0.3.4 \u001b[0m 0.000046s\n",
+ "jinja2 : jinja2 2.10.1 != \u001b[31m2.10 \u001b[0m 0.000051s\n",
+ "pytz : pytz 2019.3 != \u001b[31m2019.1 \u001b[0m 0.000073s\n",
+ "pyparsing : pyparsing 2.2.0 != \u001b[31m2.3.1 \u001b[0m 0.000049s\n",
+ "packaging : packaging 19.2 != \u001b[31m19.0 \u001b[0m 0.000041s\n",
+ "urllib3 : urllib3 1.25.6 != \u001b[31m1.24.1 \u001b[0m 0.000040s\n",
+ "certifi : certifi 2019.9.11 != \u001b[31m2019.03.09\u001b[0m 0.000041s\n",
+ "requests : requests 2.22.0 != \u001b[31m2.21.0 \u001b[0m 0.000042s\n",
+ "python-dateutil : dateutil 2.8.1 != \u001b[31m2.8.0 \u001b[0m 0.000041s\n",
+ "Pillow : PIL 6.2.1 != \u001b[31m6.0.0 \u001b[0m 0.000039s\n",
+ "ply : ply 3.11 0.000039s\n",
+ "pyrsistent : pyrsistent 0.15.4 != \u001b[31m0.14.11 \u001b[0m 0.000054s\n",
+ "lxml : lxml 4.4.1 != \u001b[31m4.3.3 \u001b[0m 0.000054s\n",
+ "idna : idna 2.8 0.000046s\n",
+ "chardet : chardet 3.0.4 0.000042s\n",
+ "pycparser : pycparser 2.19 0.000038s\n",
+ "cffi : cffi 1.13.2 != \u001b[31m1.12.2 \u001b[0m 0.000039s\n",
+ "psutil : psutil 5.6.3 != \u001b[31m5.6.1 \u001b[0m 0.000037s\n",
+ "SQLAlchemy : sqlalchemy 1.3.10 != \u001b[31m1.3.1 \u001b[0m 0.000038s\n",
"certipy : certipy \u001b[31mIMPORT FAILED\u001b[0m\n",
- "python-editor : editor 1.0.4 \n",
- "Mako : mako 1.1.0 != \u001b[31m1.0.8\u001b[0m\n",
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- "click : click 7.0 \n",
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- "prompt-toolkit : prompt_toolkit 2.0.10 != \u001b[31m2.0.9\u001b[0m\n",
+ "python-editor : editor 1.0.4 0.000059s\n",
+ "Mako : mako 1.1.0 != \u001b[31m1.0.8 \u001b[0m 0.000051s\n",
+ "alembic : alembic 1.2.1 != \u001b[31m1.0.8 \u001b[0m 0.000039s\n",
+ "click : click 7.0 0.000039s\n",
+ "appdirs : appdirs 1.4.3 0.000040s\n",
+ "cloudpickle : cloudpickle 1.2.2 != \u001b[31m0.8.1 \u001b[0m 0.000037s\n",
+ "toolz : toolz 0.10.0 != \u001b[31m0.9.0 \u001b[0m 0.000037s\n",
+ "cryptography : cryptography 2.8 != \u001b[31m2.6.1 \u001b[0m 0.000036s\n",
+ "prompt-toolkit : prompt_toolkit 2.0.10 != \u001b[31m2.0.9 \u001b[0m 0.000038s\n",
"oauthlib : oauthlib \u001b[31mIMPORT FAILED\u001b[0m\n",
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- "typed-ast : typed_ast 1.4.0 \n",
- "cycler : cycler 0.10.0 \n",
- "numpy : numpy 1.15.2 \n",
- "scipy : scipy 1.2.1 \n",
- "sympy : sympy 1.4 != \u001b[31m1.3\u001b[0m\n",
- "pandas : pandas 0.25.3 != \u001b[31m0.24.2\u001b[0m\n",
- "mpmath : mpmath 1.1.0 \n",
- "kiwisolver : kiwisolver 1.1.0 != \u001b[31m1.0.1\u001b[0m\n",
+ "async-generator : async_generator 1.10 0.000049s\n",
+ "smmap : smmap 0.9.0 != \u001b[31m2.0.5 \u001b[0m 0.000038s\n",
+ "typed-ast : typed_ast 1.4.0 0.000036s\n",
+ "cycler : cycler 0.10.0 0.000035s\n",
+ "numpy : numpy 1.15.2 0.000035s\n",
+ "scipy : scipy 1.2.1 0.000037s\n",
+ "sympy : sympy 1.4 != \u001b[31m1.3 \u001b[0m 0.000034s\n",
+ "pandas : pandas 0.25.3 != \u001b[31m0.24.2 \u001b[0m 0.000033s\n",
+ "mpmath : mpmath 1.1.0 0.000032s\n",
+ "kiwisolver : kiwisolver 1.1.0 != \u001b[31m1.0.1 \u001b[0m 0.000033s\n",
"backports.functools_lru_cache : backports.functools_lru_cache \u001b[31mIMPORT FAILED\u001b[0m\n",
- "matplotlib : matplotlib 3.1.1 != \u001b[31m3.0.3\u001b[0m\n",
- "xarray : xarray 0.11.3 != \u001b[31m0.12.1\u001b[0m\n",
- "pyOpenSSL : OpenSSL 19.0.0 \n",
- "entrypoints : entrypoints 0.3 \n",
- "async_generator : async_generator 1.10 \n",
- "absl-py : absl 0.8.1 \n",
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- "bokeh : bokeh 1.3.4 \n",
- "seaborn : seaborn 0.9.0 \n",
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- "pyviz_comms : pyviz_comms 0.7.2 \n",
- "holoviews : holoviews 1.12.6 \n",
- "alabaster : alabaster 0.7.12 \n",
- "Babel : babel 2.7.0 \n",
- "snowballstemmer : snowballstemmer 2.0.0 \n",
- "docutils : docutils 0.15.2 \n",
- "imagesize : imagesize 1.1.0 \n",
- "sphinxcontrib-websupport : sphinxcontrib.websupport 1.1.2 \n",
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- "pexpect : pexpect 4.7.0 \n",
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- "ipynb : ipynb 0.5.1 \n",
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- "ipykernel : ipykernel 5.1.3 \n",
- "terminado : terminado 0.8.2 \n",
- "bleach : bleach 3.1.0 \n",
- "mistune : mistune 0.8.4 \n",
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- "notebook : notebook 6.0.1 != \u001b[31m6.0.2\u001b[0m\n",
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- "voila-material : - 0.2.5 \n",
- "voila-gridstack : - 0.0.6 \n",
- "voila-vuetify : - 0.1.1 \n"
+ "matplotlib : matplotlib 3.1.1 != \u001b[31m3.0.3 \u001b[0m 0.000044s\n",
+ "xarray : xarray 0.11.3 != \u001b[31m0.12.1 \u001b[0m 0.000036s\n",
+ "pyOpenSSL : OpenSSL 19.0.0 0.000036s\n",
+ "entrypoints : entrypoints 0.3 0.000051s\n",
+ "async_generator : async_generator 1.10 0.000034s\n",
+ "absl-py : absl 0.8.1 0.000034s\n",
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+ "bokeh : bokeh 1.3.4 0.000038s\n",
+ "seaborn : seaborn 0.9.0 0.000032s\n",
+ "nbformat : nbformat 4.4.0 0.000033s\n",
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+ "snowballstemmer : snowballstemmer 2.0.0 0.000032s\n",
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+ "testpath : testpath 0.4.2 != \u001b[31m0.4.4 \u001b[0m 0.000030s\n",
+ "nbconvert : nbconvert 5.6.1 0.000029s\n",
+ "ipython_genutils : ipython_genutils 0.2.0 0.000028s\n",
+ "Send2Trash : send2trash 1.5.0 0.000029s\n",
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+ "version_information : version_information 1.0.3 0.000038s\n",
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+ "recommonmark : recommonmark 0.6.0 0.000030s\n",
+ "jupyterlab : jupyterlab 1.2.1 0.000027s\n",
+ "json5 : json5 0.8.5 0.000026s\n",
+ "jupyterlab_server : jupyterlab_server 1.0.6 0.000029s\n",
+ "ptyprocess : ptyprocess 0.6.0 0.000026s\n",
+ "defusedxml : defusedxml 0.6.0 0.000026s\n",
+ "widgetsnbextension : widgetsnbextension 3.5.1 0.000025s\n",
+ "ipywidgets : ipywidgets 7.5.1 0.000036s\n",
+ "ipydatawidgets : ipydatawidgets 4.0.1 0.000025s\n",
+ "traittypes : traittypes 0.2.1 0.000025s\n",
+ "bqplot : bqplot 0.11.9 0.000025s\n",
+ "pythreejs : pythreejs 2.1.1 0.000024s\n",
+ "PyWavelets : pywt 1.1.1 0.000029s\n",
+ "imageio : imageio 2.6.1 0.000025s\n",
+ "networkx : networkx 2.4 0.000026s\n",
+ "scikit-image : skimage 0.16.2 0.000026s\n",
+ "ipywebrtc : ipywebrtc 0.5.0 0.000025s\n",
+ "ipyvolume : ipyvolume 0.5.2 0.000025s\n",
+ "branca : branca 0.3.1 0.000025s\n",
+ "ipyleaflet : ipyleaflet 0.11.4 0.000025s\n",
+ "ipympl : ipympl 0.3.3 0.000026s\n",
+ "PyYAML : yaml 5.1.2 0.000031s\n",
+ "jupyter_nbextensions_configurator : jupyter_nbextensions_configurator 0.4.1 0.000026s\n",
+ "jupyter_latex_envs : latex_envs 1.4.6 != \u001b[31m1.4.0 \u001b[0m 0.000025s\n",
+ "jupyter_highlight_selected_word : jupyter_highlight_selected_word 0.2.0 0.000025s\n",
+ "jupyter_contrib_core : jupyter_contrib_core 0.3.3 0.000025s\n",
+ "jupyter_contrib_nbextensions : jupyter_contrib_nbextensions 0.5.1 0.000025s\n",
+ "rise : rise 5.5.1 0.000025s\n",
+ "typing-extensions : typing_extensions 3.7.4 0.000027s\n",
+ "idna-ssl : idna_ssl 1.1.0 0.000031s\n",
+ "multidict : multidict 4.5.2 0.000029s\n",
+ "yarl : yarl 1.3.0 0.000026s\n",
+ "async-timeout : async_timeout 3.0.1 0.000025s\n",
+ "aiohttp : aiohttp 3.6.2 0.000025s\n",
+ "simpervisor : simpervisor 0.3 0.000027s\n",
+ "jupyter_server : jupyter_server 0.1.1 0.000030s\n",
+ "jupyter-server-proxy : jupyter_server_proxy 1.1.0 0.000027s\n",
+ "jupyterlab_github : jupyterlab_github 1.0.0 0.000030s\n",
+ "jupyterlab-gitlab : jupyterlab_gitlab 0.2.0 0.000031s\n",
+ "jupyterlab-quickopen : jupyterlab_quickopen 0.3.0 0.000024s\n",
+ "zstandard : zstandard 0.12.0 0.000024s\n",
+ "pyct : pyct 0.4.6 0.000025s\n",
+ "colorcet : colorcet 2.0.2 != \u001b[31m1.0.0 \u001b[0m 0.000023s\n",
+ "ujson : ujson 1.35 0.000024s\n",
+ "jupyterlab_iframe : jupyterlab_iframe 0.2.1 0.000022s\n",
+ "python-dotenv : dotenv 0.10.3 0.000024s\n",
+ "jupyterlab_latex : jupyterlab_latex 1.0.0 0.000025s\n",
+ "jupyterlab_slurm : jupyterlab_slurm 1.0.5 0.000024s\n",
+ "jupyterlmod : jupyterlmod 1.7.5 0.000025s\n",
+ "nbresuse : nbresuse 0.3.2 0.000026s\n",
+ "colorama : colorama 0.4.1 0.000026s\n",
+ "nbdime : nbdime 1.1.0 0.000019s\n",
+ "smmap2 : smmap 2.0.5 0.000018s\n",
+ "gitdb2 : gitdb 2.0.6 0.000018s\n",
+ "GitPython : git 3.0.4 0.000018s\n",
+ "jupyterlab-git : jupyterlab_git 0.8.1 0.000019s\n",
+ "sidecar : sidecar 0.3.0 0.000025s\n",
+ "pycodestyle : pycodestyle 2.5.0 0.000020s\n",
+ "autopep8 : autopep8 1.4.4 0.000018s\n",
+ "yapf : yapf 0.28.0 0.000018s\n",
+ "toml : toml 0.10.0 0.000019s\n",
+ "pathspec : pathspec 0.6.0 0.000026s\n",
+ "typed_ast : typed_ast 1.4.0 0.000019s\n",
+ "regex : regex 2019.11.1 != \u001b[31m2.5.65 \u001b[0m 0.000018s\n",
+ "black : black 19.10b0 != \u001b[31m19.3b0 \u001b[0m 0.000018s\n",
+ "jupyterlab-code-formatter : jupyterlab_code_formatter 0.6.1 0.000019s\n",
+ "pamela : pamela 1.0.0 0.000021s\n",
+ "jupyterhub : jupyterhub 1.0.0 0.000019s\n",
+ "appmode : appmode 0.6.0 0.000018s\n",
+ "HeapDict : heapdict 1.0.1 0.000018s\n",
+ "zict : zict 1.0.0 0.000023s\n",
+ "tblib : tblib 1.5.0 0.000019s\n",
+ "sortedcontainers : sortedcontainers 2.1.0 0.000019s\n",
+ "msgpack : msgpack 0.6.2 0.000018s\n",
+ "dask : dask 2.6.0 0.000022s\n",
+ "distributed : distributed 2.6.0 0.000019s\n",
+ "dask_labextension : dask_labextension 1.0.3 0.000018s\n",
+ "Automat : automat 0.8.0 0.000019s\n",
+ "PyHamcrest : hamcrest 1.9.0 0.000022s\n",
+ "Twisted : twisted 19.7.0 0.000022s\n",
+ "autobahn : autobahn 19.10.1 0.000020s\n",
+ "constantly : constantly 15.1.0 0.000018s\n",
+ "hyperlink : hyperlink 19.0.0 0.000018s\n",
+ "incremental : incremental 17.5.0 0.000021s\n",
+ "txaio : txaio 18.8.1 0.000021s\n",
+ "zope.interface : zope.interface 4.6.0 0.000019s\n",
+ "backcall : backcall 0.1.0 0.000020s\n",
+ "wslink : wslink 0.1.11 0.000019s\n",
+ "jupyterlab_pygments : jupyterlab_pygments 0.1.0 0.000018s\n",
+ "ipyvue : ipyvue 1.0.0 0.000018s\n",
+ "ipyvuetify : ipyvuetify 1.1.1 0.000018s\n",
+ "voila : voila 0.1.14 0.000018s\n",
+ "voila-material : - 0.2.5 0.000000s\n",
+ "voila-gridstack : - 0.0.6 0.000000s\n",
+ "voila-vuetify : - 0.1.1 0.000000s\n"
]
}
],
"source": [
"import importlib\n",
"from colorama import Fore, Style\n",
+ "from timeit import default_timer as timer\n",
"\n",
- "print(\"PYPI NAME\".ljust(20), \": \", \"IMPORT NAME\".ljust(20) + \"REQ.VERSION | INST.VERSION\")\n",
- "print(\"=======================================================================\")\n",
+ "print(\"PYPI NAME\".ljust(20), \": \", \"IMPORT NAME\".ljust(20) + \"REQ.VERS.|INST.VERS.\".ljust(25) + \"IMPORT TIME\")\n",
+ "print(\"=================================================================================\")\n",
"for pkg_name, pkg_version, pkg_importname in pkg_list:\n",
" if not pkg_importname:\n",
" pkg_importname = pkg_name\n",
@@ -455,8 +456,10 @@
" \n",
" try:\n",
" # import package\n",
+ " start_time = timer()\n",
" if pkg_importname != \"-\":\n",
" pkg = importlib.import_module(pkg_importname)\n",
+ " import_time = timer() - start_time\n",
" \n",
" # get version\n",
" try:\n",
@@ -467,9 +470,9 @@
" version = get_version(pkg_name)\n",
" \n",
" if version != pkg_version:\n",
- " version = pkg_version.ljust(10) + \" != \" + f\"{Fore.RED}\" + version + f\"{Style.RESET_ALL}\"\n",
+ " version = pkg_version.ljust(10) + \" != \" + f\"{Fore.RED}\" + version.ljust(10) + f\"{Style.RESET_ALL}\"\n",
"\n",
- " print(pkg_name.ljust(20), \": \", pkg_importname.ljust(20), version.ljust(10))\n",
+ " print(pkg_name.ljust(20), \": \", pkg_importname.ljust(20), version.ljust(24), f\"{import_time:.6f}\"+\"s\")\n",
" except:\n",
" print(pkg_name.ljust(20), \": \", pkg_importname.ljust(20), f\"{Fore.RED}IMPORT FAILED{Style.RESET_ALL}\") \n",
" \n",
--
GitLab