From c4949eb8bfa6ac663dd0cebd9d47b60d1215fddb Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jens=20Henrik=20G=C3=B6bbert?= <j.goebbert@fz-juelich.de>
Date: Mon, 6 Jan 2020 16:31:21 +0100
Subject: [PATCH] list pypackages
---
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1 file changed, 640 insertions(+)
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+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## List of included Python packages\n",
+ "\n",
+ "This lists the python packages available and installed by the install script for Python, SciPy-Stack and Jupyter:\n",
+ " - `$EBROOTPYTHON/easybuild/*.eb`\n",
+ " - `$EBROOTSCIPYMINSTACK/easybuild/*.eb`\n",
+ " - `$EBROOTJUPYTER/easybuild/*.eb`\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 7,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "pkg_list = [\n",
+ " # Python module\n",
+ " (\"setuptools\", \"41.6.0\", \"\"),\n",
+ " (\"webencodings\", \"0.5.1\", \"\"),\n",
+ " (\"six\", \"1.12.0\", \"\"),\n",
+ " (\"decorator\", \"4.4.0\", \"\"),\n",
+ " (\"MarkupSafe\", \"1.1.1\", \"markupsafe\"),\n",
+ " (\"more-itertools\", \"7.2.0\", \"more_itertools\"),\n",
+ " (\"pickleshare\", \"0.7.5\", \"\"),\n",
+ " (\"jedi\", \"0.15.1\", \"\"),\n",
+ " (\"wcwidth\", \"0.1.7\", \"\"),\n",
+ " (\"attr\", \"19.3.0\", \"\"),\n",
+ " (\"parso\", \"0.5.1\", \"\"),\n",
+ " (\"jinja2\", \"2.10.1\", \"\"),\n",
+ " (\"pytz\", \"2019.3\", \"\"),\n",
+ " (\"pyparsing\", \"2.2.0\", \"\"),\n",
+ " (\"packaging\", \"19.2\", \"\"),\n",
+ " (\"urllib3\", \"1.25.6\", \"\"),\n",
+ " (\"certifi\", \"2019.9.11\", \"\"),\n",
+ " (\"requests\", \"2.22.0\", \"\"),\n",
+ " (\"python-dateutil\", \"2.8.1\", \"dateutil\"),\n",
+ " (\"Pillow\", \"6.2.1\", \"PIL\"),\n",
+ " (\"ply\", \"3.11\", \"\"),\n",
+ " (\"pyrsistent\", \"0.15.4\", \"\"),\n",
+ " (\"lxml\", \"4.4.1\", \"\"),\n",
+ " (\"idna\", \"2.8\", \"\"),\n",
+ " (\"chardet\", \"3.0.4\", \"\"),\n",
+ " (\"pycparser\", \"2.19\", \"\"),\n",
+ " (\"cffi\", \"1.13.2\", \"\"),\n",
+ " (\"psutil\", \"5.6.3\", \"\"),\n",
+ " (\"SQLAlchemy\", \"1.3.10\", \"sqlalchemy\"),\n",
+ " (\"certipy\", \"0.1.3\", \"\"),\n",
+ " (\"python-editor\", \"1.0.4\", \"editor\"),\n",
+ " (\"Mako\", \"1.1.0\", \"mako\"),\n",
+ " (\"alembic\", \"1.2.1\", \"\"),\n",
+ " (\"click\", \"7.0\", \"\"),\n",
+ " (\"appdirs\", \"1.4.3\", \"\"),\n",
+ " (\"cloudpickle\", \"1.2.2\", \"\"),\n",
+ " (\"toolz\", \"0.10.0\", \"\"),\n",
+ " (\"cryptography\", \"2.8\", \"\"),\n",
+ " \n",
+ " (\"prompt-toolkit\", \"2.0.10\", \"prompt_toolkit\"),\n",
+ " (\"oauthlib\", \"3.1.0\", \"\"),\n",
+ " (\"async-generator\", \"1.10\", \"async_generator\"),\n",
+ " (\"smmap\", \"0.9.0\", \"\"),\n",
+ " (\"typed-ast\", \"1.4.0\", \"typed_ast\"),\n",
+ "\n",
+ " # SciPy-Stack module\n",
+ " (\"cycler\", \"0.10.0\", \"\"),\n",
+ " (\"numpy\", \"1.15.2\", \"\"),\n",
+ " (\"scipy\", \"1.2.1\", \"\"),\n",
+ " (\"sympy\", \"1.4\", \"\"),\n",
+ " (\"pandas\", \"0.25.3\", \"\"),\n",
+ " (\"mpmath\", \"1.1.0\", \"\"),\n",
+ " (\"kiwisolver\", \"1.1.0\", \"\"),\n",
+ " (\"backports.functools_lru_cache\", \"1.5\", \"\"),\n",
+ " (\"matplotlib\", \"3.1.1\", \"\"),\n",
+ " (\"xarray\", \"0.11.3\", \"\"),\n",
+ " \n",
+ " # Jupyter module\n",
+ " (\"pyOpenSSL\", \"19.0.0\", \"OpenSSL\"),\n",
+ " (\"entrypoints\", \"0.3\", \"\"),\n",
+ " (\"async_generator\", \"1.10\", \"\"),\n",
+ " (\"absl-py\", \"0.8.1\", \"absl\"),\n",
+ " (\"cryptography\", \"2.8\", \"\"),\n",
+ " (\"tornado\", \"6.0.3\", \"\"),\n",
+ " (\"bokeh\", \"1.3.4\", \"\"),\n",
+ " (\"seaborn\", \"0.9.0\", \"\"),\n",
+ " (\"nbformat\", \"4.4.0\", \"\"),\n",
+ " (\"param\", \"1.9.2\", \"\"),\n",
+ " (\"pyviz_comms\", \"0.7.2\", \"\"),\n",
+ " (\"holoviews\", \"1.12.6\", \"\"),\n",
+ " (\"alabaster\", \"0.7.12\", \"\"),\n",
+ " (\"Babel\", \"2.7.0\", \"babel\"),\n",
+ " (\"snowballstemmer\", \"2.0.0\", \"\"),\n",
+ " (\"docutils\", \"0.15.2\", \"\"),\n",
+ " (\"imagesize\", \"1.1.0\", \"\"),\n",
+ " (\"sphinxcontrib-websupport\", \"1.1.2\", \"sphinxcontrib.websupport\"),\n",
+ " (\"Sphinx\", \"1.8.5\", \"sphinx\"),\n",
+ " (\"pexpect\", \"4.7.0\", \"\"),\n",
+ " (\"ipython\", \"7.9.0\", \"IPython\"),\n",
+ " (\"ipynb\", \"0.5.1\", \"\"),\n",
+ " (\"jupyter_core\", \"4.6.1\", \"\"),\n",
+ " (\"retrying\", \"1.3.3\", \"\"),\n",
+ " (\"plotly\", \"4.2.1\", \"\"),\n",
+ " (\"tikzplotlib\", \"0.8.4\", \"\"),\n",
+ " (\"jupyter_client\", \"5.3.4\", \"\"),\n",
+ " (\"traitlets\", \"4.3.3\", \"\"),\n",
+ " (\"pyzmq\", \"18.1.0\", \"zmq\"),\n",
+ " (\"singledispatch\", \"3.4.0.3\", \"\"),\n",
+ " (\"ipyparallel\", \"6.2.4\", \"\"),\n",
+ " (\"ipykernel\", \"5.1.3\", \"\"),\n",
+ " (\"terminado\", \"0.8.2\", \"\"),\n",
+ " (\"bleach\", \"3.1.0\", \"\"),\n",
+ " (\"mistune\", \"0.8.4\", \"\"),\n",
+ " (\"pandocfilters\", \"1.4.2\", \"\"),\n",
+ " (\"Pygments\", \"2.4.2\", \"pygments\"),\n",
+ " (\"testpath\", \"0.4.4\", \"\"),\n",
+ " (\"nbconvert\", \"5.6.1\", \"\"),\n",
+ " (\"ipython_genutils\",\"0.2.0\", \"\"),\n",
+ " (\"Send2Trash\", \"1.5.0\", \"send2trash\"),\n",
+ " (\"notebook\", \"6.0.2\", \"\"),\n",
+ " (\"version_information\", \"1.0.3\", \"\"),\n",
+ " (\"lesscpy\", \"0.13.0\", \"\"),\n",
+ " (\"prometheus-client\", \"0.7.1\", \"prometheus_client\"),\n",
+ " (\"jupyterthemes\", \"0.20.0\", \"\"),\n",
+ " (\"zipp\", \"0.6.0\", \"\"),\n",
+ " (\"importlib_metadata\", \"0.23\", \"\"),\n",
+ " (\"jsonschema\", \"3.1.1\", \"\"),\n",
+ " (\"jupyterlab_launcher\", \"0.13.1\",\"\"),\n",
+ " (\"sphinx_rtd_theme\",\"0.4.3\", \"\"),\n",
+ " (\"future\", \"0.18.1\", \"\"),\n",
+ " (\"commonmark\", \"0.9.1\", \"\"),\n",
+ " (\"recommonmark\", \"0.6.0\", \"\"),\n",
+ " (\"jupyterlab\", \"1.2.1\", \"\"),\n",
+ " (\"json5\", \"0.8.5\", \"\"),\n",
+ " (\"jupyterlab_server\", \"1.0.6\", \"\"),\n",
+ " (\"ptyprocess\", \"0.6.0\", \"\"),\n",
+ " (\"defusedxml\", \"0.6.0\", \"\"),\n",
+ " (\"widgetsnbextension\", \"3.5.1\", \"\"),\n",
+ " (\"ipywidgets\", \"7.5.1\", \"\"),\n",
+ " (\"ipydatawidgets\", \"4.0.1\", \"\"),\n",
+ " (\"traittypes\", \"0.2.1\", \"\"),\n",
+ " (\"bqplot\", \"0.11.9\", \"\"),\n",
+ " (\"jupyter_bokeh\", \"1.1.1\", \"\"),\n",
+ " (\"pythreejs\", \"2.1.1\", \"\"),\n",
+ " (\"PyWavelets\", \"1.1.1\", \"pywt\"),\n",
+ " (\"imageio\", \"2.6.1\", \"\"),\n",
+ " (\"networkx\", \"2.3\", \"\"),\n",
+ " (\"scikit-image\", \"0.16.2\", \"skimage\"),\n",
+ " (\"ipywebrtc\", \"0.5.0\", \"\"),\n",
+ " (\"ipyvolume\", \"0.5.2\", \"\"),\n",
+ " (\"branca\", \"0.3.1\", \"\"),\n",
+ " (\"ipyleaflet\", \"0.11.4\", \"\"),\n",
+ " (\"ipympl\", \"0.3.3\", \"\"),\n",
+ " (\"PyYAML\", \"5.1.2\", \"yaml\"),\n",
+ " (\"jupyter_nbextensions_configurator\", \"0.4.1\", \"\"),\n",
+ " (\"jupyter_latex_envs\", \"1.4.6\", \"latex_envs\"),\n",
+ " (\"jupyter_highlight_selected_word\", \"0.2.0\", \"\"),\n",
+ " (\"jupyter_contrib_core\", \"0.3.3\",\"\"),\n",
+ " (\"jupyter_contrib_nbextensions\", \"0.5.1\", \"\"),\n",
+ " (\"rise\", \"5.5.1\", \"\"),\n",
+ " (\"typing-extensions\", \"3.7.4\", \"typing_extensions\"),\n",
+ " (\"idna-ssl\", \"1.1.0\", \"idna_ssl\"),\n",
+ " (\"multidict\", \"4.5.2\", \"\"),\n",
+ " (\"yarl\", \"1.3.0\", \"\"),\n",
+ " (\"async-timeout\", \"3.0.1\", \"async_timeout\"),\n",
+ " (\"aiohttp\", \"3.6.2\", \"\"),\n",
+ " (\"simpervisor\", \"0.3\", \"\"),\n",
+ " (\"jupyter_server\", \"0.1.1\", \"\"),\n",
+ " (\"jupyter-server-proxy\", \"1.1.0\", \"jupyter_server_proxy\"),\n",
+ " (\"jupyterlab_github\", \"1.0.1\", \"\"),\n",
+ " (\"jupyterlab-gitlab\", \"0.3.0\", \"jupyterlab_gitlab\"),\n",
+ " (\"jupyterlab-quickopen\", \"0.3.0\", \"jupyterlab_quickopen\"),\n",
+ " (\"zstandard\", \"0.12.0\", \"\"),\n",
+ " (\"itk_core\", \"5.0.1\", \"\"),\n",
+ " (\"itk_filtering\", \"5.0.1\", \"\"),\n",
+ " (\"itk_segmentation\",\"5.0.1\", \"\"),\n",
+ " (\"itk_numerics\", \"5.0.1\", \"\"),\n",
+ " (\"itk_registration\",\"5.0.1\", \"\"),\n",
+ " (\"itk_io\", \"5.0.1\", \"\"),\n",
+ " (\"itk-meshtopolydata\", \"0.5.1\", \"\"),\n",
+ " (\"pyct\", \"0.4.6\", \"\"),\n",
+ " (\"colorcet\", \"2.0.2\", \"\"),\n",
+ " (\"itkwidgets\", \"0.22.0\", \"\"),\n",
+ " (\"ujson\", \"1.35\", \"\"),\n",
+ " (\"jupyterlab_iframe\", \"0.2.1\", \"\"),\n",
+ " (\"python-dotenv\", \"0.10.3\", \"dotenv\"),\n",
+ " (\"jupyterlab_latex\",\"1.0.0\", \"\"),\n",
+ " (\"jupyterlab_slurm\",\"1.0.5\", \"\"),\n",
+ " (\"jupyterlmod\", \"1.7.5\", \"\"),\n",
+ " (\"nbresuse\", \"0.3.2\", \"\"),\n",
+ " (\"colorama\", \"0.4.1\", \"\"),\n",
+ " (\"nbdime\", \"1.1.0\", \"\"),\n",
+ " (\"smmap2\", \"2.0.5\", \"smmap\"),\n",
+ " (\"gitdb2\", \"2.0.6\", \"gitdb\"),\n",
+ " (\"GitPython\", \"3.0.4\", \"git\"),\n",
+ " (\"jupyterlab-git\", \"0.8.1\", \"jupyterlab_git\"),\n",
+ " (\"sidecar\", \"0.3.0\", \"\"),\n",
+ " (\"pycodestyle\", \"2.5.0\", \"\"),\n",
+ " (\"autopep8\", \"1.4.4\", \"\"),\n",
+ " (\"yapf\", \"0.28.0\", \"\"),\n",
+ " (\"toml\", \"0.10.0\", \"\"),\n",
+ " (\"pathspec\", \"0.6.0\", \"\"),\n",
+ " (\"typed_ast\", \"1.4.0\", \"\"),\n",
+ " (\"regex\", \"2019.11.1\",\"\"),\n",
+ " (\"black\", \"19.3b0\", \"\"),\n",
+ " (\"jupyterlab-code-formatter\", \"0.6.1\", \"jupyterlab_code_formatter\"),\n",
+ " (\"pamela\", \"1.0.0\", \"\"),\n",
+ " (\"certipy\", \"0.1.3\", \"\"),\n",
+ " (\"oauthlib\", \"3.1.0\", \"\"),\n",
+ " (\"jupyterhub\", \"1.0.0\", \"\"),\n",
+ " (\"appmode\", \"0.6.0\", \"\"),\n",
+ " (\"HeapDict\", \"1.0.1\", \"heapdict\"),\n",
+ " (\"zict\", \"1.0.0\", \"\"),\n",
+ " (\"tblib\", \"1.5.0\", \"\"),\n",
+ " (\"sortedcontainers\",\"2.1.0\", \"\"),\n",
+ " (\"msgpack\", \"0.6.2\", \"\"),\n",
+ " (\"dask\", \"2.6.0\", \"\"),\n",
+ " (\"distributed\", \"2.6.0\", \"\"),\n",
+ " (\"dask-jobqueue\", \"0.7.0\", \"\"),\n",
+ " (\"dask_labextension\", \"1.0.3\", \"\"),\n",
+ " (\"Automat\", \"0.8.0\", \"automat\"),\n",
+ " (\"PyHamcrest\", \"1.9.0\", \"hamcrest\"),\n",
+ " (\"Twisted\", \"19.7.0\", \"twisted\"),\n",
+ " (\"autobahn\", \"19.10.1\", \"\"),\n",
+ " (\"constantly\", \"15.1.0\", \"\"),\n",
+ " (\"hyperlink\", \"19.0.0\", \"\"),\n",
+ " (\"incremental\", \"17.5.0\", \"\"),\n",
+ " (\"txaio\", \"18.8.1\", \"\"),\n",
+ " (\"zope.interface\", \"4.6.0\", \"\"),\n",
+ " (\"backcall\", \"0.1.0\", \"\"),\n",
+ " (\"wslink\", \"0.1.11\", \"\"),\n",
+ " (\"jupyterlab_pygments\", \"0.1.0\",\"\"),\n",
+ " (\"ipyvue\", \"1.0.0\", \"\"),\n",
+ " (\"ipyvuetify\", \"1.1.1\", \"\"),\n",
+ " (\"voila\", \"0.1.14\", \"\"),\n",
+ " (\"voila-material\", \"0.2.5\", \"-\"),\n",
+ " (\"voila-gridstack\", \"0.0.6\", \"-\"),\n",
+ " (\"voila-vuetify\", \"0.1.1\", \"-\"), \n",
+ " (\"dicom-upload\", \"v0.1.0\", \"\"),\n",
+ " (\"fileupload\", \"master\", \"\"),\n",
+ " (\"pvlink\", \"0.1.2\", \"\"),\n",
+ " (\"julia\", \"0.5.0\", \"\"),\n",
+ " (\"textwrap3\", \"0.9.2\", \"\"),\n",
+ " (\"ansiwrap\", \"0.8.4\", \"\"),\n",
+ " (\"backports.weakref\",\"1.0.post1\",\"\"),\n",
+ " (\"backports.tempfile\",\"1.0\", \"\"),\n",
+ " (\"tqdm\", \"4.41.0\", \"\"),\n",
+ " (\"tenacity\", \"6.0.0\", \"\"),\n",
+ " (\"papermill\", \"1.2.1\", \"\"),\n",
+ " \n",
+ " # PythonPackages for Tutorials\n",
+ " (\"patsy\", \"0.5.1\", \"\"),\n",
+ " (\"statsmodels\", \"0.10.2\", \"\"),\n",
+ " (\"cftime\", \"1.0.4.2\", \"\"),\n",
+ " (\"vega_datasets\", \"0.8.0\", \"\"),\n",
+ " (\"arviz\", \"0.5.1\", \"\"),\n",
+ " (\"Theano\", \"1.0.4\", \"\"),\n",
+ " (\"altair\", \"3.3.0\", \"\"),\n",
+ " (\"cssselect\", \"1.1.0\", \"\"),\n",
+ " (\"smopy\", \"0.0.7\", \"\"),\n",
+ " (\"joblib\", \"0.14.1\", \"\"),\n",
+ " (\"scikit-learn\", \"0.22\", \"\"),\n",
+ " (\"memory_profiler\", \"0.55.0\", \"\"),\n",
+ " (\"h5py\", \"2.10.0\", \"\"),\n",
+ " (\"line_profiler\", \"2.1.2\", \"\"),\n",
+ " (\"pymc3\", \"3.8\", \"\"),\n",
+ " (\"llvmlite\", \"0.30.0\", \"\"),\n",
+ " (\"numba\", \"0.46.0\", \"\"),\n",
+ " (\"numexpr\", \"2.7.0\", \"\"),\n",
+ " (\"ipythonblocks\", \"1.9.0\", \"\"),\n",
+ " (\"pydub\", \"0.23.1\", \"\"),\n",
+ " (\"multipledispatch\",\"0.6.0\", \"\"),\n",
+ " (\"partd\", \"1.1.0\", \"\"),\n",
+ " (\"locket\", \"0.2.0\", \"\"),\n",
+ " (\"fsspec\", \"0.6.2\", \"\"),\n",
+ " (\"datashape\", \"0.5.2\", \"\"),\n",
+ " (\"datashader\", \"0.9.0\", \"\"),\n",
+ " (\"selenium\", \"3.141.0\", \"\"),\n",
+ " (\"graphviz\", \"0.13.2\", \"\"),\n",
+ " (\"vincent\", \"0.4.4\", \"\"),\n",
+ " (\"Shapely\", \"1.6.4.post2\",\"\"),\n",
+ " (\"pyshp\", \"2.1.0\", \"\"),\n",
+ " (\"Cartopy\", \"0.17.0\", \"\"),\n",
+ " (\"pandas-datareader\",\"0.8.1\", \"\"),\n",
+ "]\n",
+ "\n",
+ "from pip._vendor import pkg_resources\n",
+ "def get_version(package):\n",
+ " package = package.lower()\n",
+ " return next((p.version for p in pkg_resources.working_set if p.project_name.lower() == package), f\"{Fore.RED}NO MATCH{Style.RESET_ALL}\")"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Run a Sanity Check\n",
+ "A test of the Python packages follows here. \n",
+ "\n",
+ "Attention:\n",
+ " - Slight changes in the version numbers are due to compatibility problems we encountered and therefore had to make adjustments.\n",
+ " - \"NO MATCH\" - Not all package versions can be automatically found by this script\n",
+ " - \"IMPORT FAILED\" - Import failures are possible if python packages are not ment to be importable by the developer."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 11,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "PYPI NAME : IMPORT NAME REQ.VERS.|INST.VERS. IMPORT TIME\n",
+ "=================================================================================\n",
+ "setuptools : setuptools 41.6.0 0.000092s\n",
+ "webencodings : webencodings 0.5.1 0.000071s\n",
+ "six : six 1.12.0 0.000067s\n",
+ "decorator : decorator 4.4.0 0.000055s\n",
+ "MarkupSafe : markupsafe 1.1.1 0.000061s\n",
+ "more-itertools : more_itertools 7.2.0 != \u001b[31m7.0.0 \u001b[0m 0.000046s\n",
+ "pickleshare : pickleshare 0.7.5 0.000057s\n",
+ "jedi : jedi 0.15.1 != \u001b[31m0.13.3 \u001b[0m 0.000048s\n",
+ "wcwidth : wcwidth 0.1.7 0.000045s\n",
+ "attr : attr 19.3.0 != \u001b[31m19.1.0 \u001b[0m 0.000060s\n",
+ "parso : parso 0.5.1 != \u001b[31m0.3.4 \u001b[0m 0.000064s\n",
+ "jinja2 : jinja2 2.10.1 != \u001b[31m2.10 \u001b[0m 0.000049s\n",
+ "pytz : pytz 2019.3 != \u001b[31m2019.1 \u001b[0m 0.000061s\n",
+ "pyparsing : pyparsing 2.2.0 != \u001b[31m2.3.1 \u001b[0m 0.000052s\n",
+ "packaging : packaging 19.2 != \u001b[31m19.0 \u001b[0m 0.000049s\n",
+ "urllib3 : urllib3 1.25.6 != \u001b[31m1.24.1 \u001b[0m 0.000047s\n",
+ "certifi : certifi 2019.9.11 != \u001b[31m2019.03.09\u001b[0m 0.000099s\n",
+ "requests : requests 2.22.0 != \u001b[31m2.21.0 \u001b[0m 0.000056s\n",
+ "python-dateutil : dateutil 2.8.1 != \u001b[31m2.8.0 \u001b[0m 0.000066s\n",
+ "Pillow : PIL 6.2.1 != \u001b[31m6.0.0 \u001b[0m 0.000054s\n",
+ "ply : ply 3.11 0.000041s\n",
+ "pyrsistent : pyrsistent 0.15.4 != \u001b[31m0.14.11 \u001b[0m 0.000038s\n",
+ "lxml : lxml 4.4.1 != \u001b[31m4.3.3 \u001b[0m 0.000054s\n",
+ "idna : idna 2.8 0.000048s\n",
+ "chardet : chardet 3.0.4 0.000054s\n",
+ "pycparser : pycparser 2.19 0.000040s\n",
+ "cffi : cffi 1.13.2 != \u001b[31m1.12.2 \u001b[0m 0.000061s\n",
+ "psutil : psutil 5.6.3 != \u001b[31m5.6.1 \u001b[0m 0.000046s\n",
+ "SQLAlchemy : sqlalchemy 1.3.10 != \u001b[31m1.3.1 \u001b[0m 0.000043s\n",
+ "certipy : certipy 0.1.3 0.000056s\n",
+ "python-editor : editor 1.0.4 0.000057s\n",
+ "Mako : mako 1.1.0 != \u001b[31m1.0.8 \u001b[0m 0.000039s\n",
+ "alembic : alembic 1.2.1 != \u001b[31m1.0.8 \u001b[0m 0.000037s\n",
+ "click : click 7.0 0.000034s\n",
+ "appdirs : appdirs 1.4.3 0.000034s\n",
+ "cloudpickle : cloudpickle 1.2.2 != \u001b[31m0.8.1 \u001b[0m 0.000037s\n",
+ "toolz : toolz 0.10.0 != \u001b[31m0.9.0 \u001b[0m 0.000048s\n",
+ "cryptography : cryptography 2.8 0.000037s\n",
+ "prompt-toolkit : prompt_toolkit 2.0.10 != \u001b[31m2.0.9 \u001b[0m 0.000045s\n",
+ "oauthlib : oauthlib 3.1.0 0.000035s\n",
+ "async-generator : async_generator 1.10 0.000036s\n",
+ "smmap : smmap 0.9.0 != \u001b[31m2.0.5 \u001b[0m 0.000032s\n",
+ "typed-ast : typed_ast 1.4.0 0.000046s\n",
+ "cycler : cycler 0.10.0 0.000033s\n",
+ "numpy : numpy 1.15.2 0.000033s\n",
+ "scipy : scipy 1.2.1 0.000032s\n",
+ "sympy : sympy 1.4 != \u001b[31m1.3 \u001b[0m 0.000034s\n",
+ "pandas : pandas 0.25.3 != \u001b[31m0.24.2 \u001b[0m 0.000034s\n",
+ "mpmath : mpmath 1.1.0 0.000033s\n",
+ "kiwisolver : kiwisolver 1.1.0 != \u001b[31m1.0.1 \u001b[0m 0.000051s\n",
+ "matplotlib : matplotlib 3.1.1 != \u001b[31m3.0.3 \u001b[0m 0.000037s\n",
+ "xarray : xarray 0.11.3 != \u001b[31m0.12.1 \u001b[0m 0.000033s\n",
+ "pyOpenSSL : OpenSSL 19.0.0 0.000033s\n",
+ "entrypoints : entrypoints 0.3 0.000031s\n",
+ "async_generator : async_generator 1.10 0.000043s\n",
+ "absl-py : absl 0.8.1 0.000055s\n",
+ "cryptography : cryptography 2.8 0.000048s\n",
+ "tornado : tornado 6.0.3 0.000033s\n",
+ "bokeh : bokeh 1.3.4 0.000038s\n",
+ "seaborn : seaborn 0.9.0 0.000033s\n",
+ "nbformat : nbformat 4.4.0 0.000043s\n",
+ "param : param 1.9.2 0.000034s\n",
+ "pyviz_comms : pyviz_comms 0.7.2 0.000032s\n",
+ "holoviews : holoviews 1.12.6 0.000031s\n",
+ "alabaster : alabaster 0.7.12 0.000032s\n",
+ "Babel : babel 2.7.0 0.000039s\n",
+ "snowballstemmer : snowballstemmer 2.0.0 0.000037s\n",
+ "docutils : docutils 0.15.2 0.000036s\n",
+ "imagesize : imagesize 1.1.0 0.000030s\n",
+ "sphinxcontrib-websupport : sphinxcontrib.websupport 1.1.2 0.000037s\n",
+ "Sphinx : sphinx 1.8.5 0.000032s\n",
+ "pexpect : pexpect 4.7.0 0.000038s\n",
+ "ipython : IPython 7.9.0 0.000031s\n",
+ "ipynb : ipynb 0.5.1 0.000029s\n",
+ "jupyter_core : jupyter_core 4.6.1 0.000035s\n",
+ "retrying : retrying 1.3.3 0.000032s\n",
+ "plotly : plotly 4.2.1 0.000035s\n",
+ "tikzplotlib : tikzplotlib 0.8.4 0.000037s\n",
+ "jupyter_client : jupyter_client 5.3.4 0.000029s\n",
+ "traitlets : traitlets 4.3.3 0.000028s\n",
+ "pyzmq : zmq 18.1.0 0.000028s\n",
+ "singledispatch : singledispatch 3.4.0.3 0.000030s\n",
+ "ipyparallel : ipyparallel 6.2.4 0.000035s\n",
+ "ipykernel : ipykernel 5.1.3 0.000036s\n",
+ "terminado : terminado 0.8.2 0.000032s\n",
+ "bleach : bleach 3.1.0 0.000028s\n",
+ "mistune : mistune 0.8.4 0.000027s\n",
+ "pandocfilters : pandocfilters 1.4.2 0.000037s\n",
+ "Pygments : pygments 2.4.2 0.000032s\n",
+ "testpath : testpath 0.4.4 0.000028s\n",
+ "nbconvert : nbconvert 5.6.1 0.000027s\n",
+ "ipython_genutils : ipython_genutils 0.2.0 0.000034s\n",
+ "Send2Trash : send2trash 1.5.0 0.000027s\n",
+ "notebook : notebook 6.0.2 0.000033s\n",
+ "version_information : version_information 1.0.3 0.000028s\n",
+ "lesscpy : lesscpy 0.13.0 0.000027s\n",
+ "prometheus-client : prometheus_client 0.7.1 0.000026s\n",
+ "jupyterthemes : jupyterthemes 0.20.0 0.000031s\n",
+ "zipp : zipp 0.6.0 0.000036s\n",
+ "importlib_metadata : importlib_metadata 0.23 0.000039s\n",
+ "jsonschema : jsonschema 3.1.1 0.000027s\n",
+ "jupyterlab_launcher : jupyterlab_launcher 0.13.1 0.000029s\n",
+ "sphinx_rtd_theme : sphinx_rtd_theme 0.4.3 0.000027s\n",
+ "future : future 0.18.1 0.000026s\n",
+ "commonmark : commonmark 0.9.1 0.000026s\n",
+ "recommonmark : recommonmark 0.6.0 0.000037s\n",
+ "jupyterlab : jupyterlab 1.2.1 0.000027s\n",
+ "json5 : json5 0.8.5 0.000027s\n",
+ "jupyterlab_server : jupyterlab_server 1.0.6 0.000031s\n",
+ "ptyprocess : ptyprocess 0.6.0 0.000037s\n",
+ "defusedxml : defusedxml 0.6.0 0.000026s\n",
+ "widgetsnbextension : widgetsnbextension 3.5.1 0.000026s\n",
+ "ipywidgets : ipywidgets 7.5.1 0.000033s\n",
+ "ipydatawidgets : ipydatawidgets 4.0.1 0.000026s\n",
+ "traittypes : traittypes 0.2.1 0.000026s\n",
+ "bqplot : bqplot 0.11.9 0.000025s\n",
+ "jupyter_bokeh : jupyter_bokeh 1.1.1 != \u001b[31m\u001b[31mNO MATCH\u001b[0m\u001b[0m 0.000026s\n",
+ "pythreejs : pythreejs 2.1.1 0.000034s\n",
+ "PyWavelets : pywt 1.1.1 0.000035s\n",
+ "imageio : imageio 2.6.1 0.000032s\n",
+ "networkx : networkx 2.3 0.000026s\n",
+ "scikit-image : skimage 0.16.2 0.000026s\n",
+ "ipywebrtc : ipywebrtc 0.5.0 0.000026s\n",
+ "ipyvolume : ipyvolume 0.5.2 0.000025s\n",
+ "branca : branca 0.3.1 0.000036s\n",
+ "ipyleaflet : ipyleaflet 0.11.4 0.000027s\n",
+ "ipympl : ipympl 0.3.3 0.000024s\n",
+ "PyYAML : yaml 5.1.2 0.000024s\n",
+ "jupyter_nbextensions_configurator : jupyter_nbextensions_configurator 0.4.1 0.000023s\n",
+ "jupyter_latex_envs : latex_envs 1.4.6 != \u001b[31m1.4.0 \u001b[0m 0.000024s\n",
+ "jupyter_highlight_selected_word : jupyter_highlight_selected_word 0.2.0 0.000023s\n",
+ "jupyter_contrib_core : jupyter_contrib_core 0.3.3 0.000023s\n",
+ "jupyter_contrib_nbextensions : jupyter_contrib_nbextensions 0.5.1 0.000023s\n",
+ "rise : rise 5.5.1 0.000030s\n",
+ "typing-extensions : typing_extensions 3.7.4 0.000024s\n",
+ "idna-ssl : idna_ssl 1.1.0 0.000029s\n",
+ "multidict : multidict 4.5.2 0.000024s\n",
+ "yarl : yarl 1.3.0 0.000027s\n",
+ "async-timeout : async_timeout 3.0.1 0.000024s\n",
+ "aiohttp : aiohttp 3.6.2 0.000025s\n",
+ "simpervisor : simpervisor 0.3 0.000024s\n",
+ "jupyter_server : jupyter_server 0.1.1 0.000031s\n",
+ "jupyter-server-proxy : jupyter_server_proxy 1.1.0 0.000025s\n",
+ "jupyterlab_github : jupyterlab_github 1.0.1 != \u001b[31m1.0.0 \u001b[0m 0.000028s\n",
+ "jupyterlab-gitlab : jupyterlab_gitlab 0.3.0 != \u001b[31m0.2.0 \u001b[0m 0.000033s\n",
+ "jupyterlab-quickopen : jupyterlab_quickopen 0.3.0 0.000025s\n",
+ "zstandard : zstandard 0.12.0 0.000023s\n",
+ "itk_core : itk_core \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "itk_filtering : itk_filtering \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "itk_segmentation : itk_segmentation \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "itk_numerics : itk_numerics \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "itk_registration : itk_registration \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "itk_io : itk_io \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "itk-meshtopolydata : itk-meshtopolydata \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "pyct : pyct 0.4.6 0.000033s\n",
+ "colorcet : colorcet 2.0.2 != \u001b[31m1.0.0 \u001b[0m 0.000027s\n",
+ "itkwidgets : itkwidgets 0.22.0 0.000023s\n",
+ "ujson : ujson 1.35 0.000023s\n",
+ "jupyterlab_iframe : jupyterlab_iframe 0.2.1 0.000023s\n",
+ "python-dotenv : dotenv 0.10.3 0.000022s\n",
+ "jupyterlab_latex : jupyterlab_latex 1.0.0 0.000027s\n",
+ "jupyterlab_slurm : jupyterlab_slurm 1.0.5 0.000026s\n",
+ "jupyterlmod : jupyterlmod 1.7.5 0.000022s\n",
+ "nbresuse : nbresuse 0.3.2 0.000032s\n",
+ "colorama : colorama 0.4.1 0.000027s\n",
+ "nbdime : nbdime 1.1.0 0.000024s\n",
+ "smmap2 : smmap 2.0.5 0.000022s\n",
+ "gitdb2 : gitdb 2.0.6 0.000023s\n",
+ "GitPython : git 3.0.4 0.000022s\n",
+ "jupyterlab-git : jupyterlab_git 0.8.1 0.000022s\n",
+ "sidecar : sidecar 0.3.0 0.000029s\n",
+ "pycodestyle : pycodestyle 2.5.0 0.000030s\n",
+ "autopep8 : autopep8 1.4.4 0.000023s\n",
+ "yapf : yapf 0.28.0 0.000023s\n",
+ "toml : toml 0.10.0 0.000022s\n",
+ "pathspec : pathspec 0.6.0 0.000024s\n",
+ "typed_ast : typed_ast 1.4.0 0.000022s\n",
+ "regex : regex 2019.11.1 != \u001b[31m2.5.65 \u001b[0m 0.000022s\n",
+ "black : black 19.3b0 0.000022s\n",
+ "jupyterlab-code-formatter : jupyterlab_code_formatter 0.6.1 0.000022s\n",
+ "pamela : pamela 1.0.0 0.000031s\n",
+ "certipy : certipy 0.1.3 0.000023s\n",
+ "oauthlib : oauthlib 3.1.0 0.000026s\n",
+ "jupyterhub : jupyterhub 1.0.0 0.000024s\n",
+ "appmode : appmode 0.6.0 0.000022s\n",
+ "HeapDict : heapdict 1.0.1 0.000022s\n",
+ "zict : zict 1.0.0 0.000026s\n",
+ "tblib : tblib 1.5.0 0.000023s\n",
+ "sortedcontainers : sortedcontainers 2.1.0 0.000029s\n",
+ "msgpack : msgpack 0.6.2 0.000023s\n",
+ "dask : dask 2.6.0 0.000028s\n",
+ "distributed : distributed 2.6.0 0.000023s\n",
+ "dask-jobqueue : dask-jobqueue \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "dask_labextension : dask_labextension 1.0.3 0.000032s\n",
+ "Automat : automat 0.8.0 0.000025s\n",
+ "PyHamcrest : hamcrest 1.9.0 0.000028s\n",
+ "Twisted : twisted 19.7.0 0.000023s\n",
+ "autobahn : autobahn 19.10.1 0.000023s\n",
+ "constantly : constantly 15.1.0 0.000022s\n",
+ "hyperlink : hyperlink 19.0.0 0.000021s\n",
+ "incremental : incremental 17.5.0 0.000025s\n",
+ "txaio : txaio 18.8.1 0.000031s\n",
+ "zope.interface : zope.interface 4.6.0 0.000024s\n",
+ "backcall : backcall 0.1.0 0.000025s\n",
+ "wslink : wslink 0.1.11 0.000023s\n",
+ "jupyterlab_pygments : jupyterlab_pygments 0.1.0 0.000023s\n",
+ "ipyvue : ipyvue 1.0.0 0.000023s\n",
+ "ipyvuetify : ipyvuetify 1.1.1 0.000022s\n",
+ "voila : voila 0.1.14 0.000024s\n",
+ "voila-material : - 0.2.5 0.000000s\n",
+ "voila-gridstack : - 0.0.6 0.000000s\n",
+ "voila-vuetify : - 0.1.1 0.000001s\n",
+ "dicom-upload : dicom-upload \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "fileupload : fileupload master != \u001b[31m0.1.0.dev \u001b[0m 0.000032s\n",
+ "pvlink : pvlink 0.1.2 0.000025s\n",
+ "julia : julia 0.5.0 0.000023s\n",
+ "textwrap3 : textwrap3 0.9.2 0.000022s\n",
+ "ansiwrap : ansiwrap 0.8.4 0.000027s\n",
+ "backports.weakref : backports.weakref 1.0.post1 0.000022s\n",
+ "backports.tempfile : backports.tempfile 1.0 0.000027s\n",
+ "tqdm : tqdm 4.41.0 0.000026s\n",
+ "tenacity : tenacity 6.0.0 0.000037s\n",
+ "papermill : papermill 1.2.1 0.000027s\n",
+ "patsy : patsy 0.5.1 0.000023s\n",
+ "statsmodels : statsmodels 0.10.2 0.000023s\n",
+ "cftime : cftime 1.0.4.2 0.000022s\n",
+ "vega_datasets : vega_datasets 0.8.0 0.000022s\n",
+ "arviz : arviz 0.5.1 0.000022s\n",
+ "Theano : Theano \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "altair : altair 3.3.0 0.000031s\n",
+ "cssselect : cssselect 1.1.0 0.000025s\n",
+ "smopy : smopy 0.0.7 != \u001b[31m0.0.6 \u001b[0m 0.000022s\n",
+ "joblib : joblib 0.14.1 0.000023s\n",
+ "scikit-learn : scikit-learn \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "memory_profiler : memory_profiler 0.55.0 0.000032s\n",
+ "h5py : h5py 2.10.0 0.000025s\n",
+ "line_profiler : line_profiler 2.1.2 != \u001b[31m\u001b[31mNO MATCH\u001b[0m\u001b[0m 0.000023s\n",
+ "pymc3 : pymc3 3.8 0.000027s\n",
+ "llvmlite : llvmlite 0.30.0 0.000024s\n",
+ "numba : numba 0.46.0 0.000022s\n",
+ "numexpr : numexpr 2.7.0 0.000022s\n",
+ "ipythonblocks : ipythonblocks 1.9.0 0.000024s\n",
+ "pydub : pydub 0.23.1 0.000028s\n",
+ "multipledispatch : multipledispatch 0.6.0 0.000027s\n",
+ "partd : partd 1.1.0 0.000022s\n",
+ "locket : locket 0.2.0 0.000022s\n",
+ "fsspec : fsspec 0.6.2 0.000025s\n",
+ "datashape : datashape 0.5.2 0.000023s\n",
+ "datashader : datashader 0.9.0 0.000023s\n",
+ "selenium : selenium 3.141.0 0.000021s\n",
+ "graphviz : graphviz 0.13.2 0.000022s\n",
+ "vincent : vincent 0.4.4 0.000027s\n",
+ "Shapely : Shapely \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "pyshp : pyshp \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "Cartopy : Cartopy \u001b[31mIMPORT FAILED\u001b[0m\n",
+ "pandas-datareader : pandas-datareader \u001b[31mIMPORT FAILED\u001b[0m\n"
+ ]
+ }
+ ],
+ "source": [
+ "import importlib\n",
+ "from colorama import Fore, Style\n",
+ "from timeit import default_timer as timer\n",
+ "\n",
+ "print(\"PYPI NAME\".ljust(20), \": \", \"IMPORT NAME\".ljust(20) + \"REQ.VERS.|INST.VERS.\".ljust(25) + \"IMPORT TIME\")\n",
+ "print(\"=================================================================================\")\n",
+ "for pkg_name, pkg_version, pkg_importname in pkg_list:\n",
+ " if not pkg_importname:\n",
+ " pkg_importname = pkg_name\n",
+ " pkg = None\n",
+ " \n",
+ " try:\n",
+ " # import package\n",
+ " start_time = timer()\n",
+ " if pkg_importname != \"-\":\n",
+ " pkg = importlib.import_module(pkg_importname)\n",
+ " import_time = timer() - start_time\n",
+ " \n",
+ " # get version\n",
+ " try:\n",
+ " version = pkg.__version__\n",
+ " if not isinstance(pkg.__version__, str):\n",
+ " raise\n",
+ " except:\n",
+ " version = get_version(pkg_name)\n",
+ " \n",
+ " if version != pkg_version:\n",
+ " version = pkg_version.ljust(10) + \" != \" + f\"{Fore.RED}\" + version.ljust(10) + f\"{Style.RESET_ALL}\"\n",
+ "\n",
+ " print(pkg_name.ljust(20), \": \", pkg_importname.ljust(20), version.ljust(24), f\"{import_time:.6f}\"+\"s\")\n",
+ " except:\n",
+ " print(pkg_name.ljust(20), \": \", pkg_importname.ljust(20), f\"{Fore.RED}IMPORT FAILED{Style.RESET_ALL}\") \n",
+ " \n",
+ " #try:\n",
+ " # print(\"\".ljust(24), pkg.__file__)\n",
+ " #except:\n",
+ " # print(\"\".ljust(24), f\"{Fore.RED}UNKNOWN{Style.RESET_ALL}\")"
+ ]
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.6.8"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}
--
GitLab