diff --git a/scalingtest/4gpusPerNode.ipynb b/scalingtest/4gpusPerNode.ipynb
new file mode 100644
index 0000000000000000000000000000000000000000..fab9d036e71dad4ba6ee3c5e0df500bd31980c33
Binary files /dev/null and b/scalingtest/4gpusPerNode.ipynb differ
diff --git a/scalingtest/_build/html/4gpusPerNode.html b/scalingtest/_build/html/4gpusPerNode.html
new file mode 100644
index 0000000000000000000000000000000000000000..07609a44ce5e774a4437d4cfe48c6812f2fcdfc0
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diff --git a/scalingtest/_build/html/ArborJuwels.html b/scalingtest/_build/html/ArborJuwels.html
index 75606e3fec0256d598085c097f7d377070e15fca..dfa653653e52f66ba7f40fac7caa7219fb458407 100644
Binary files a/scalingtest/_build/html/ArborJuwels.html and b/scalingtest/_build/html/ArborJuwels.html differ
diff --git a/scalingtest/_build/html/Energy.html b/scalingtest/_build/html/Energy.html
index f3fae399a48d29ff6d1a1de744cc32b1b28b93b1..35d918a77adf0d529d8b18b654b414f95ea05f67 100644
--- a/scalingtest/_build/html/Energy.html
+++ b/scalingtest/_build/html/Energy.html
@@ -182,6 +182,10 @@
         <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
+
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
+
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
 </ul>
@@ -381,7 +385,7 @@ document.write(`
 <div id="searchbox"></div>
                 <article class="bd-article">
                   
-  <section class="tex2jax_ignore mathjax_ignore" id="energy-modelling">
+  <section id="energy-modelling">
 <h1>Energy Modelling<a class="headerlink" href="#energy-modelling" title="Link to this heading">#</a></h1>
 <div class="cell docutils container">
 <div class="cell_input docutils container">
@@ -465,7 +469,7 @@ document.write(`
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[&lt;matplotlib.lines.Line2D at 0x7276e1be5940&gt;]
+<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[&lt;matplotlib.lines.Line2D at 0x77a4296b5580&gt;]
 </pre></div>
 </div>
 <img alt="_images/7ad666fe6fed0e976650df0613298907170fd87b8341b3f49a7298701fb24b10.png" src="_images/7ad666fe6fed0e976650df0613298907170fd87b8341b3f49a7298701fb24b10.png" />
@@ -768,7 +772,7 @@ Minimum energy consumption: 0.02
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[&lt;matplotlib.lines.Line2D at 0x7276dcbc3320&gt;]
+<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[&lt;matplotlib.lines.Line2D at 0x77a42530a840&gt;]
 </pre></div>
 </div>
 <img alt="_images/8a10d48ceff7cfd03c0d32acb16383d192278c993d8865778ca25f20c9b46ed5.png" src="_images/8a10d48ceff7cfd03c0d32acb16383d192278c993d8865778ca25f20c9b46ed5.png" />
diff --git a/scalingtest/_build/html/Untitled.html b/scalingtest/_build/html/Untitled.html
index 1e19b63df74373926e4301dc6b29d554cf6109da..0e22cb833aed6a13fc5b632117dbcae56f1b6ead 100644
--- a/scalingtest/_build/html/Untitled.html
+++ b/scalingtest/_build/html/Untitled.html
@@ -57,8 +57,6 @@
     <script async="async" src="_static/sphinx-thebe.js?v=c100c467"></script>
     <script>var togglebuttonSelector = '.toggle, .admonition.dropdown';</script>
     <script>const THEBE_JS_URL = "https://unpkg.com/thebe@0.8.2/lib/index.js"; const thebe_selector = ".thebe,.cell"; const thebe_selector_input = "pre"; const thebe_selector_output = ".output, .cell_output"</script>
-    <script>window.MathJax = {"options": {"processHtmlClass": "tex2jax_process|mathjax_process|math|output_area"}}</script>
-    <script defer="defer" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js"></script>
     <script>DOCUMENTATION_OPTIONS.pagename = 'Untitled';</script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
@@ -184,6 +182,10 @@
         <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
+
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
+
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
 </ul>
@@ -396,7 +398,7 @@ document.write(`
 </ul>
 </li>
 <li class="toc-h1 nav-item toc-entry"><a class="reference internal nav-link" href="#id1"></a><ul class="visible nav section-nav flex-column">
-<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#practical-constraint-a-leq-b">Practical Constraint: <span class="math notranslate nohighlight">\( a \leq b\)</span></a></li>
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#practical-constraint-a-leq-b">Practical Constraint: $ a \leq b$</a></li>
 </ul>
 </li>
 <li class="toc-h1 nav-item toc-entry"><a class="reference internal nav-link" href="#id2">Parallel Speedup Model Analysis</a><ul class="visible nav section-nav flex-column">
@@ -434,14 +436,14 @@ document.write(`
 <div id="searchbox"></div>
                 <article class="bd-article">
                   
-  <section class="tex2jax_ignore mathjax_ignore" id="performance-modelling">
+  <section id="performance-modelling">
 <h1>Performance modelling<a class="headerlink" href="#performance-modelling" title="Link to this heading">#</a></h1>
 </section>
-<section class="tex2jax_ignore mathjax_ignore" id="parallel-speedup-model-analysis">
+<section id="parallel-speedup-model-analysis">
 <h1>Parallel Speedup Model Analysis<a class="headerlink" href="#parallel-speedup-model-analysis" title="Link to this heading">#</a></h1>
 <section id="model-definition">
 <h2>Model Definition<a class="headerlink" href="#model-definition" title="Link to this heading">#</a></h2>
-<p>The proposed speedup model is a function of the number of nodes (<code class="docutils literal notranslate"><span class="pre">N</span></code>), with parameters <span class="math notranslate nohighlight">\(\alpha\)</span> (parallel potential) and <span class="math notranslate nohighlight">\(\beta\)</span> (saturation rate):</p>
+<p>The proposed speedup model is a function of the number of nodes (<code class="docutils literal notranslate"><span class="pre">N</span></code>), with parameters $\alpha$ (parallel potential) and $\beta$ (saturation rate):</p>
 <p>\[
 S(N) = 1 + \frac{\alpha (N - 1)}{\beta + (N - 1)}
 \]</p>
@@ -449,8 +451,8 @@ S(N) = 1 + \frac{\alpha (N - 1)}{\beta + (N - 1)}
 <h3>Parameters:<a class="headerlink" href="#parameters" title="Link to this heading">#</a></h3>
 <ul class="simple">
 <li><p><strong><code class="docutils literal notranslate"><span class="pre">N</span></code></strong>: Number of nodes (≥1)</p></li>
-<li><p><span class="math notranslate nohighlight">\(\alpha\)</span> : Maximum additional speedup beyond sequential execution</p></li>
-<li><p><span class="math notranslate nohighlight">\(\beta\)</span> Half-saturation point (controls how quickly speedup plateaus)</p></li>
+<li><p>$\alpha$ : Maximum additional speedup beyond sequential execution</p></li>
+<li><p>$\beta$ Half-saturation point (controls how quickly speedup plateaus)</p></li>
 </ul>
 <p>\[
 S(1) = 1 + \frac{\alpha (1 - 1)}{\beta + (1 - 1)} = 1
@@ -464,13 +466,13 @@ S(1) = 1 + \frac{\alpha (1 - 1)}{\beta + (1 - 1)} = 1
 <p>\[
 S(N) = 1 + \frac{\alpha (N - 1)}{\beta + (N - 1)} \approx  1 + \frac{\alpha (N - 1)}{\beta}
 \]</p>
-<p>Speedup scales linearly with <span class="math notranslate nohighlight">\(N\)</span>, with slope <span class="math notranslate nohighlight">\(\frac{\alpha}{\beta}\)</span></p>
+<p>Speedup scales linearly with $N$, with slope $\frac{\alpha}{\beta}$</p>
 </section>
 </section>
 <hr class="docutils" />
 <section id="derivative-marginal-speedup-gain">
 <h2>Derivative (Marginal Speedup Gain)<a class="headerlink" href="#derivative-marginal-speedup-gain" title="Link to this heading">#</a></h2>
-<p>The derivative <span class="math notranslate nohighlight">\(\frac{dS}{dn}\)</span> describes how much speedup improves per additional node:</p>
+<p>The derivative $\frac{dS}{dn}$ describes how much speedup improves per additional node:</p>
 <p>\[
 \frac{dS}{dN} = \frac{\alpha \beta}{(\beta + N - 1)^2}
 \]</p>
@@ -484,7 +486,7 @@ S(N) = 1 + \frac{\alpha (N - 1)}{\beta + (N - 1)} \approx  1 + \frac{\alpha (N -
 </li>
 <li><p><strong>Half-saturation</strong>:</p>
 <ul class="simple">
-<li><p>Derivative halves when (n = <span class="math notranslate nohighlight">\(\beta\)</span> + 1).</p></li>
+<li><p>Derivative halves when (n = $\beta$ + 1).</p></li>
 </ul>
 </li>
 </ol>
@@ -493,16 +495,16 @@ S(N) = 1 + \frac{\alpha (N - 1)}{\beta + (N - 1)} \approx  1 + \frac{\alpha (N -
 <hr class="docutils" />
 <section id="maximum-theoretical-speedup">
 <h2>Maximum Theoretical Speedup<a class="headerlink" href="#maximum-theoretical-speedup" title="Link to this heading">#</a></h2>
-<p>The asymptotic limit as (n \to <span class="math notranslate nohighlight">\(\infty \)</span>):</p>
+<p>The asymptotic limit as (n \to $\infty $):</p>
 <p>\[
 S_{\text{max}} = \lim_{n \to \infty} S(n) = 1 + a
 \]</p>
 </section>
 </section>
-<section class="tex2jax_ignore mathjax_ignore" id="id1">
+<section id="id1">
 <h1><a class="headerlink" href="#id1" title="Link to this heading">#</a></h1>
 <section id="practical-constraint-a-leq-b">
-<h2>Practical Constraint: <span class="math notranslate nohighlight">\( a \leq b\)</span><a class="headerlink" href="#practical-constraint-a-leq-b" title="Link to this heading">#</a></h2>
+<h2>Practical Constraint: $ a \leq b$<a class="headerlink" href="#practical-constraint-a-leq-b" title="Link to this heading">#</a></h2>
 <p>In real-world systems, <strong>adding nodes never provides perfect linear scaling</strong> due to:</p>
 <ol class="arabic simple">
 <li><p><strong>Communication Overhead</strong>:</p>
@@ -514,7 +516,7 @@ S_{\text{max}} = \lim_{n \to \infty} S(n) = 1 + a
 </section>
 </section>
 <hr class="docutils" />
-<section class="tex2jax_ignore mathjax_ignore" id="id2">
+<section id="id2">
 <h1>Parallel Speedup Model Analysis<a class="headerlink" href="#id2" title="Link to this heading">#</a></h1>
 <section id="id3">
 <h2>Model Definition<a class="headerlink" href="#id3" title="Link to this heading">#</a></h2>
@@ -590,11 +592,11 @@ S(1) = 1 + \frac{a (1 - 1)}{b + (1 - 1)} = 1
 </thead>
 <tbody>
 <tr class="row-even"><td><p>Initial Slope</p></td>
-<td><p><span class="math notranslate nohighlight">\( \frac{a}{b} \leq 1 \)</span></p></td>
+<td><p>$ \frac{a}{b} \leq 1 $</p></td>
 <td><p>Early scaling efficiency (lower = worse)</p></td>
 </tr>
 <tr class="row-odd"><td><p>Saturation Point</p></td>
-<td><p><span class="math notranslate nohighlight">\( n \approx b \)</span></p></td>
+<td><p>$ n \approx b $</p></td>
 <td><p>Nodes needed for significant diminishing returns</p></td>
 </tr>
 </tbody>
@@ -769,7 +771,7 @@ S_{\text{max}} = 1 + a \quad \text{(where } a \leq b\text{)}
 </ul>
 </li>
 <li class="toc-h1 nav-item toc-entry"><a class="reference internal nav-link" href="#id1"></a><ul class="visible nav section-nav flex-column">
-<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#practical-constraint-a-leq-b">Practical Constraint: <span class="math notranslate nohighlight">\( a \leq b\)</span></a></li>
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#practical-constraint-a-leq-b">Practical Constraint: $ a \leq b$</a></li>
 </ul>
 </li>
 <li class="toc-h1 nav-item toc-entry"><a class="reference internal nav-link" href="#id2">Parallel Speedup Model Analysis</a><ul class="visible nav section-nav flex-column">
diff --git a/scalingtest/_build/html/_sources/4gpusPerNode.ipynb b/scalingtest/_build/html/_sources/4gpusPerNode.ipynb
new file mode 100644
index 0000000000000000000000000000000000000000..fab9d036e71dad4ba6ee3c5e0df500bd31980c33
Binary files /dev/null and b/scalingtest/_build/html/_sources/4gpusPerNode.ipynb differ
diff --git a/scalingtest/_build/html/_sources/basicPlotting.ipynb b/scalingtest/_build/html/_sources/basicPlotting.ipynb
index ba2a6379aeb231c526232aac98eabecbc0b1e19c..77ca8b4a533a9fee21f358deaed10298a237b35a 100644
--- a/scalingtest/_build/html/_sources/basicPlotting.ipynb
+++ b/scalingtest/_build/html/_sources/basicPlotting.ipynb
@@ -3,7 +3,13 @@
   {
    "cell_type": "markdown",
    "id": "6d42adb4-b890-418a-a655-919046f3bcb9",
-   "metadata": {},
+   "metadata": {
+    "editable": true,
+    "slideshow": {
+     "slide_type": ""
+    },
+    "tags": []
+   },
    "source": [
     "# Strong Scaling Performance Analysis\n",
     "\n",
@@ -80,9 +86,11 @@
    "execution_count": 53,
    "id": "ebf89efa-3611-4a4c-b584-e4b6efa34d23",
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    }
+    "editable": true,
+    "slideshow": {
+     "slide_type": ""
+    },
+    "tags": []
    },
    "outputs": [
     {
diff --git a/scalingtest/_build/html/_sources/gpuPerformanceTest.ipynb b/scalingtest/_build/html/_sources/gpuPerformanceTest.ipynb
index 14f0011b13f71770e6be33a03aad71fefb3ddeb8..1ca9cb128840e568b6ef0fe5fb5285173ddd1fe0 100644
Binary files a/scalingtest/_build/html/_sources/gpuPerformanceTest.ipynb and b/scalingtest/_build/html/_sources/gpuPerformanceTest.ipynb differ
diff --git a/scalingtest/_build/html/_sources/introtobenchmarking.ipynb b/scalingtest/_build/html/_sources/introtobenchmarking.ipynb
index 90cc26e1c9429a7e3ba471cfa19368b395c24470..4937b1829d3824068dd6825d90774e63efe4f04c 100644
--- a/scalingtest/_build/html/_sources/introtobenchmarking.ipynb
+++ b/scalingtest/_build/html/_sources/introtobenchmarking.ipynb
@@ -3,7 +3,13 @@
   {
    "cell_type": "markdown",
    "id": "bc422a75-2f81-4579-aa1d-13fca18b5ddf",
-   "metadata": {},
+   "metadata": {
+    "editable": true,
+    "slideshow": {
+     "slide_type": ""
+    },
+    "tags": []
+   },
    "source": [
     "# HPC Benchmarking\n",
     "\n",
diff --git a/scalingtest/_build/html/basicPlotting.html b/scalingtest/_build/html/basicPlotting.html
index dabed1603d0c53fd2e22525037d8c0e431a92ffd..bf275972b62742f57d2204bee764a623512ddc25 100644
--- a/scalingtest/_build/html/basicPlotting.html
+++ b/scalingtest/_build/html/basicPlotting.html
@@ -60,7 +60,7 @@
     <script>DOCUMENTATION_OPTIONS.pagename = 'basicPlotting';</script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
-    <link rel="next" title="Arbor benchmarking on SuperComputers" href="ArborJuwels.html" />
+    <link rel="next" title="Benchmarking on GPUs" href="gpuPerformanceTest.html" />
     <link rel="prev" title="HPC Benchmarking" href="introtobenchmarking.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
@@ -182,6 +182,10 @@
         <ul class="current nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1 current active"><a class="current reference internal" href="#">Strong Scaling Performance Analysis</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
+
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
+
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
 </ul>
@@ -400,7 +404,7 @@ document.write(`
 <div id="searchbox"></div>
                 <article class="bd-article">
                   
-  <section class="tex2jax_ignore mathjax_ignore" id="strong-scaling-performance-analysis">
+  <section id="strong-scaling-performance-analysis">
 <h1>Strong Scaling Performance Analysis<a class="headerlink" href="#strong-scaling-performance-analysis" title="Link to this heading">#</a></h1>
 <section id="speedup-analysis">
 <h2>Speedup Analysis<a class="headerlink" href="#speedup-analysis" title="Link to this heading">#</a></h2>
@@ -8344,9 +8348,9 @@ maplibre-gl/dist/maplibre-gl.js:
 
 window.Plotly = Plotly;
 return Plotly;
-}));</script>                <div id="d04906a8-71fe-439f-b066-5f59ab7fe443" class="plotly-graph-div" style="height:525px; width:100%;"></div>            <script type="text/javascript">                window.PLOTLYENV=window.PLOTLYENV || {};                                if (document.getElementById("d04906a8-71fe-439f-b066-5f59ab7fe443")) {                    Plotly.newPlot(                        "d04906a8-71fe-439f-b066-5f59ab7fe443",                        [{"line":{"color":"#33cc33","width":2},"marker":{"color":"#33cc33","size":10,"symbol":"circle"},"mode":"lines+markers","name":"JUWELS (Actual)","x":{"dtype":"i2","bdata":"AQACAAQACAAQACAAQACAAAABAAIABA=="},"y":{"dtype":"f8","bdata":"AAAAAAAA8D\u002foCVyAykL9P4h+qj\u002f5fgtAusW90GAVHUCpi7wya0orQCAefB4GrzlA7FT0S5LHSECWtVhCJxlZQJUj73UJimVAM7CfX6hFc0A4YG1Y6f18QA=="},"type":"scatter","xaxis":"x","yaxis":"y"},{"line":{"color":"black","dash":"dot","width":2},"mode":"lines","name":"Theoretical 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-var gd = document.getElementById('cb5df2db-98cb-4937-827f-b69795502804');
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       </div>
     </a>
     <a class="right-next"
-       href="ArborJuwels.html"
+       href="gpuPerformanceTest.html"
        title="next page">
       <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title">Arbor benchmarking on SuperComputers</p>
+        <p class="prev-next-title">Benchmarking on GPUs</p>
       </div>
       <i class="fa-solid fa-angle-right"></i>
     </a>
diff --git a/scalingtest/_build/html/energyPlots.html b/scalingtest/_build/html/energyPlots.html
index 4bbea088b91e0ce327fd7b481ba979570c50640f..9a6d646cd6d3f295d2c314a8dfde8c6d7e3b949e 100644
--- a/scalingtest/_build/html/energyPlots.html
+++ b/scalingtest/_build/html/energyPlots.html
@@ -182,8 +182,9 @@
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 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
-<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">TODO:</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
 
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
 
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
@@ -384,7 +385,7 @@ document.write(`
 <div id="searchbox"></div>
                 <article class="bd-article">
                   
-  <section class="tex2jax_ignore mathjax_ignore" id="plots-of-energy-and-energy-speed-up-compunsiation">
+  <section id="plots-of-energy-and-energy-speed-up-compunsiation">
 <h1>Plots of energy and energy speed up compunsiation<a class="headerlink" href="#plots-of-energy-and-energy-speed-up-compunsiation" title="Link to this heading">#</a></h1>
 <p>As we add more node, energy (joules) start to increase, in the linear case it should scale linearly but . In this study, we are going to find out energy and speedup compensation. as we add more node, energy consumption per node decrease and we gain speedup.</p>
 <div class="cell docutils container">
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-<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[&lt;matplotlib.lines.Line2D at 0x7c57351c15e0&gt;]
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diff --git a/scalingtest/_build/html/genindex.html b/scalingtest/_build/html/genindex.html
index d07566e999253b766a3b8fda8dd8dcd42845b6b3..0a85560970940d0061fce9d570cb07feda114c1c 100644
--- a/scalingtest/_build/html/genindex.html
+++ b/scalingtest/_build/html/genindex.html
@@ -181,8 +181,9 @@
         <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
-<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">TODO:</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
 
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
 
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
diff --git a/scalingtest/_build/html/gpuPerformanceTest.html b/scalingtest/_build/html/gpuPerformanceTest.html
index 822b8b858cdc2567cc60e3e3bb439a58e7056b62..670fd47140805fbab42f3aa00a9a5860333b78d5 100644
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diff --git a/scalingtest/_build/html/intro.html b/scalingtest/_build/html/intro.html
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--- a/scalingtest/_build/html/intro.html
+++ b/scalingtest/_build/html/intro.html
@@ -183,8 +183,9 @@
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 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
-<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">TODO:</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
 
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
 
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
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 <div id="searchbox"></div>
                 <article class="bd-article">
                   
-  <section class="tex2jax_ignore mathjax_ignore" id="welcome-to-your-jupyter-book">
+  <section id="welcome-to-your-jupyter-book">
 <h1>Welcome to your Jupyter Book<a class="headerlink" href="#welcome-to-your-jupyter-book" title="Link to this heading">#</a></h1>
 <p>This is a small sample book to give you a feel for how book content is
 structured.
@@ -396,9 +397,10 @@ It does not go in-depth into any particular topic - check out <a class="referenc
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
-<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">TODO:</a></li>
-<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html#slurm-script-to-run-benchmarks">Slurm script to run benchmarks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
 <li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html#gpu-benchmarking">GPU benchmarking</a></li>
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html#benchmarking-results">Benchmarking Results</a></li>
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
 </ul>
diff --git a/scalingtest/_build/html/introtobenchmarking.html b/scalingtest/_build/html/introtobenchmarking.html
index de25ec7443d969d05e43e752ebd85a0aeea2baaa..92a6f3569a31a09effceef326e0da07327b0c6e7 100644
--- a/scalingtest/_build/html/introtobenchmarking.html
+++ b/scalingtest/_build/html/introtobenchmarking.html
@@ -182,8 +182,9 @@
         <ul class="current nav bd-sidenav">
 <li class="toctree-l1 current active"><a class="current reference internal" href="#">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
-<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">TODO:</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
 
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
 
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
@@ -396,7 +397,7 @@ document.write(`
 <div id="searchbox"></div>
                 <article class="bd-article">
                   
-  <section class="tex2jax_ignore mathjax_ignore" id="hpc-benchmarking">
+  <section id="hpc-benchmarking">
 <h1>HPC Benchmarking<a class="headerlink" href="#hpc-benchmarking" title="Link to this heading">#</a></h1>
 <p>High-Performance Computing (HPC) benchmarking helps evaluate how well a system performs under different workloads.</p>
 <section id="stress-test">
diff --git a/scalingtest/_build/html/juwels_results.html b/scalingtest/_build/html/juwels_results.html
index b6b979a6c2c1d0cf5f2b258c660bb28994e6f456..de1b5fcd9f70b34ab2552d0242fddcb5c5e44053 100644
--- a/scalingtest/_build/html/juwels_results.html
+++ b/scalingtest/_build/html/juwels_results.html
@@ -182,6 +182,10 @@
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 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
+
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
+
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
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diff --git a/scalingtest/_build/html/markdown-notebooks.html b/scalingtest/_build/html/markdown-notebooks.html
index 23721640873c797ab9c80b5d69a6e3604bc0399a..a791790868447ed3c41230cb276548fd716597d7 100644
--- a/scalingtest/_build/html/markdown-notebooks.html
+++ b/scalingtest/_build/html/markdown-notebooks.html
@@ -181,6 +181,10 @@
         <ul class="current nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
+
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
+
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1 current active"><a class="current reference internal" href="#">Notebooks with MyST Markdown</a></li>
 </ul>
@@ -392,7 +396,7 @@ document.write(`
 <div id="searchbox"></div>
                 <article class="bd-article">
                   
-  <section class="tex2jax_ignore mathjax_ignore" id="notebooks-with-myst-markdown">
+  <section id="notebooks-with-myst-markdown">
 <h1>Notebooks with MyST Markdown<a class="headerlink" href="#notebooks-with-myst-markdown" title="Link to this heading">#</a></h1>
 <p>Jupyter Book also lets you write text-based notebooks using MyST Markdown.
 See <a class="reference external" href="https://jupyterbook.org/file-types/myst-notebooks.html">the Notebooks with MyST Markdown documentation</a> for more detailed instructions.
diff --git a/scalingtest/_build/html/markdown.html b/scalingtest/_build/html/markdown.html
index a3f41fb7b2a4af4a2a14eb24625c7e13281549eb..1b7f74eaac95575d5a156ca221e804bf2fd244db 100644
--- a/scalingtest/_build/html/markdown.html
+++ b/scalingtest/_build/html/markdown.html
@@ -182,6 +182,10 @@
         <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
+
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
+
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
 </ul>
@@ -394,7 +398,7 @@ document.write(`
 <div id="searchbox"></div>
                 <article class="bd-article">
                   
-  <section class="tex2jax_ignore mathjax_ignore" id="markdown-files">
+  <section id="markdown-files">
 <h1>Markdown Files<a class="headerlink" href="#markdown-files" title="Link to this heading">#</a></h1>
 <p>Whether you write your book’s content in Jupyter Notebooks (<code class="docutils literal notranslate"><span class="pre">.ipynb</span></code>) or
 in regular markdown files (<code class="docutils literal notranslate"><span class="pre">.md</span></code>), you’ll write in the same flavor of markdown
diff --git a/scalingtest/_build/html/notebooks.html b/scalingtest/_build/html/notebooks.html
index 72f6001b37bf6e23ed06219918af4b90fd51d165..bcdbbc9db2edf70de986dd4d2373cc1373c3f337 100644
--- a/scalingtest/_build/html/notebooks.html
+++ b/scalingtest/_build/html/notebooks.html
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     <script>DOCUMENTATION_OPTIONS.pagename = 'notebooks';</script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
@@ -184,6 +182,10 @@
         <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
+
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
+
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
 </ul>
@@ -395,7 +397,7 @@ document.write(`
 <div id="searchbox"></div>
                 <article class="bd-article">
                   
-  <section class="tex2jax_ignore mathjax_ignore" id="content-with-notebooks">
+  <section id="content-with-notebooks">
 <h1>Content with notebooks<a class="headerlink" href="#content-with-notebooks" title="Link to this heading">#</a></h1>
 <p>You can also create content with Jupyter Notebooks. This means that you can include
 code blocks and their outputs in your book.</p>
@@ -403,19 +405,17 @@ code blocks and their outputs in your book.</p>
 <h2>Markdown + notebooks<a class="headerlink" href="#markdown-notebooks" title="Link to this heading">#</a></h2>
 <p>As it is markdown, you can embed images, HTML, etc into your posts!</p>
 <p><img alt="" src="https://myst-parser.readthedocs.io/en/latest/_static/logo-wide.svg" /></p>
-<p>You can also <span class="math notranslate nohighlight">\(add_{math}\)</span> and</p>
-<div class="math notranslate nohighlight">
-\[
+<p>You can also $add_{math}$ and</p>
+<p>$$
 math^{blocks}
-\]</div>
+$$</p>
 <p>or</p>
-<div class="math notranslate nohighlight">
-\[\begin{split}
+<p>$$
 \begin{aligned}
-\mbox{mean} la_{tex} \\ \\
+\mbox{mean} la_{tex} \ \
 math blocks
 \end{aligned}
-\end{split}\]</div>
+$$</p>
 <p>But make sure you $Escape $your $dollar signs $you want to keep!</p>
 </section>
 <section id="myst-markdown">
@@ -438,7 +438,7 @@ For example, here’s some sample Matplotlib code:</p>
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;contextlib.ExitStack at 0x75a0d88683b0&gt;
+<div class="output text_plain highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;contextlib.ExitStack at 0x75e67411a270&gt;
 </pre></div>
 </div>
 </div>
diff --git a/scalingtest/_build/html/objects.inv b/scalingtest/_build/html/objects.inv
index 337c396d2a6b2c44a2ff402215969e03d16d87a9..16ee9dac674c223fe1a4e5303f3e39d8d4e9be1a 100644
--- a/scalingtest/_build/html/objects.inv
+++ b/scalingtest/_build/html/objects.inv
@@ -2,6 +2,7 @@
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-xڅS�N�0|�W�zҽ"�T
-*��Ԣ{DN�$>���^���ω�`s=�f��̎w��-������뫚*��)�����;
YVm���Fʣ����=�u��6C��h1����` ^�5�S��EI
��l��٭�R9]����8#�Ñ-��c�Fif�Ee���)ب�f��s����fF*����!������N+ք�
�X��dkT	f4^���4E��$�	�Q�e���|�|%4�K��+~�	�@2Ɂ��{�aW��=
-���~���h�X��m��?�Ky��ɇ�3Q~�$�-߈Ѡ�3���Ň��Ap�`��P�K�K�O6��Z�Ϛ[y���X��uaI��Y�9������ݿ4�2 ǖ+'�o:��e�/���u�l��="6���
�ӗw
\ No newline at end of file
+xڅSMk�0��W̱=l���R
+٥	l08��"�[��1Ҙ��}%�v�ĥ7�޼��C>���
+��� 8n>5T��#3�Cǽ����}Q���ZjY)��=�����^<N�a�w���w�:�B4|/������B�i�G��rNgꇑ�:�ՠm}d1����u0����^&X�$	s?�����UWI��Bsl#o��P��PW�s�#�w�	����2x�f�NH�,�n�0�8@�a���Ȉ�2
��lÍPG�M���S�+g�=�㼕���SHwB�0s���$��:t���Fw�����D���L�#������Gq�t"����ˢ�v�[&�?���_D4h�jrɂ���R�Mit��`��
+C�=�_6�ܯ�W�\|�����vn6��B̍P3j�����*�L��p�\9��'��܅o�wV���:���	�����E����
\ No newline at end of file
diff --git a/scalingtest/_build/html/results.html b/scalingtest/_build/html/results.html
index 76a8057eebd69f3e770e264fd6654993c2ff8a91..2d99a31f4ae36468b23d46701bf503cda881fbac 100644
--- a/scalingtest/_build/html/results.html
+++ b/scalingtest/_build/html/results.html
@@ -182,6 +182,10 @@
         <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
+
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
+
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
 </ul>
diff --git a/scalingtest/_build/html/search.html b/scalingtest/_build/html/search.html
index f6e06ab0a4bc11ec9da04d60665c62f44beae389..e268dacd9042f69adac72087981d76f5b5945ca3 100644
--- a/scalingtest/_build/html/search.html
+++ b/scalingtest/_build/html/search.html
@@ -183,8 +183,9 @@
         <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="introtobenchmarking.html">HPC Benchmarking</a></li>
 <li class="toctree-l1"><a class="reference internal" href="basicPlotting.html">Strong Scaling Performance Analysis</a></li>
-<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">TODO:</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gpuPerformanceTest.html">Benchmarking on GPUs</a></li>
 
+<li class="toctree-l1"><a class="reference internal" href="4gpusPerNode.html">Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)</a></li>
 
 <li class="toctree-l1"><a class="reference internal" href="ArborJuwels.html">Arbor benchmarking on SuperComputers</a></li>
 <li class="toctree-l1"><a class="reference internal" href="markdown-notebooks.html">Notebooks with MyST Markdown</a></li>
diff --git a/scalingtest/_build/html/searchindex.js b/scalingtest/_build/html/searchindex.js
index deed573de1f99ae9f338aae593ec50e70ca12c80..0ca16e6d3771b5a16b0e4afd91a15741da911d94 100644
--- a/scalingtest/_build/html/searchindex.js
+++ b/scalingtest/_build/html/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"alltitles": {"": [[2, "id1"]], "1. Stress Test": [[7, "stress-test"]], "2. Weak Scaling": [[7, "weak-scaling"]], "3. Strong Scaling": [[7, "strong-scaling"]], "An example cell": [[10, "an-example-cell"]], "Arbor benchmarking on SuperComputers": [[0, null]], "Boundary Condition Verification": [[2, "boundary-condition-verification"]], "Citations": [[9, "citations"]], "Code blocks and outputs": [[11, "code-blocks-and-outputs"]], "Content with notebooks": [[11, null]], "Create a notebook with MyST Markdown": [[10, "create-a-notebook-with-myst-markdown"]], "Derivative (Marginal Speedup Gain)": [[2, "derivative-marginal-speedup-gain"], [2, "id4"]], "Energy Analysis": [[0, "energy-analysis"]], "Energy Modelling": [[1, null]], "Example:": [[2, "example"]], "GPU benchmarking": [[5, "gpu-benchmarking"]], "HPC Benchmarking": [[7, null]], "Implications:": [[2, "implications"]], "Initial Linear Growth": [[2, "initial-linear-growth"]], "Key Findings:": [[3, "key-findings"]], "Key Observations:": [[3, "key-observations"]], "Key Properties:": [[2, "key-properties"], [2, "id5"]], "Learn more": [[9, "learn-more"]], 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"practic": 0, "predict": [3, 10], "preprocess": [1, 2, 4, 5], "presenc": 11, "prevent": 6, "print": [1, 2, 3, 11], "problem": 8, "processor": 8, "produc": 0, "product": 1, "progress": 6, "project": 2, "prop_cycl": 12, "proper": 1, "properli": 10, "proportion": 8, "propos": 3, "provid": [0, 3], "purpos": 10, "push": 8, "pwd": 9, "px": [0, 1, 4, 6, 9, 13], "py": [9, 13], "pyarbortest": [9, 13], "pyechart": 6, "pyplot": [0, 1, 2, 4, 5, 6, 9, 12, 13], "python3": [9, 13], "quad": 3, "queri": 6, "quickli": 3, "quot": [9, 13], "quotechar": [9, 13], "r": [1, 4], "ramsai": 10, "randn": 12, "random": 12, "rang": [0, 1, 4, 5, 12], "rank": 8, "rate": [0, 3], "rather": 0, "ratio": 8, "rcparam": 12, "re": 4, "reach": 3, "read_csv": [0, 1, 2, 4, 5, 6, 9, 13], "reader": [9, 13], "real": [2, 3], "realist": 3, "realistic_speedup": 3, "realli": 8, "recent": [1, 3, 9, 13], "red": [0, 1, 5, 6, 9], "reduc": 8, "refer": 10, "region": 8, "regular": 10, "rel": [1, 2, 4, 5], "relationship": 4, "reliabl": 8, 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"unrealist": 3, "up": [8, 9, 13], "updat": [1, 4, 5, 6, 9, 13], "update_ebrains_layout": 13, "update_layout": [0, 1, 4, 5, 6, 9, 13], "update_trac": [9, 13], "update_xax": [1, 4, 5, 6], "update_yax": [1, 4, 5, 6], "us": [0, 2, 4, 6, 8, 10, 11], "usecol": [9, 13], "usual": 8, "v": [1, 4, 5, 6, 9, 13], "valid": [1, 3], "valu": [0, 1, 2, 4, 5, 6, 9, 13], "value_nam": 6, "var_nam": 6, "variat": 10, "vbt": 6, "verbos": [9, 13], "veri": 6, "vertical_spac": 1, "viridi": 1, "w": [1, 2, 5, 9], "w_": 0, "w_i": 0, "want": [6, 12], "watt": [1, 9], "we": [0, 4, 5], "weakli": 8, "weather": 8, "weigh": 8, "weight_efficiency_init": 0, "weight_efficiency_simul": 0, "weight_init": 0, "weight_sim": 0, "weight_speedup_init": 0, "weight_speedup_simul": 0, "well": [7, 8, 12], "wendi": 10, "what": 8, "when": [0, 3, 8, 10, 11], "where": [0, 3], "wherea": [0, 10], "whether": [9, 10, 13], "which": [0, 2, 8, 11], "why": 8, "width": [0, 1, 4, 5], "without": 3, "work": [0, 6, 12], "workload": [3, 8], "world": 3, "wors": 3, "would": [3, 8], "write": [10, 11], "written": [10, 11], "x": [0, 1, 2, 4, 5, 6, 9, 13], "x0": 2, "xanchor": [0, 1, 4, 5, 6, 9, 13], "xaxi": [0, 1, 4, 5, 6], "xaxis_opt": 6, "xaxis_titl": [0, 1, 4, 5, 6, 9, 13], "xaxis_typ": [1, 6], "xlabel": [1, 2], "xscale": 2, "xtitl": [0, 13], "y": [0, 1, 4, 5, 6, 9, 13], "y_titl": 1, "yanchor": [1, 4, 6], "yaxi": [0, 1, 4, 5, 6], "yaxis_opt": 6, "yaxis_titl": [0, 1, 4, 5, 6, 9, 13], "yaxis_typ": [1, 6], "yield": 8, "ylabel": [1, 2], "you": [6, 7, 10, 11, 12], "your": [10, 11, 12], "yscale": 2, "ytitl": 13, "zip": [0, 6], "\u03b1": 1, "\u03b1_fit": 1, "\u03b2": 1, "\u03b2_fit": 1, "\u03b3": 1}, "titles": ["Benchmarking the Scalability of Arbor on GPU-Based Systems (4 GPUs per Node)", "Arbor benchmarking on SuperComputers", "Energy Modelling", "Performance modelling", "Strong Scaling Performance Analysis", "Plots of energy and energy speed up compunsiation", "Benchmarking on GPUs", "Welcome to your Jupyter Book", "HPC Benchmarking", "&lt;no title&gt;", "Markdown Files", "Notebooks with MyST Markdown", "Content with notebooks", "&lt;no title&gt;"], "titleterms": {"1": [0, 8], "2": [0, 8], "3": [0, 8], "4": 0, "add": 11, "an": 11, "analysi": [0, 1, 3, 4], "arbor": [0, 1], "axi": 6, "b": 3, "base": 0, "behavior": 0, "benchmark": [0, 1, 6, 8], "block": 12, "book": 7, "boundari": 3, "breakdown": 0, "calcul": 0, "cell": 11, "citat": 10, "code": 12, "combin": 0, "compon": 0, "compunsi": 5, "comput": 0, "conclus": 0, "condit": 3, "configur": 0, "constraint": 3, "content": 12, "creat": 11, "data": 0, "definit": [0, 3], "deriv": 3, "diminish": 0, "direct": 10, "discuss": 0, "effici": 0, "energi": [1, 2, 5], "exampl": [3, 11], "file": 10, "find": [0, 4], "formul": 0, "gain": 3, "gener": 0, "gpu": [0, 6], "growth": 3, "hpc": 8, "i": 10, "implement": 0, "implic": 3, "initi": [0, 3], "introduct": 0, "jupyt": 7, "kei": [0, 3, 4], "learn": 10, "leq": 3, "linear": 3, "log": [1, 6], "margin": 3, "markdown": [10, 11, 12], "mathemat": 0, "matter": 3, "maximum": 3, "metadata": 11, "metric": 0, "model": [2, 3], "more": 10, "myst": [10, 11, 12], "need": 6, "node": 0, "notebook": [11, 12], "observ": [0, 4], "output": 12, "parallel": [0, 3], "paramet": 3, "per": 0, "perform": [3, 4], "phase": 0, "plot": [1, 5], "practic": 3, "properti": [0, 3], "python": 3, "quickli": 11, "result": 0, "return": 0, "review": 6, "role": 10, "run": 6, "sampl": 10, "scalabl": 0, "scale": [0, 4, 8], "script": 6, "self": 6, "simul": [0, 4], "slurm": 6, "speed": [0, 5], "speedup": [0, 1, 3, 4], "stress": 8, "strong": [4, 8], "supercomput": 1, "system": 0, "tabl": 0, "test": 8, "theoret": [0, 3], "time": [0, 4], "todo": [0, 6], "trend": 0, "two": 0, "up": [0, 5], "us": 1, "v": 0, "verif": 3, "weak": 8, "weight": 0, "welcom": 7, "what": 10, "why": 3, "yaml": 11, "your": 7}})
\ No newline at end of file
diff --git a/scalingtest/_config.yml b/scalingtest/_config.yml
index 8b8b4eb450083eabcc624696553a450c7ec10ff3..e840e9e9f924daa2150fbb942dec22aee4126815 100644
--- a/scalingtest/_config.yml
+++ b/scalingtest/_config.yml
@@ -6,7 +6,6 @@ author: Ebrains2.0
 logo: ebrainslogo.jpeg
 
 # Force re-execution of notebooks on each build.
-# See https://jupyterbook.org/content/execute.html
 execute:
   execute_notebooks: force
 
@@ -15,18 +14,37 @@ latex:
   latex_documents:
     targetname: book.tex
 
+
+
 # Add a bibtex file so that we can create citations
 bibtex_bibfiles:
   - references.bib
 
-# Information about where the book exists on the web
+parse:
+  myst_enable_extensions:
+    - attrs_inline
+    - colon_fence
+    - deflist
+    #- dollarmath
+    - fieldlist
+    - html_admonition
+    - html_image
+    - linkify
+    - replacements
+    - smartquotes
+    - strikethrough
+    - substitution
+    - tasklist
+    - amsmath
+
 repository:
-  url: https://github.com/executablebooks/jupyter-book  # Online location of your book
-  path_to_book: docs  # Optional path to your book, relative to the repository root
-  branch: master  # Which branch of the repository should be used when creating links (optional)
+  url: https://github.com/executablebooks/jupyter-book
+  path_to_book: docs
+  branch: master
 
-# Add GitHub buttons to your book
-# See https://jupyterbook.org/customize/config.html#add-a-link-to-your-repository
 html:
   use_issues_button: true
   use_repository_button: true
+
+launch_buttons:
+  thebe: false
diff --git a/scalingtest/_toc.yml b/scalingtest/_toc.yml
index fcf951044c559c5f01f7221504801c2fe5112955..42c353c93e192d7c72a9394b7ac0ecb36440b6d0 100644
--- a/scalingtest/_toc.yml
+++ b/scalingtest/_toc.yml
@@ -8,5 +8,6 @@ chapters:
 - file: introtobenchmarking
 - file: basicPlotting
 - file: gpuPerformanceTest
+- file: 4gpusPerNode
 - file: ArborJuwels
 - file: markdown-notebooks
diff --git a/scalingtest/basicPlotting.ipynb b/scalingtest/basicPlotting.ipynb
index ba2a6379aeb231c526232aac98eabecbc0b1e19c..77ca8b4a533a9fee21f358deaed10298a237b35a 100644
--- a/scalingtest/basicPlotting.ipynb
+++ b/scalingtest/basicPlotting.ipynb
@@ -3,7 +3,13 @@
   {
    "cell_type": "markdown",
    "id": "6d42adb4-b890-418a-a655-919046f3bcb9",
-   "metadata": {},
+   "metadata": {
+    "editable": true,
+    "slideshow": {
+     "slide_type": ""
+    },
+    "tags": []
+   },
    "source": [
     "# Strong Scaling Performance Analysis\n",
     "\n",
@@ -80,9 +86,11 @@
    "execution_count": 53,
    "id": "ebf89efa-3611-4a4c-b584-e4b6efa34d23",
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    }
+    "editable": true,
+    "slideshow": {
+     "slide_type": ""
+    },
+    "tags": []
    },
    "outputs": [
     {
diff --git a/scalingtest/efficiency_heatmap.html b/scalingtest/efficiency_heatmap.html
new file mode 100644
index 0000000000000000000000000000000000000000..ff54162263dc822b9b4c2af1b7717c160e6b191d
--- /dev/null
+++ b/scalingtest/efficiency_heatmap.html
@@ -0,0 +1,401 @@
+<!DOCTYPE html>
+<html>
+<head>
+    <meta charset="UTF-8">
+    <title>Awesome-pyecharts</title>
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+            "label": {
+                "show": true,
+                "color": "black",
+                "margin": 8,
+                "formatter": "{@[2]:.2f}",
+                "valueAnimation": false
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+            "zlevel": 0,
+            "z": 2,
+            "rippleEffect": {
+                "show": true,
+                "brushType": "stroke",
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+    "legend": [
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+            "padding": 5,
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+            "itemWidth": 25,
+            "itemHeight": 14,
+            "backgroundColor": "transparent",
+            "borderColor": "#ccc",
+            "borderRadius": 0,
+            "pageButtonItemGap": 5,
+            "pageButtonPosition": "end",
+            "pageFormatter": "{current}/{total}",
+            "pageIconColor": "#2f4554",
+            "pageIconInactiveColor": "#aaa",
+            "pageIconSize": 15,
+            "animationDurationUpdate": 800,
+            "selector": false,
+            "selectorPosition": "auto",
+            "selectorItemGap": 7,
+            "selectorButtonGap": 10
+        }
+    ],
+    "tooltip": {
+        "show": true,
+        "trigger": "item",
+        "triggerOn": "mousemove|click",
+        "axisPointer": {
+            "type": "line"
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+        "alwaysShowContent": false,
+        "showDelay": 0,
+        "hideDelay": 100,
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+        "confine": false,
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+        "textStyle": {
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+        "padding": 5,
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+            "gridIndex": 0,
+            "inverse": false,
+            "offset": 0,
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+            "animationDuration": 1000,
+            "animationEasing": "cubicOut",
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+            "animationEasingUpdate": "cubicOut",
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diff --git a/scalingtest/gpuPerformanceTest.ipynb b/scalingtest/gpuPerformanceTest.ipynb
index 14f0011b13f71770e6be33a03aad71fefb3ddeb8..1ca9cb128840e568b6ef0fe5fb5285173ddd1fe0 100644
Binary files a/scalingtest/gpuPerformanceTest.ipynb and b/scalingtest/gpuPerformanceTest.ipynb differ
diff --git a/scalingtest/introtobenchmarking.ipynb b/scalingtest/introtobenchmarking.ipynb
index 90cc26e1c9429a7e3ba471cfa19368b395c24470..4937b1829d3824068dd6825d90774e63efe4f04c 100644
--- a/scalingtest/introtobenchmarking.ipynb
+++ b/scalingtest/introtobenchmarking.ipynb
@@ -3,7 +3,13 @@
   {
    "cell_type": "markdown",
    "id": "bc422a75-2f81-4579-aa1d-13fca18b5ddf",
-   "metadata": {},
+   "metadata": {
+    "editable": true,
+    "slideshow": {
+     "slide_type": ""
+    },
+    "tags": []
+   },
    "source": [
     "# HPC Benchmarking\n",
     "\n",