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atml-ati
pySDC
Commits
dc3eed1b
Unverified
Commit
dc3eed1b
authored
4 months ago
by
Thomas Baumann
Committed by
GitHub
4 months ago
Browse files
Options
Downloads
Patches
Plain Diff
Small refactor of spectral helper to prepare for 3D (#541)
parent
c3598e54
Branches
Branches containing commit
Tags
v5.5.3
Tags containing commit
No related merge requests found
Pipeline
#266120
passed
4 months ago
Stage: benchmark
Changes
1
Pipelines
3
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1 changed file
pySDC/helpers/spectral_helper.py
+38
-116
38 additions, 116 deletions
pySDC/helpers/spectral_helper.py
with
38 additions
and
116 deletions
pySDC/helpers/spectral_helper.py
+
38
−
116
View file @
dc3eed1b
...
...
@@ -1853,6 +1853,26 @@ class SpectralHelper:
"""
return
M
.
tocsc
()[
self
.
local_slice
[
axis
],
self
.
local_slice
[
axis
]]
def
expand_matrix_ND
(
self
,
matrix
,
aligned
):
sp
=
self
.
sparse_lib
axes
=
np
.
delete
(
np
.
arange
(
self
.
ndim
),
aligned
)
ndim
=
len
(
axes
)
+
1
if
ndim
==
1
:
return
matrix
elif
ndim
==
2
:
axis
=
axes
[
0
]
I1D
=
sp
.
eye
(
self
.
axes
[
axis
].
N
)
mats
=
[
None
]
*
ndim
mats
[
aligned
]
=
self
.
get_local_slice_of_1D_matrix
(
matrix
,
aligned
)
mats
[
axis
]
=
self
.
get_local_slice_of_1D_matrix
(
I1D
,
axis
)
return
sp
.
kron
(
*
mats
)
else
:
raise
NotImplementedError
(
f
'
Matrix expansion not implemented for
{
ndim
}
dimensions!
'
)
def
get_filter_matrix
(
self
,
axis
,
**
kwargs
):
"""
Get bandpass filter along `axis`. See the documentation `get_filter_matrix` in the 1D bases for what kwargs are
...
...
@@ -1878,31 +1898,10 @@ class SpectralHelper:
Returns:
sparse differentiation matrix
"""
sp
=
self
.
sparse_lib
ndim
=
self
.
ndim
if
ndim
==
1
:
D
=
self
.
axes
[
0
].
get_differentiation_matrix
(
**
kwargs
)
elif
ndim
==
2
:
for
axis
in
axes
:
axis2
=
(
axis
+
1
)
%
ndim
D1D
=
self
.
axes
[
axis
].
get_differentiation_matrix
(
**
kwargs
)
if
len
(
axes
)
>
1
:
I1D
=
sp
.
eye
(
self
.
axes
[
axis2
].
N
)
else
:
I1D
=
self
.
axes
[
axis2
].
get_Id
()
mats
=
[
None
]
*
ndim
mats
[
axis
]
=
self
.
get_local_slice_of_1D_matrix
(
D1D
,
axis
)
mats
[
axis2
]
=
self
.
get_local_slice_of_1D_matrix
(
I1D
,
axis2
)
if
axis
==
axes
[
0
]:
D
=
sp
.
kron
(
*
mats
)
else
:
D
=
D
@
sp
.
kron
(
*
mats
)
else
:
raise
NotImplementedError
(
f
'
Differentiation matrix not implemented for
{
ndim
}
dimension!
'
)
D
=
self
.
expand_matrix_ND
(
self
.
axes
[
axes
[
0
]].
get_differentiation_matrix
(
**
kwargs
),
axes
[
0
])
for
axis
in
axes
[
1
:]:
_D
=
self
.
axes
[
axis
].
get_differentiation_matrix
(
**
kwargs
)
D
=
D
@
self
.
expand_matrix_ND
(
_D
,
axis
)
return
D
...
...
@@ -1916,31 +1915,10 @@ class SpectralHelper:
Returns:
sparse integration matrix
"""
sp
=
self
.
sparse_lib
ndim
=
len
(
self
.
axes
)
if
ndim
==
1
:
S
=
self
.
axes
[
0
].
get_integration_matrix
()
elif
ndim
==
2
:
for
axis
in
axes
:
axis2
=
(
axis
+
1
)
%
ndim
S1D
=
self
.
axes
[
axis
].
get_integration_matrix
()
if
len
(
axes
)
>
1
:
I1D
=
sp
.
eye
(
self
.
axes
[
axis2
].
N
)
else
:
I1D
=
self
.
axes
[
axis2
].
get_Id
()
mats
=
[
None
]
*
ndim
mats
[
axis
]
=
self
.
get_local_slice_of_1D_matrix
(
S1D
,
axis
)
mats
[
axis2
]
=
self
.
get_local_slice_of_1D_matrix
(
I1D
,
axis2
)
if
axis
==
axes
[
0
]:
S
=
sp
.
kron
(
*
mats
)
else
:
S
=
S
@
sp
.
kron
(
*
mats
)
else
:
raise
NotImplementedError
(
f
'
Integration matrix not implemented for
{
ndim
}
dimension!
'
)
S
=
self
.
expand_matrix_ND
(
self
.
axes
[
axes
[
0
]].
get_integration_matrix
(),
axes
[
0
])
for
axis
in
axes
[
1
:]:
_S
=
self
.
axes
[
axis
].
get_integration_matrix
()
S
=
S
@
self
.
expand_matrix_ND
(
_S
,
axis
)
return
S
...
...
@@ -1951,27 +1929,10 @@ class SpectralHelper:
Returns:
sparse identity matrix
"""
sp
=
self
.
sparse_lib
ndim
=
self
.
ndim
I
=
sp
.
eye
(
np
.
prod
(
self
.
init
[
0
][
1
:]),
dtype
=
complex
)
if
ndim
==
1
:
I
=
self
.
axes
[
0
].
get_Id
()
elif
ndim
==
2
:
for
axis
in
range
(
ndim
):
axis2
=
(
axis
+
1
)
%
ndim
I1D
=
self
.
axes
[
axis
].
get_Id
()
I1D2
=
sp
.
eye
(
self
.
axes
[
axis2
].
N
)
mats
=
[
None
]
*
ndim
mats
[
axis
]
=
self
.
get_local_slice_of_1D_matrix
(
I1D
,
axis
)
mats
[
axis2
]
=
self
.
get_local_slice_of_1D_matrix
(
I1D2
,
axis2
)
I
=
I
@
sp
.
kron
(
*
mats
)
else
:
raise
NotImplementedError
(
f
'
Identity matrix not implemented for
{
ndim
}
dimension!
'
)
I
=
self
.
expand_matrix_ND
(
self
.
axes
[
0
].
get_Id
(),
0
)
for
axis
in
range
(
1
,
self
.
ndim
):
_I
=
self
.
axes
[
axis
].
get_Id
()
I
=
I
@
self
.
expand_matrix_ND
(
_I
,
axis
)
return
I
def
get_Dirichlet_recombination_matrix
(
self
,
axis
=-
1
):
...
...
@@ -1984,26 +1945,8 @@ class SpectralHelper:
Returns:
sparse matrix
"""
sp
=
self
.
sparse_lib
ndim
=
len
(
self
.
axes
)
if
ndim
==
1
:
C
=
self
.
axes
[
0
].
get_Dirichlet_recombination_matrix
()
elif
ndim
==
2
:
axis2
=
(
axis
+
1
)
%
ndim
C1D
=
self
.
axes
[
axis
].
get_Dirichlet_recombination_matrix
()
I1D
=
self
.
axes
[
axis2
].
get_Id
()
mats
=
[
None
]
*
ndim
mats
[
axis
]
=
self
.
get_local_slice_of_1D_matrix
(
C1D
,
axis
)
mats
[
axis2
]
=
self
.
get_local_slice_of_1D_matrix
(
I1D
,
axis2
)
C
=
sp
.
kron
(
*
mats
)
else
:
raise
NotImplementedError
(
f
'
Basis change matrix not implemented for
{
ndim
}
dimension!
'
)
return
C
return
self
.
expand_matrix_ND
(
C1D
,
axis
)
def
get_basis_change_matrix
(
self
,
axes
=
None
,
**
kwargs
):
"""
...
...
@@ -2018,30 +1961,9 @@ class SpectralHelper:
"""
axes
=
tuple
(
-
i
-
1
for
i
in
range
(
self
.
ndim
))
if
axes
is
None
else
axes
sp
=
self
.
sparse_lib
ndim
=
len
(
self
.
axes
)
if
ndim
==
1
:
C
=
self
.
axes
[
0
].
get_basis_change_matrix
(
**
kwargs
)
elif
ndim
==
2
:
for
axis
in
axes
:
axis2
=
(
axis
+
1
)
%
ndim
C1D
=
self
.
axes
[
axis
].
get_basis_change_matrix
(
**
kwargs
)
if
len
(
axes
)
>
1
:
I1D
=
sp
.
eye
(
self
.
axes
[
axis2
].
N
)
else
:
I1D
=
self
.
axes
[
axis2
].
get_Id
()
mats
=
[
None
]
*
ndim
mats
[
axis
]
=
self
.
get_local_slice_of_1D_matrix
(
C1D
,
axis
)
mats
[
axis2
]
=
self
.
get_local_slice_of_1D_matrix
(
I1D
,
axis2
)
if
axis
==
axes
[
0
]:
C
=
sp
.
kron
(
*
mats
)
else
:
C
=
C
@
sp
.
kron
(
*
mats
)
else
:
raise
NotImplementedError
(
f
'
Basis change matrix not implemented for
{
ndim
}
dimension!
'
)
C
=
self
.
expand_matrix_ND
(
self
.
axes
[
axes
[
0
]].
get_basis_change_matrix
(
**
kwargs
),
axes
[
0
])
for
axis
in
axes
[
1
:]:
_C
=
self
.
axes
[
axis
].
get_basis_change_matrix
(
**
kwargs
)
C
=
C
@
self
.
expand_matrix_ND
(
_C
,
axis
)
return
C
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