Merge branch 'sa-CMake+Rust2023' into '2023'

{GCCcore} CMake and Rust

See merge request software-team/easybuild!1360

Golden_Repo/b/bzip2/bzip2-1.0.8-GCCcore-11.3.0.eb

+name = 'bzip2'
+version = '1.0.8'
+
+homepage = 'https://sourceware.org/bzip2'
+description = """
+ bzip2 is a freely available, patent free, high-quality data compressor. It
+ typically compresses files to within 10% to 15% of the best available
+ techniques (the PPM family of statistical compressors), whilst being around
+ twice as fast at compression and six times faster at decompression.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://sourceware.org/pub/%(name)s/']
+sources = [SOURCE_TAR_GZ]
+patches = ['bzip2-%(version)s-pkgconfig.patch']
+checksums = [
+    'ab5a03176ee106d3f0fa90e381da478ddae405918153cca248e682cd0c4a2269',  # bzip2-1.0.8.tar.gz
+    '9299e8ee4d014ea973777b6ea90661fe329dfa991f822add4c763ea9ddb9aab1',  # bzip2-1.0.8-pkgconfig.patch
+]
+
+builddependencies = [
+    ('binutils', '2.38'),
+]
+
+moduleclass = 'tools'

Golden_Repo/b/bzip2/bzip2-1.0.8-pkgconfig.patch

+#- Adds a pkgconfig/bzip2.pc file 
+#
+# author: Jiri Furst <jiri.furst@gmail.com>
+# inspired by OpenSUSE patch by Stanislav Brabec <sbrabec@suse.cz>, see
+# http://ftp.suse.com/pub/people/sbrabec/bzip2/
+diff -Nau bzip2-1.0.8.orig/bzip2.pc.in bzip2-1.0.6/bzip2.pc.in
+--- bzip2-1.0.8.orig/bzip2.pc.in	1970-01-01 01:00:00.000000000 +0100
++++ bzip2-1.0.8/bzip2.pc.in	2019-05-01 11:47:29.795517973 +0200
+@@ -0,0 +1,11 @@
++exec_prefix=${prefix}
++bindir=${exec_prefix}/bin
++libdir=${exec_prefix}/lib
++includedir=${prefix}/include
++
++Name: bzip2
++Description: Lossless, block-sorting data compression
++Version: 1.0.8
++Libs: -L${libdir} -lbz2
++Cflags: -I${includedir}
++
+diff -Nau bzip2-1.0.8.orig/Makefile bzip2-1.0.6/Makefile
+--- bzip2-1.0.8.orig/Makefile	2019-05-01 11:28:04.788206974 +0200
++++ bzip2-1.0.8/Makefile	2019-05-01 11:46:20.911324226 +0200
+@@ -107,6 +107,9 @@
+ 	echo ".so man1/bzgrep.1" > $(PREFIX)/man/man1/bzfgrep.1
+ 	echo ".so man1/bzmore.1" > $(PREFIX)/man/man1/bzless.1
+ 	echo ".so man1/bzdiff.1" > $(PREFIX)/man/man1/bzcmp.1
++	if ( test ! -d $(PREFIX)/lib/pkgconfig ) ; then mkdir -p $(PREFIX)/lib/pkgconfig ; fi
++	echo "prefix=$(PREFIX)" > $(PREFIX)/lib/pkgconfig/bzip2.pc
++	cat bzip2.pc.in >> $(PREFIX)/lib/pkgconfig/bzip2.pc
+ 
+ clean: 
+ 	rm -f *.o libbz2.a bzip2 bzip2recover \

Golden_Repo/c/CMake/CMake-3.23.1-GCCcore-11.3.0.eb

+name = 'CMake'
+version = '3.23.1'
+
+homepage = 'https://www.cmake.org'
+
+description = """
+ CMake, the cross-platform, open-source build system.  CMake is a family of
+ tools designed to build, test and package software.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://www.cmake.org/files/v%(version_major_minor)s']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['33fd10a8ec687a4d0d5b42473f10459bb92b3ae7def2b745dc10b192760869f3']
+
+builddependencies = [
+    ('binutils', '2.38'),
+]
+
+dependencies = [
+    ('ncurses', '6.3'),
+    ('zlib', '1.2.12'),
+    ('bzip2', '1.0.8'),
+    ('cURL', '7.83.0'),
+    ('libarchive', '3.6.1'),
+    ('OpenSSL', '1.1', '', True),
+]
+
+moduleclass = 'devel'

Golden_Repo/c/cURL/cURL-7.83.0-GCCcore-11.3.0.eb

+easyblock = 'ConfigureMake'
+
+name = 'cURL'
+version = '7.83.0'
+
+homepage = 'https://curl.haxx.se'
+
+description = """
+ libcurl is a free and easy-to-use client-side URL transfer library,
+ supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP,
+ LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP.
+ libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP
+ form based upload, proxies, cookies, user+password authentication (Basic,
+ Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling
+ and more.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://curl.haxx.se/download/']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['c0e64302a33d2fb79e0fc4e674260a22941e92ee2f11b894bf94d32b8f5531af']
+
+builddependencies = [
+    ('binutils', '2.38'),
+]
+
+dependencies = [
+    ('zlib', '1.2.12'),
+    ('OpenSSL', '1.1', '', True),
+]
+
+configopts = '--with-zlib '
+configopts += '--with-ssl=$EBROOTOPENSSL '
+
+modextravars = {'CURL_INCLUDES': '%(installdir)s/include'}
+
+sanity_check_paths = {
+    'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT],
+    'dirs': ['lib/pkgconfig', 'include/curl'],
+}
+
+moduleclass = 'tools'

Golden_Repo/g/GMP/GMP-6.2.1-GCCcore-11.3.0.eb

+easyblock = 'ConfigureMake'
+
+name = 'GMP'
+version = '6.2.1'
+
+homepage = 'https://gmplib.org/'
+description = """
+ GMP is a free library for arbitrary precision arithmetic, operating on signed
+ integers, rational numbers, and floating point numbers.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'precise': True, 'pic': True}
+
+source_urls = ['https://ftp.gnu.org/gnu/%(namelower)s']
+sources = [SOURCELOWER_TAR_BZ2]
+checksums = ['eae9326beb4158c386e39a356818031bd28f3124cf915f8c5b1dc4c7a36b4d7c']
+
+builddependencies = [
+    ('Autotools', '20220317'),
+    ('binutils', '2.38'),
+]
+
+# enable C++ interface
+configopts = '--enable-cxx'
+
+# copy libgmp.so* to <installdir>/lib to make sure that it is picked up by tests
+# when EasyBuild is configured with --rpath, and clean up afterwards (let 'make install' do its job)
+pretestopts = "mkdir -p %%(installdir)s/lib && cp -a .libs/libgmp.%s* %%(installdir)s/lib && " % SHLIB_EXT
+testopts = " && rm -r %(installdir)s/lib"
+
+runtest = 'check'
+
+sanity_check_paths = {
+    'files': ['lib/lib%s.%s' % (l, e) for l in ['gmp', 'gmpxx'] for e in [SHLIB_EXT, 'a']] +
+             ['include/gmp.h', 'include/gmpxx.h'],
+    'dirs': ['share'],
+}
+
+moduleclass = 'math'

Golden_Repo/g/git/git-2.36.0-GCCcore-11.3.0-nodocs.eb

+##
+# Author:    Robert Mijakovic <robert.mijakovic@lxp.lu>
+##
+# updated to 2.33.1
+# J. Sassmannshausen / GSTT
+
+easyblock = 'ConfigureMake'
+
+name = 'git'
+version = '2.36.0'
+versionsuffix = '-nodocs'
+
+homepage = 'https://git-scm.com/'
+description = """Git is a free and open source distributed version control system designed
+to handle everything from small to very large projects with speed and efficiency."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://github.com/git/git/archive']
+sources = ['v%(version)s.tar.gz']
+checksums = ['59dbc158dce293798570166fe7acfe225514f2868bc2d6e25c1a5a00c4ac0888']
+
+builddependencies = [
+    ('binutils', '2.38'),
+    ('Autotools', '20220317'),
+]
+
+dependencies = [
+    ('cURL', '7.83.0'),
+    ('expat', '2.4.8'),
+    ('gettext', '0.21'),
+    ('Perl', '5.34.1'),
+    ('OpenSSL', '1.1', '', True),
+]
+
+preconfigopts = 'make configure && '
+
+# Work around git build system bug.  If LIBS contains -lpthread, then configure
+# will not append -lpthread to LDFLAGS, but Makefile ignores LIBS.
+configopts = "--with-perl=${EBROOTPERL}/bin/perl --enable-pthreads='-lpthread'"
+
+sanity_check_paths = {
+    'files': ['bin/git'],
+    'dirs': ['libexec/git-core', 'share'],
+}
+
+moduleclass = 'tools'

Golden_Repo/l/libarchive/libarchive-3.6.1-GCCcore-11.3.0.eb

+easyblock = 'ConfigureMake'
+
+name = 'libarchive'
+version = '3.6.1'
+
+homepage = 'https://www.libarchive.org/'
+
+description = """
+ Multi-format archive and compression library
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://www.libarchive.org/downloads/']
+sources = [SOURCE_TAR_GZ]
+checksums = ['c676146577d989189940f1959d9e3980d28513d74eedfbc6b7f15ea45fe54ee2']
+
+builddependencies = [
+    ('binutils', '2.38'),
+]
+
+dependencies = [
+    ('zlib', '1.2.12'),
+    ('XZ', '5.2.5'),
+    ('OpenSSL', '1.1', '', True),
+]
+
+sanity_check_paths = {
+    'files': ['include/archive.h', 'lib/libarchive.%s' % SHLIB_EXT],
+    'dirs': ['bin', 'share/man/man3'],
+}
+
+moduleclass = 'tools'

Golden_Repo/l/libffi/libffi-3.4.2-GCCcore-11.3.0.eb

+easyblock = 'ConfigureMake'
+
+name = 'libffi'
+version = '3.4.2'
+
+homepage = 'https://sourceware.org/libffi/'
+description = """The libffi library provides a portable, high level programming interface to
+ various calling conventions. This allows a programmer to call any function
+ specified by a call interface description at run-time."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/libffi/libffi/releases/download/v3.4.2/']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['540fb721619a6aba3bdeef7d940d8e9e0e6d2c193595bc243241b77ff9e93620']
+
+builddependencies = [
+    ('binutils', '2.38'),
+]
+
+configopts = '--disable-exec-static-tramp '
+
+sanity_check_paths = {
+    'files': ['lib/libffi.a', 'lib/libffi.%s' % SHLIB_EXT],
+    'dirs': ['include', 'share'],
+}
+
+moduleclass = 'lib'

Golden_Repo/r/Rust/Rust-1.60.0-GCCcore-11.3.0.eb

+easyblock = 'ConfigureMake'
+
+name = 'Rust'
+version = '1.60.0'
+
+homepage = 'https://www.rust-lang.org'
+description = """Rust is a systems programming language that runs blazingly fast, prevents segfaults,
+ and guarantees thread safety."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://static.rust-lang.org/dist/']
+sources = ['rustc-%(version)s-src.tar.gz']
+patches = ['Rust-1.60_sysroot-fix-interpreter.patch']
+checksums = [
+    '20ca826d1cf674daf8e22c4f8c4b9743af07973211c839b85839742314c838b7',  # rustc-1.60.0-src.tar.gz
+    'b59ed4c2591fc9098277299be21dd6752654f6f193d8652b7d21cb0fa0dd8716',  # Rust-1.60_sysroot-fix-interpreter.patch
+]
+
+builddependencies = [
+    ('binutils', '2.38'),
+    ('CMake', '3.23.1'),
+    ('Python', '3.10.4', '-bare'),
+    ('pkgconf', '1.8.0'),
+]
+
+dependencies = [
+    ('OpenSSL', '1.1', '', True),
+]
+
+configopts = "--enable-extended --sysconfdir=%(installdir)s/etc "
+
+# avoid build dependency on Ninja, which requires Python,
+# since Rust is a build dependency for cryptography that is included with Python
+configopts += "--set=llvm.ninja=false "
+
+# Use ./x.py to bootstrap so that options like -j N are correctly passed through
+# see: https://rustc-dev-guide.rust-lang.org/building/how-to-build-and-run.html#what-is-xpy
+# (ConfigureMake already adds `-j %(parallel)s` to the `build_cmd`)
+build_cmd = "./x.py build"
+install_cmd = "./x.py install -j %(parallel)s"
+
+# avoid failure when home directory is an NFS mount,
+# see https://github.com/rust-lang/cargo/issues/6652
+prebuildopts = "export CARGO_HOME=%(builddir)s/cargo && "
+preinstallopts = prebuildopts
+
+sanity_check_paths = {
+    'files': ['bin/cargo', 'bin/rustc', 'bin/rustdoc'],
+    'dirs': ['lib/rustlib', 'share/doc', 'share/man'],
+}
+
+sanity_check_commands = [
+    "cargo --version",
+    "rustc --version",
+]
+
+moduleclass = 'lang'

Golden_Repo/r/Rust/Rust-1.60_sysroot-fix-interpreter.patch

+Use patchelf to fix interpreter of binaries that are used during Rust bootstrap procedure
+when EasyBuild is configured to build in an alternate sysroot
+
+This fixes problems like due to a clash with the interpreter from the host, and a more recent libc.so.6 that's picked up
+from the alternate sysroot:
+error: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.32' not found (required by /tmp/easybuild/build/Rust/1.52.1/GCCcore-10.3.0/rustc-1.52.1-src/build/bootstrap/debug/deps/libproc_macro_error_attr-fbfef320d848b049.so)
+
+author: Kenneth Hoste (HPC-UGent)
+
+--- rustc-1.60.0-src/src/bootstrap/bootstrap.py.orig	2022-06-01 16:35:37.111817747 +0200
++++ rustc-1.60.0-src/src/bootstrap/bootstrap.py	2022-06-01 16:40:27.769571474 +0200
+@@ -671,6 +671,18 @@
+         if ostype != "Linux":
+             return
+ 
++        sysroot = os.getenv("EASYBUILD_SYSROOT")
++        if sysroot and not fname.endswith(".so"):
++            # determine patch to interpreter in host via output produced by 'file -b /bin/bash'
++            readelf_out = subprocess.check_output(['readelf', '-l', '/bin/bash']).decode('ascii', 'ignore').strip()
++            regex = re.compile('.*program interpreter: ([^\]]+)', re.M)
++            res = regex.search(readelf_out)
++            interpreter_path = os.path.join(sysroot, res.group(1).lstrip('/'))
++            if not os.path.exists(interpreter_path):
++                raise Exception("Derived path to interpreter does not exist: %s" % interpreter_path)
++            cmd = ["patchelf", "--set-interpreter", interpreter_path, fname]
++            run(cmd, verbose=True)
++
+         # If the user has asked binaries to be patched for Nix, then
+         # don't check for NixOS or `/lib`, just continue to the patching.
+         if self.get_toml('patch-binaries-for-nix', 'build') != 'true':

Golden_Repo/s/SQLite/SQLite-3.38.3-GCCcore-11.3.0.eb

+easyblock = 'ConfigureMake'
+
+name = 'SQLite'
+version = '3.38.3'
+local_filename_version = '3380300'
+
+homepage = 'https://www.sqlite.org/'
+description = "SQLite: SQL Database Engine in a C Library"
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://www.sqlite.org/2022/']
+sources = ['%%(namelower)s-autoconf-%s.tar.gz' % (local_filename_version)]
+checksums = ['61f2dd93a2e38c33468b7125967c3218bf9f4dd8365def6025e314f905dc942e']
+
+builddependencies = [
+    ('binutils', '2.38'),
+]
+dependencies = [
+    ('libreadline', '8.1.2'),
+    ('Tcl', '8.6.12'),
+]
+
+# enable additional APIs that provide access to meta-data about tables and queries
+# needed for GDAL when it used as a dep for QGIS
+buildopts = 'CC="$CC" CFLAGS="$CFLAGS -DSQLITE_ENABLE_COLUMN_METADATA"'
+
+
+sanity_check_paths = {
+    'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h',
+              'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT],
+    'dirs': ['lib/pkgconfig'],
+}
+
+sanity_check_commands = [
+    'sqlite3 --version | grep ^%(version)s',
+]
+
+moduleclass = 'devel'

Golden_Repo/t/Tcl/Tcl-8.6.12-GCCcore-11.3.0.eb

+easyblock = 'ConfigureMake'
+
+name = 'Tcl'
+version = '8.6.12'
+
+homepage = 'https://www.tcl.tk/'
+description = """
+ Tcl (Tool Command Language) is a very powerful but easy to learn dynamic
+ programming language, suitable for a very wide range of uses, including web
+ and desktop applications, networking, administration, testing and many more.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s']
+sources = ['%(namelower)s%(version)s-src.tar.gz']
+checksums = ['26c995dd0f167e48b11961d891ee555f680c175f7173ff8cb829f4ebcde4c1a6']
+
+builddependencies = [
+    ('binutils', '2.38'),
+]
+dependencies = [
+    ('zlib', '1.2.12'),
+]
+
+configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"'
+
+runtest = 'test'
+
+start_dir = 'unix'
+
+postinstallcmds = ['ln -s %(installdir)s/bin/tclsh%(version_major)s.%(version_minor)s %(installdir)s/bin/tclsh']
+
+sanity_check_paths = {
+    'files': ['bin/tclsh%(version_major)s.%(version_minor)s', 'bin/tclsh',
+              'include/tcl.h', 'lib/libtcl%%(version_major)s.%%(version_minor)s.%s' % SHLIB_EXT,
+              'lib/tclConfig.sh', 'man/man1/tclsh.1'],
+    'dirs': ['share'],
+}
+
+moduleclass = 'lang'

Golden_Repo/u/UnZip/UnZip-6.0-GCCcore-11.3.0.eb

+easyblock = 'ConfigureMake'
+
+name = 'UnZip'
+version = '6.0'
+
+homepage = 'http://www.info-zip.org/UnZip.html'
+description = """UnZip is an extraction utility for archives compressed
+in .zip format (also called "zipfiles"). Although highly compatible both
+with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's
+own Zip program, our primary objectives have been portability and
+non-MSDOS functionality."""
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+source_urls = ['https://download.sourceforge.net/infozip']
+sources = ['%(namelower)s%(version_major)s%(version_minor)s.tar.gz']
+patches = [
+    'UnZip-%(version)s_various-security-and-other-fixes-from-Ubuntu.patch',
+]
+checksums = [
+    '036d96991646d0449ed0aa952e4fbe21b476ce994abc276e49d30e686708bd37',  # unzip60.tar.gz
+    # UnZip-6.0_various-security-and-other-fixes-from-Ubuntu.patch
+    '06b9307fd5aa018896bd4126818c00c1fd284a06cc3681cf0492f951ebb57ffe',
+]
+
+builddependencies = [
+    ('binutils', '2.38'),
+]
+
+dependencies = [
+    ('bzip2', '1.0.8'),
+]
+
+skipsteps = ['configure']
+
+buildopts = '-f unix/Makefile CC="$CC" D_USE_BZ2=-DUSE_BZIP2 L_BZ2=-lbz2 '
+buildopts += 'LF2="$LDFLAGS" '
+# Note: CF is multiple lines
+buildopts += 'CF="$CFLAGS $CPPFLAGS -I. -DACORN_FTYPE_NFS -DWILD_STOP_AT_DIR -DLARGE_FILE_SUPPORT '
+buildopts += '-DUNICODE_SUPPORT -DUNICODE_WCHAR -DUTF8_MAYBE_NATIVE -DNO_LCHMOD '
+buildopts += '-DDATE_FORMAT=DF_YMD -DUSE_BZIP2 -DIZ_HAVE_UXUIDGID -DNOMEMCPY -DNO_WORKING_ISPRINT" unzips '
+
+installopts = '-f unix/Makefile prefix=%(installdir)s '
+
+sanity_check_paths = {
+    'files': ['bin/unzip', 'bin/zipinfo'],
+    'dirs': ['man/man1']
+}
+
+sanity_check_commands = ["unzip -v"]
+
+moduleclass = 'tools'