To make the CI work in these cases

.gitlab-ci.yml

@@ -45,12 +45,11 @@ check_style:
     - for i in $eb_list; do
     - echo "Checking $(basename $i) ..."
     - if [[ $(basename $i) == *AMBER* ]]; then
-    - sg amber eb --check-style --check-contrib $i || faulty="$faulty $i"
+    - sg amber -c "eb --check-style --check-contrib $i" || faulty="$faulty $i"
     - elif [[ $(basename $i) == *CPMD* ]]; then
-    - sg cpmd eb --check-style --check-contrib $i || faulty="$faulty $i"
+    - sg cpmd -c "eb --check-style --check-contrib $i" || faulty="$faulty $i"
     - elif [[ $(basename $i) == *NAMD* ]]; then
-    - echo sg namd eb --check-style --check-contrib $i
-    - sg namd eb --check-style --check-contrib $i || faulty="$faulty $i"
+    - sg namd -c "eb --check-style --check-contrib $i" || faulty="$faulty $i"
     - else
     - eb --check-style --check-contrib $i || faulty="$faulty $i"
     - fi