Merge branch 'Octave-5.2.0' of...

Merge branch 'Octave-5.2.0' of https://gitlab.version.fz-juelich.de/zitz1/easybuild-repository into zitz1_octave

Golden_Repo/g/GraphicsMagick/GraphicsMagick-1.3.35-GCCcore-9.3.0.eb

+easyblock = 'ConfigureMake'
+
+name = 'GraphicsMagick'
+version = '1.3.35'
+
+homepage = 'http://www.graphicsmagick.org/'
+description = """GraphicsMagick is the swiss army knife of image processing.
+"""
+
+site_contacts = 'a.kreuzer@fz-juelich.de'
+
+toolchain = {'name': 'GCCcore', 'version': '9.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = [
+    SOURCEFORGE_SOURCE,
+    'ftp://ftp.graphicsmagick.org/pub/GraphicsMagick/%(version_major_minor)s/',
+]
+sources = [SOURCE_TAR_GZ]
+
+configopts = "--enable-shared --enable-static "
+
+builddependencies = [
+    ('binutils', '2.34'),
+    ('pkg-config', '0.29.2'),
+    ('libtool', '2.4.6'),
+]
+
+dependencies = [
+    ('X11', '20200222'),
+    ('bzip2', '1.0.8'),
+    ('freetype', '2.10.1'),
+    ('libpng', '1.6.37'),
+    ('libjpeg-turbo', '2.0.5'),
+    ('LibTIFF', '4.1.0'),
+    ('libxml2', '2.9.10'),
+    ('XZ', '5.2.5'),
+    ('zlib', '1.2.11'),
+]
+
+moduleclass = 'vis'

Golden_Repo/o/Octave/Octave-5.2.0-gpsmkl-2020.eb

+easyblock = 'ConfigureMake'
+
+name = 'Octave'
+version = '5.2.0'
+
+homepage = 'http://www.gnu.org/software/octave/'
+description = """GNU Octave is a high-level interpreted language, primarily intended for numerical computations."""
+
+site_contacts = 'a.kreuzer@fz-juelich.de'
+
+toolchain = {'name': 'gpsmkl', 'version': '2020'}
+
+source_urls = [GNU_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+builddependencies = [
+    ('Bison', '3.6.4'),
+    ('flex', '2.6.4'),
+    ('pkg-config', '0.29.2'),
+    ('texinfo', '6.7'),
+    ('gperf', '3.1'),
+    ('Autotools', '20200321'),
+]
+
+dependencies = [
+    ('X11', '20200222'),
+    ('PCRE', '8.44'),
+    ('ncurses', '6.2'),
+    ('libreadline', '8.0'),
+    ('ARPACK-NG', '3.7.0'),  
+    ('cURL', '7.71.1'),
+    ('FLTK', '1.3.5'), 
+    ('fontconfig', '2.13.92'),
+    ('freetype', '2.10.1'),
+    ('GLPK', '4.65'), 
+    ('GL2PS', '1.4.2'), 
+    ('gnuplot', '5.2.8'),
+    ('Java', '1.8', '', True),
+    ('OpenGL', '2020'),  
+    ('zlib', '1.2.11'),
+    ('Qhull', '2020.1'), 
+    ('Qt5', '5.14.2'),
+    ('HDF5', '1.10.6'),
+    ('qrupdate', '1.1.2'), 
+    ('SuiteSparse', '5.7.1', '-CUDA'),
+    ('GraphicsMagick', '1.3.35'),
+    ('FFTW', '3.3.8'),
+]
+
+# This is an OS dep because texinfo requires tex (and tex is too much to port to EB).
+# There is a texinfo in the EB repo but this doesn't really work as it requires an additional step to install
+# the necessary texinfo.tex files in the main tex installation. If tex is coming from the system and not
+# EB then this additional step can't be done...so better to push everything back to the OS
+osdependencies = ['texinfo-tex']
+
+configopts = 'MOC=$EBROOTQT5/bin/moc '
+configopts += 'UIC=$EBROOTQT5/bin/uic '
+configopts += 'RCC=$EBROOTQT5/bin/rcc '
+configopts += 'LRELEASE=$EBROOTQT5/bin/lrelease '
+configopts += '--with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK" --disable-docs '
+# correct for both GCC and Intel compilers
+configopts += '--enable-fortran-calling-convention=gfortran '
+
+sanity_check_paths = {
+    'files': ['bin/octave'],
+    'dirs': []
+}
+
+sanity_check_commands = [('octave', '--eval "1+2"')]
+
+moduleclass = 'math'

Golden_Repo/q/Qhull/Qhull-2020.1-GCCcore-9.3.0.eb

+easyblock = 'CMakeMake'
+
+name = 'Qhull'
+version = '2020.1'
+
+homepage = 'http://www.qhull.org'
+description = """
+Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point,
+furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d,
+and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.
+"""
+
+site_contacts = 'a.kreuzer@fz-juelich.de'
+
+toolchain = {'name': 'GCCcore', 'version': '9.3.0'}
+
+# Recently changed the Unix version numbering see http://www.qhull.org/src/Changes.txt
+# and https://github.com/Homebrew/homebrew-science/issues/3353
+sources = ['%(namelower)s-%(version_major)s-src-8.0.0.tgz']
+source_urls = ['http://www.qhull.org/download/']
+
+builddependencies = [
+    ('binutils', '2.34'),
+    ('CMake', '3.18.0'),
+]
+
+
+sanity_check_paths = {
+    'files': ['bin/qhull', 'lib/libqhull.%s' % SHLIB_EXT, 'lib/pkgconfig/qhull.pc'],
+    'dirs': [],
+}
+
+modextrapaths = {
+    'CPATH': ['qhull/include'],
+}
+
+parallel = 1
+
+moduleclass = 'math'

Golden_Repo/q/qrupdate/qrupdate-1.1.2-GCCcore-9.3.0.eb

+easyblock = 'MakeCp'
+
+name = 'qrupdate'
+version = '1.1.2'
+
+homepage = 'https://sourceforge.net/projects/qrupdate/'
+description = """qrupdate is a Fortran library for fast updates of QR and Cholesky decompositions."""
+
+site_contacts = 'a.kreuzer@fz-juelich.de'
+
+toolchain = {'name': 'GCCcore', 'version': '9.3.0'}
+toolchainopts = {'pic': True}
+
+sources = [SOURCE_TAR_GZ]
+source_urls = [SOURCEFORGE_SOURCE]
+
+patches = ['%(name)s-%(version)s_makeconf.patch']
+
+builddependencies = [
+    ('binutils', '2.34')
+]
+
+buildopts = 'lib'
+
+files_to_copy = [(['libqrupdate.a'], 'lib')]
+
+sanity_check_paths = {
+    'files': ['lib/libqrupdate.a'],
+    'dirs': [],
+}
+
+parallel = 1
+
+moduleclass = 'numlib'

Golden_Repo/q/qrupdate/qrupdate-1.1.2_makeconf.patch

+# Pick FC and FFLAGS from environmental variables
+# March 8th 2016 B. Hajgato (Free Uviveristy Brussels - VUB)
+--- qrupdate-1.1.2/Makeconf.old	2010-01-19 12:35:49.000000000 +0100
++++ qrupdate-1.1.2/Makeconf	2016-03-08 20:51:11.662603099 +0100
+@@ -1,9 +1,9 @@
+ # set this to your compiler's executable name (e.g. gfortran, g77)
+-FC=gfortran
++FC?=gfortran
+ # requested flags
+-FFLAGS=-fimplicit-none -O3 -funroll-loops 
++FFLAGS?=-fimplicit-none -O3 -funroll-loops 
+ # set if you need shared library
+-FPICFLAGS=-fPIC
++FPICFLAGS=
+ 
+ # BLAS library (only required for tests)
+ BLAS=-lblas

Golden_Repo/t/texinfo/texinfo-6.7-GCCcore-9.3.0.eb

+easyblock = 'ConfigureMake'
+
+name = 'texinfo'
+version = '6.7'
+
+homepage = 'https://www.gnu.org/software/texinfo/'
+description = """Texinfo is the official documentation format of the GNU project."""
+
+site_contacts = 'a.kreuzer@fz-juelich.de'
+
+source_urls = [GNU_SOURCE]
+sources = [SOURCELOWER_TAR_XZ]
+
+toolchain = {'name': 'GCCcore', 'version': '9.3.0'}
+
+builddependencies = [
+    ('binutils', '2.34'),
+]
+
+dependencies = [
+    ('ncurses', '6.2'),
+    ('texlive', '20200406'),
+]
+
+preinstallopts = "make TEXMF=%(installdir)s/texmf install-tex && "
+
+# This will overwrite a users $TEXMFHOME so this module is best used as a build dependency
+modextravars = {'TEXMFHOME': '%(installdir)s/texmf'}
+modloadmsg  = "\\n"
+modloadmsg += "WARNING: This texinfo module has (re)defined the value for the environment variable \\$TEXMFHOME.\\n"
+modloadmsg += "If you use a custom texmf directory (such as ~/texmf) you should copy files found in the\\n"
+modloadmsg += "new \\$TEXMFHOME to your custom directory and reset the value of \\$TEXMFHOME to point to that space:\\n"
+modloadmsg += "\\tcp -r \\$TEXMFHOME/* /path/to/your/texmf\\n"
+modloadmsg += "\\texport TEXMFHOME=/path/to/your/texmf\\n"
+
+sanity_check_paths = {
+    'files': ['bin/info', 'bin/makeinfo', 'bin/pod2texi', 'bin/texi2pdf', 'texmf/tex/texinfo/texinfo.tex'],
+    'dirs': [],
+}
+
+moduleclass = 'devel'