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eFlows4HPC WP2
DataCatalog
Commits
5cc46db7
Commit
5cc46db7
authored
3 years ago
by
Jedrzej Rybicki
Browse files
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storage more less tested
parent
4d039833
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Changes
2
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2 changed files
apiserver/storage/JsonFileStorageAdapter.py
+14
-26
14 additions, 26 deletions
apiserver/storage/JsonFileStorageAdapter.py
tests/storage_tests/test_jsonbackend.py
+38
-12
38 additions, 12 deletions
tests/storage_tests/test_jsonbackend.py
with
52 additions
and
38 deletions
apiserver/storage/JsonFileStorageAdapter.py
+
14
−
26
View file @
5cc46db7
...
@@ -8,13 +8,8 @@ from apiserver.config import ApiserverSettings
...
@@ -8,13 +8,8 @@ from apiserver.config import ApiserverSettings
from
.LocationStorage
import
(
AbstractLocationDataStorageAdapter
,
LocationData
,
from
.LocationStorage
import
(
AbstractLocationDataStorageAdapter
,
LocationData
,
LocationDataType
)
LocationDataType
)
#from dataclasses import dataclass, asdict
#perhaps even that:
#from dataclasses_json import dataclass_json
from
pydantic
import
BaseModel
from
pydantic
import
BaseModel
#@dataclass
class
StoredData
(
BaseModel
):
class
StoredData
(
BaseModel
):
actualData
:
LocationData
actualData
:
LocationData
users
:
List
[
str
]
users
:
List
[
str
]
...
@@ -50,6 +45,9 @@ class JsonFileStorageAdapter(AbstractLocationDataStorageAdapter):
...
@@ -50,6 +45,9 @@ class JsonFileStorageAdapter(AbstractLocationDataStorageAdapter):
raise
FileNotFoundError
(
f
"
The requested object (
{
oid
}
) does not exist.
"
)
raise
FileNotFoundError
(
f
"
The requested object (
{
oid
}
) does not exist.
"
)
return
fullpath
return
fullpath
def
__load_object
(
self
,
path
):
return
StoredData
.
parse_file
(
path
)
def
__get_unique_id
(
self
,
path
:
str
)
->
str
:
def
__get_unique_id
(
self
,
path
:
str
)
->
str
:
oid
=
str
(
uuid
.
uuid4
())
oid
=
str
(
uuid
.
uuid4
())
while
(
os
.
path
.
exists
(
os
.
path
.
join
(
path
,
oid
))):
while
(
os
.
path
.
exists
(
os
.
path
.
join
(
path
,
oid
))):
...
@@ -58,15 +56,12 @@ class JsonFileStorageAdapter(AbstractLocationDataStorageAdapter):
...
@@ -58,15 +56,12 @@ class JsonFileStorageAdapter(AbstractLocationDataStorageAdapter):
def
get_list
(
self
,
n_type
:
LocationDataType
)
->
List
:
def
get_list
(
self
,
n_type
:
LocationDataType
)
->
List
:
local_path
=
self
.
__setup_path
(
n_type
.
value
)
local_path
=
self
.
__setup_path
(
n_type
.
value
)
allFiles
=
[
f
for
f
in
os
.
listdir
(
local_path
)
if
os
.
path
.
isfile
(
os
.
path
.
join
(
local_path
,
f
))]
# now each file has to be checked for its filename (= oid)
# and the LocationData name (which is inside the json)
retList
=
[]
retList
=
[]
for
f
in
allFiles
:
for
f
in
os
.
listdir
(
local_path
):
data
=
StoredData
.
parse_file
(
os
.
path
.
join
(
local_path
,
f
))
p
=
os
.
path
.
join
(
local_path
,
f
)
#with open(os.path.join(local_path, f)) as file:
if
not
os
.
path
.
isfile
(
p
):
# data = json.load(file)
continue
data
=
self
.
__load_object
(
p
)
retList
.
append
({
data
.
actualData
.
name
:
f
})
retList
.
append
({
data
.
actualData
.
name
:
f
})
return
retList
return
retList
...
@@ -78,27 +73,20 @@ class JsonFileStorageAdapter(AbstractLocationDataStorageAdapter):
...
@@ -78,27 +73,20 @@ class JsonFileStorageAdapter(AbstractLocationDataStorageAdapter):
json
.
dump
(
toStore
.
dict
(),
json_file
)
json
.
dump
(
toStore
.
dict
(),
json_file
)
return
(
oid
,
data
)
return
(
oid
,
data
)
def
__load_object
(
self
,
path
):
# move to data class?
with
open
(
path
,
'
r
'
)
as
f
:
data
=
json
.
load
(
f
)
return
data
def
get_details
(
self
,
n_type
:
LocationDataType
,
oid
:
str
):
def
get_details
(
self
,
n_type
:
LocationDataType
,
oid
:
str
):
full_path
=
self
.
__get_object_path
(
value
=
n_type
.
value
,
oid
=
oid
)
full_path
=
self
.
__get_object_path
(
value
=
n_type
.
value
,
oid
=
oid
)
obj
=
self
.
__load_object
(
path
=
full_path
)
obj
=
self
.
__load_object
(
path
=
full_path
)
return
obj
[
'
actualData
'
]
return
obj
.
actualData
def
update_details
(
self
,
n_type
:
LocationDataType
,
oid
:
str
,
data
:
LocationData
,
usr
:
str
):
def
update_details
(
self
,
n_type
:
LocationDataType
,
oid
:
str
,
data
:
LocationData
,
usr
:
str
):
# TODO: usr is ignored here?
full_path
=
self
.
__get_object_path
(
value
=
n_type
.
value
,
oid
=
oid
)
full_path
=
self
.
__get_object_path
(
value
=
n_type
.
value
,
oid
=
oid
)
o
ld_data
=
self
.
__load_object
(
path
=
full_path
)
o
bj
=
self
.
__load_object
(
path
=
full_path
)
o
ld_data
[
'
actualData
'
]
=
data
o
bj
.
actualData
=
data
full_path
=
self
.
__get_object_path
(
value
=
n_type
.
value
,
oid
=
oid
)
with
open
(
full_path
,
'
w
'
)
as
f
:
with
open
(
full_path
,
'
w
'
)
as
file
:
json
.
dump
(
obj
.
dict
(),
f
)
json
.
dump
(
old_data
.
json
(),
file
)
return
(
oid
,
data
)
return
(
oid
,
data
)
...
...
This diff is collapsed.
Click to expand it.
tests/storage_tests/test_jsonbackend.py
+
38
−
12
View file @
5cc46db7
...
@@ -12,7 +12,8 @@ class SomeTests(unittest.TestCase):
...
@@ -12,7 +12,8 @@ class SomeTests(unittest.TestCase):
def
setUp
(
self
):
def
setUp
(
self
):
Settings
=
namedtuple
(
'
Settings
'
,
[
'
json_storage_path
'
])
Settings
=
namedtuple
(
'
Settings
'
,
[
'
json_storage_path
'
])
self
.
test_config
=
Settings
(
'
/tmp/json_test/
'
)
self
.
test_config
=
Settings
(
'
/tmp/json_test/
'
)
pathlib
.
Path
(
self
.
test_config
.
json_storage_path
).
mkdir
(
parents
=
True
,
exist_ok
=
True
)
pathlib
.
Path
(
self
.
test_config
.
json_storage_path
).
mkdir
(
parents
=
True
,
exist_ok
=
True
)
self
.
store
=
JsonFileStorageAdapter
(
self
.
test_config
)
self
.
store
=
JsonFileStorageAdapter
(
self
.
test_config
)
...
@@ -33,25 +34,50 @@ class SomeTests(unittest.TestCase):
...
@@ -33,25 +34,50 @@ class SomeTests(unittest.TestCase):
def
test_add_new
(
self
):
def
test_add_new
(
self
):
d
=
LocationData
(
name
=
'
bla
'
,
url
=
'
local
'
)
d
=
LocationData
(
name
=
'
bla
'
,
url
=
'
local
'
)
(
oid
,
data
)
=
self
.
store
.
add_new
(
n_type
=
LocationDataType
.
DATASET
,
data
=
d
,
usr
=
'
test_user
'
)
(
oid
,
data
)
=
self
.
store
.
add_new
(
n_type
=
LocationDataType
.
DATASET
,
data
=
d
,
usr
=
'
test_user
'
)
self
.
assertEquals
(
d
,
data
,
"
Data should be equal
"
)
self
.
assertEquals
(
d
,
data
,
"
Data should be equal
"
)
self
.
assertIsNotNone
(
oid
)
self
.
assertIsNotNone
(
oid
)
def
test_add_and_read
(
self
):
def
test_add_and_read
(
self
):
l_data
=
LocationData
(
name
=
'
test1
'
,
url
=
'
http://n.go
'
,
metadata
=
[])
l_data
=
LocationData
(
name
=
'
test1
'
,
url
=
'
http://n.go
'
,
metadata
=
[])
(
oid
,
data
)
=
self
.
store
.
add_new
(
n_type
=
LocationDataType
.
DATASET
,
data
=
l_data
,
usr
=
'
test_user
'
)
(
oid
,
data
)
=
self
.
store
.
add_new
(
n_type
=
LocationDataType
.
DATASET
,
data
=
l_data
,
usr
=
'
test_user
'
)
self
.
assertEquals
(
l_data
,
data
,
"
Data should be equal
"
)
self
.
assertEquals
(
l_data
,
data
,
"
Data should be equal
"
)
self
.
assertIsNotNone
(
oid
)
self
.
assertIsNotNone
(
oid
)
print
(
data
)
lst
=
self
.
store
.
get_list
(
n_type
=
LocationDataType
.
DATASET
)
lst
=
self
.
store
.
get_list
(
n_type
=
LocationDataType
.
DATASET
)
self
.
assertEqual
(
len
(
lst
),
1
,
'
One should be there
'
)
self
.
assertEqual
(
len
(
lst
),
1
,
'
One should be there
'
)
m_o
=
lst
[
0
]
self
.
assertEquals
(
list
(
m_o
.
keys
())[
0
],
l_data
.
name
)
self
.
assertEquals
(
list
(
m_o
.
values
())[
0
],
oid
)
def
test_get_details
(
self
):
# get_details(self, n_type: LocationDataType, oid: str):
l_data
=
LocationData
(
name
=
'
test1
'
,
url
=
'
http://n.go
'
,
metadata
=
[])
(
oid
,
data
)
=
self
.
store
.
add_new
(
n_type
=
LocationDataType
.
DATASET
,
data
=
l_data
,
usr
=
'
test_user
'
)
self
.
assertEquals
(
l_data
,
data
,
"
Data should be equal
"
)
self
.
assertIsNotNone
(
oid
)
details
=
self
.
store
.
get_details
(
n_type
=
LocationDataType
.
DATASET
,
oid
=
oid
)
self
.
assertEquals
(
l_data
,
details
)
def
test_nonexisting_details
(
self
):
self
.
assertRaises
(
FileNotFoundError
,
self
.
store
.
get_details
,
LocationDataType
.
DATASET
,
'
42
'
)
def
test_update_details
(
self
):
l_data
=
LocationData
(
name
=
'
test1
'
,
url
=
'
http://n.go
'
,
metadata
=
[])
new_data
=
LocationData
(
name
=
'
test2
'
,
url
=
'
http://go.n
'
,
metadata
=
{
'
key
'
:
'
value
'
})
(
oid
,
data
)
=
self
.
store
.
add_new
(
n_type
=
LocationDataType
.
DATASET
,
data
=
l_data
,
usr
=
'
test_user
'
)
self
.
assertEquals
(
l_data
,
data
,
"
Data should be equal
"
)
self
.
assertIsNotNone
(
oid
)
(
oid2
,
r
)
=
self
.
store
.
update_details
(
n_type
=
LocationDataType
.
DATASET
,
oid
=
oid
,
data
=
new_data
,
usr
=
'
tst2
'
)
self
.
assertEquals
(
new_data
,
r
)
self
.
assertEquals
(
oid
,
oid2
)
\ No newline at end of file
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