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README.md

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 ## Table of Contents  
 
-- [Introduction to the Atmospheric Machine Learning Benchmarking System](#Introduction-to-Atmospheric-Machine-Learning-Benchmarking-System)
-- [Requirements](#Requirements)
-- [Getting started](#Getting-started)
-  * [Download of the repository](#Download-of-the-repository)
-  * [Download of NVIDIA's TF1.15 singularity container](#Download-of-NVIDIA's-TF1.15-singularity-container)
-  * [Workflow without singularity containers](#Download-without-singularity-containers)
-  * [Virtual environment](#Virtual-environment)
-    + [On HPC-systems](#On-HPC-systems)
-    + [On other systems](#On-other-systems)
-    + [Further details on the arguments](#Further-details-on-the-arguments)
-      - [Case I - Usage of singularity TF1.15 container](#case-i---usage-of-singularity-tf115-container)
-      - [Case II - Usage of singularity TF1.15 container](#case-ii---usage-of-singularity-tf115-container)
-      - [Further details on the arguments](#further-details-on-the-arguments)
-- [Get the datasets](#Get-the-datasets)
-    + [Complete dataset (> 100 GB memory)](#Complete-dataset-(>-100-GB-memory))
-    + [Toy dataset](#Toy-dataset)
-    + [Climatological reference data](#Climatological-reference-data)
-- [Run the workflow](#Run-the-workflow)
-    + [Create customized runscripts](#create-customized-runscripts)
-  * [Running the workflow steps](#Running-the-workflow-steps)
-  * [Additional Jupyter Notebooks](#Additional-Jupyter-Notebooks)
-- [Directory tree and naming convention](#Directory-tree-and-naming-convention)
-- [Benchmarking architectures](#Benchmarking-architectures)
-- [Contributors and contact](#Contributors-and-contact)
+- [Introduction to Atmospheric Machine Learning Benchmarking System](#introduction-to-atmospheric-machine-learning-benchmarking-system)
+- [Requirements](#requirements)
+- [Getting started](#getting-started)
+  * [Download of the repository](#download-of-the-repository)
+  * [Download of NVIDIA's TF1.15 singularity container](#download-of-nvidia-s-tf115-singularity-container)
+  * [Workflow without singularity containers](#workflow-without-singularity-containers)
+  * [Virtual environment](#virtual-environment)
+    + [On HPC-systems](#on-hpc-systems)
+      - [Case I - With TF1.15 singularity container](#case-i---with-tf115-singularity-container)
+      - [Case II - Without TF1.15 singularity container, but with software modules](#case-ii---without-tf115-singularity-container--but-with-software-modules)
+    + [On other systems](#on-other-systems)
+    + [Further details on the arguments](#further-details-on-the-arguments)
+- [Get the datasets](#get-the-datasets)
+  * [Complete ERA5 dataset (> 100 GB memory)](#complete-era5-dataset----100-gb-memory-)
+  * [Toy dataset](#toy-dataset)
+  * [Climatological reference data](#climatological-reference-data)
+- [Run the workflow](#run-the-workflow)
+  * [Create customized runscripts](#create-customized-runscripts)
+  * [Running the workflow steps](#running-the-workflow-steps)
+  * [Additional Jupyter Notebooks](#additional-jupyter-notebooks)
+- [Directory tree and naming convention](#directory-tree-and-naming-convention)
+    + [Overview on placeholders of the output directory tree](#overview-on-placeholders-of-the-output-directory-tree)
+    + [Directory name convention](#directory-name-convention)
+- [Benchmarking architectures](#benchmarking-architectures)
+- [Contributors and contact](#contributors-and-contact)
 
 ## Introduction to Atmospheric Machine Learning Benchmarking System