update build

hdf5plugin_zfp/CMakeLists.txt

-cmake_minimum_required (VERSION 2.8.10)
+cmake_minimum_required (VERSION 3.1.0)
 project (H5ZFP C)
 
 #-----------------------------------------------------------------------------

hdf5plugin_zfp/INSTALL.txt

@@ -24,6 +24,7 @@ Quick Installation Guide:
 
       export ZFP_ROOT=<ZFP_ROOT_DIR>
       export HDF5_ROOT=<HDF5-INSTPATH>
+      export HDF5_DIR=${HDF5_ROOT}/share/cmake
       export PATH=${HDF5_ROOT}/bin/:${PATH}
       export LD_LIBRARY_PATH=${HDF5_ROOT}/lib/:$LD_LIBRARY_PATH
 

hdf5plugin_zfp/LICENSE

+Copyright Notice and License Terms for 
+HDF5 ZFP compression filter plugin
+-----------------------------------------------------------------------------
+
 H5zfp - HDF5 filter using ZFP (LLNL) for improved compression
 
-Copyright (c) 2014-2015, RWTH Aachen University, JARA - Juelich Aachen Research Alliance.
-Produced at the RWTH Aachen University, Germany.
-Written by Jens Henrik Göbbert (goebbert@jara.rwth-aachen.de)
+Copyright (c) 2014-2015 by RWTH Aachen University, JARA - Juelich Aachen Research Alliance.
+Copyright (c) 2016      by Juelich Forschungszentrum GmbH.
+Written by Jens Henrik Göbbert (j.goebbert@fz-juelich.de)
 All rights reserved.
 
 This file is part of the H5zfp library.
-For details, see http://www.jara.org/de/research/jara-hpc/.
+For details, see https://gitlab.version.fz-juelich.de/goebbert/hdf5plugins
 
 Redistribution and use in source and binary forms, with or without
 modification, are permitted provided that the following conditions are met:
@@ -18,9 +22,9 @@ this list of conditions and the disclaimer below.
 this list of conditions and the disclaimer (as noted below) in the
 documentation and/or other materials provided with the distribution.
 
-3. Neither the name of the University nor the names of its contributors may
-be used to endorse or promote products derived from this software without
-specific prior written permission.
+3. Neither the name of the RWTH Aachen University or Jülich Forschungszentrum GmbH
+nor the names of its contributors may be used to endorse or promote products 
+derived from this software without specific prior written permission.
 
 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
@@ -70,7 +74,6 @@ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
 ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
 THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
 
 Additional BSD Notice
 
@@ -93,3 +96,4 @@ Security, LLC.  The views and opinions of authors expressed herein do not
 necessarily state or reflect those of the United States Government or
 Lawrence Livermore National Security, LLC, and shall not be used for
 advertising or product endorsement purposes.
+

hdf5plugin_zfp/README.txt

@@ -17,8 +17,8 @@ More about HDF5 filers can be found at
 Requirements,
   Building this ZFP compression filter for HDF5 requires CMake.
   It also requires knowledge of the hdf5 installation and minimum of HDF5.
-    CMake (>=2.8.10), http://www.cmake.org
-    HDF5  (>=1.8.12 build with cmake), http://www.hdfgroup.org
+    CMake (>=3.1.0), http://www.cmake.org
+    HDF5  (>=1.8.15 build with cmake), http://www.hdfgroup.org
 
 Howto use,
   hdf5plugin_ZFP is a compression filter, which will be dynamically loaded at runtime by the HDF5 library.
@@ -52,15 +52,7 @@ Prepare HDF5,
       make && make install
       export PATH=<CMAKE-INSTPATH>/bin/:${PATH}
 
-    2) patch HDF5
-      !!! ATTENTION !!!
-      h5repack <= 1.8.14 has a bug in its command line parser (test 2 will fail).
-      The bug has been reported and will probably be fixed in 1.8.15.
-      The patch can be found in hdf5plugin_ZFP/patch/.
-      This patch enables the easy use of h5repack as described in test 2.
-          patch <HDF5-SOURCEPATH>/tools/h5repack/h5repack_parse.c < <HDF5PLUGIN_ZFP>/patch/h5repack_parse.patch
-
-    3) configure HDF5 (using cmake(!))
+    2) configure HDF5 (using cmake(!))
       cd <HDF5-SOURCEPATH>
       mkdir build; cd build
       ccmake ..
@@ -68,51 +60,53 @@ Prepare HDF5,
           set {HDF5_BUILD_TOOLS}       == "ON"
           set {HDF5_ENABLE_PARALLEL}   == "OFF" (filters are not supported for parallel HDF5, yet)
 
-    4) build and install HDF5
+    3) build and install HDF5
       make
       make install
 
 Prepare libZFP,
-    5) build static library libzfp.a (minimum 0.3.0)
+    4) build static library libzfp.a (minimum 0.3.0)
       cd <ZFP_SOURCES>/src
       make
 
 Build,
-    6) set enviroment vars
+    5) set enviroment vars (check set_env.sh)
       export ZFP_ROOT=<ZFP_ROOT_DIR>
       export HDF5_ROOT=<HDF5-INSTPATH>
+      export HDF5_DIR=${HDF5_ROOT}/share/cmake
+      export HDF5_PLUGIN_PATH=${HDF5_ROOT}/lib/plugin
       export PATH=${HDF5_ROOT}/bin/:${PATH}
       export LD_LIBRARY_PATH=${HDF5_ROOT}/lib/:$LD_LIBRARY_PATH
 
-    7) configure hdf5plugin_ZFP
+    6) configure hdf5plugin_ZFP
       cd hdf5plugin_ZFP
       mkdir build; cd build
       ccmake ..
           set {CMAKE_INSTALL_PREFIX} to "<HDF5-INSTPATH>"
 
-    8) build and install
+    7) build and install
       make
       make install
 
 Test,
-    9) set enviroment vars for HDF5
+    8) set enviroment vars for HDF5
       export HDF5_ROOT=<HDF5-INSTPATH>
       export PATH=${HDF5_ROOT}/bin/:${PATH}
       export LD_LIBRARY_PATH=${HDF5_ROOT}/lib/:$LD_LIBRARY_PATH
 
-   10) set PLUGIN search path (!!)
+    9) set PLUGIN search path (!!)
       export HDF5_PLUGIN_PATH=${HDF5_ROOT}/lib/plugin/
 
-   11) test 1: pack+unpack test data with default settings
+   10) test 1: pack+unpack test data with default settings
       cd hdf5plugin_ZFP
       h5repack -v -f UD=299,1,0 test/test.h5 test_compr.h5
       h5repack -v --filter=NONE test_compr.h5 test_uncomp.h5
 
-   12) test 2: pack+unpack test data with user defined settings
+   11) test 2: pack+unpack test data with user defined settings
        !!! ATTENTION !!!
        h5repack <= 1.8.14 has a bug in its command line parser. Have you applied the patch, when installing HDF5?
       h5repack -v -f UD=299,5,0,256,32,-16,512 test/test.h5 test_compr.h5
       h5repack -v --filter=NONE test_compr.h5 test_uncomp.h5
 
 More,
-    10) Read HDF5DynamicallyLoadedFilters.pdf for more information on dynamically loaded filters and how to use them in applications.
+    12) Read HDF5DynamicallyLoadedFilters.pdf for more information on dynamically loaded filters and how to use them in applications.

hdf5plugin_zfp/hdf5/install/install_HDF5_1.10_gcc44.sh

+#
+# call this script with command 'source'
+#
+export CC=mpicc
+export CXX=mpicxx 
+export FC=mpif90
+export F77=mpif77
+export F90=mpif90
+
+./configure \
+        --enable-fortran \
+        --enable-build-mode=production \
+        --enable-shared=no \
+        --enable-static-exec \
+        --enable-parallel \
+        --enable-direct-vfd \
+        --prefix=/home/jhgoebbert/Software/hdf5/1.10.0_gcc4.4_ompi1.10

hdf5plugin_zfp/hdf5/install/install_HDF5_1.8_gcc44.sh

+#
+# call this script with command 'source'
+#
+export CC=mpicc
+export CXX=mpicxx
+export FC=mpif90
+export F77=mpif77
+export F90=mpif90
+
+./configure \
+        --enable-fortran \
+        --enable-production \
+        --enable-shared=no \
+        --enable-static-exec \
+        --enable-parallel \
+        --enable-direct-vfd \
+        --prefix=/home/jhgoebbert/Software/hdf5/1.8.17_gcc4.4_ompi1.10

hdf5plugin_zfp/set_env.sh

@@ -3,7 +3,9 @@
 BASE=`pwd`
 
 export ZFP_ROOT=${BASE}/zfp/zfp-0.3.0
-export HDF5_ROOT=${BASE}/hdf5/hdf5-1.8.14_gcc48_patched
+export HDF5_ROOT=${BASE}/hdf5/hdf5-1.8.17
+
+export HDF5_DIR=${HDF5_ROOT}/share/cmake
 
 export HDF5_PLUGIN_PATH=${HDF5_ROOT}/lib/plugin