Optimize includes + jpsfire fix

CMakeLists.txt

IO/GeoFileParser.cpp

IO/IODispatcher.cpp

IO/OutputHandler.cpp

IO/TraVisToClient.cpp

JPSfire/C_toxicity_analysis/ToxicityAnalysis.cpp

JPSfire/generic/FDSMesh.cpp

JPSfire/generic/FDSMeshStorage.cpp

Simulation.cpp

Utest/JPSRunTest.py

Utest/Validation/1test_1D/fd.py

Utest/Validation/1test_1D/run_validation_1.py

Utest/Validation/2test_2D/plot_fd.py

Utest/Validation/2test_2D/run_validation_2.py

Utest/Validation/3test_UO/run_validation_3.py

Utest/Validation/4test_EO/run_validation_4.py

Utest/Validation/6test_KO/run_validation_6.py

Utest/Validation/7test_BO/run_validation_7.py

Utest/Validation/test_13/run_validation_13.py

Utest/juelich_tests/test_10/runtest_juelich_10.py