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Jan Ebert
sc_venv_template
Commits
f6eb71d8
Commit
f6eb71d8
authored
4 years ago
by
Stefan Kesselheim
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update doc
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@@ -51,7 +51,7 @@ them into the workflow. This can e.g. mean that a compilation step is added in t
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@@ -51,7 +51,7 @@ them into the workflow. This can e.g. mean that a compilation step is added in t
setting appropriate environment variables is included in the activation step.
setting appropriate environment variables is included in the activation step.
## Singularity
## Singularity
A useful alternative to environment modules are container-based environments.
A useful alternative to environment modules are container-based environments.
ToDo: More Details
# Details
# Details
The setup is configured in the bash script
`config.sh`
. The user can define a name for the venv and directory
The setup is configured in the bash script
`config.sh`
. The user can define a name for the venv and directory
...
@@ -79,9 +79,3 @@ by jupyter and a helper script in the virtual environment folder.
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@@ -79,9 +79,3 @@ by jupyter and a helper script in the virtual environment folder.
# Intended Workflow
1.
Edit
`config.sh`
to change name an location of the venv if required.
2.
Edit
`modules.sh`
to change the modules loaded prior to the creation of the venv.
3.
Edit
`requirements.txt`
to change the packages to be installed during setup.
4.
Edit
`setup.sh`
and
`activate.sh`
to add extra steps for custom modules.
5.
Create a kernel with
`create_kernel.sh`
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