Merge branch 'lukas_issue173_bug_mlair-in-logging' into 'develop'

Resolve "mlair started not appearing"

See merge request toar/mlair!149

mlair/run_modules/run_environment.py

@@ -92,17 +92,18 @@ class RunEnvironment(object):
     logger = None
     tracker_list = []
 
-    def __init__(self):
+    def __init__(self, name=None):
         """Start time tracking automatically and logs as info."""
         if RunEnvironment.data_store is None:
             RunEnvironment.data_store = DataStoreObject()
         if RunEnvironment.logger is None:
             RunEnvironment.logger = Logger()
-        self.time = TimeTracking()
-        logging.info(f"{self.__class__.__name__} started")
+        self._name = name if name is not None else self.__class__.__name__
+        self.time = TimeTracking(name=name)
+        logging.info(f"{self._name} started")
         # atexit.register(self.__del__)
         self.data_store.tracker.append({})
-        self.tracker_list.extend([{self.__class__.__name__: self.data_store.tracker[-1]}])
+        self.tracker_list.extend([{self._name: self.data_store.tracker[-1]}])
 
     def __del__(self):
         """
@@ -114,7 +115,7 @@ class RunEnvironment(object):
         """
         if not self.del_by_exit:
             self.time.stop()
-            logging.info(f"{self.__class__.__name__} finished after {self.time}")
+            logging.info(f"{self._name} finished after {self.time}")
             self.del_by_exit = True
             # copy log file and clear data store only if called as base class and not as super class
             if self.__class__.__name__ == "RunEnvironment":

mlair/workflows/abstract_workflow.py

@@ -15,8 +15,9 @@ class Workflow:
     method is sufficient. It must be taken care for inter-stage dependencies, this workflow class only handles the
     execution but not the dependencies (workflow would probably fail in this case)."""
 
-    def __init__(self):
+    def __init__(self, name=None):
         self._registry = OrderedDict()
+        self._name = name if name is not None else self.__class__.__name__
 
     def add(self, stage, **kwargs):
         """Add a new stage with optional kwargs."""
@@ -24,6 +25,6 @@ class Workflow:
 
     def run(self):
         """Run workflow embedded in a run environment and according to the stage's ordering."""
-        with RunEnvironment():
+        with RunEnvironment(name=self._name):
             for stage, kwargs in self._registry.items():
                 stage(**kwargs)