update installation precedure; remove TimeSeriesPlot from default list

HPC_setup/mlt_modules_juwels.sh

@@ -8,7 +8,7 @@
 module --force purge
 module use $OTHERSTAGES
 
-ml Stages/Devel-2019a
+ml Stages/2019a
 ml GCCcore/.8.3.0
 
 ml Jupyter/2019a-Python-3.6.8

HPC_setup/requirements_JUWELS_additionals.txt

@@ -2,6 +2,8 @@ coverage==5.0.3
 importlib-metadata==1.5.0
 matplotlib==3.2.0              # in SciPy-Stack
 pandas==1.0.1                  # in SciPy-Stack / but older version
+protobuf==3.11.3
+pydot==1.4.1
 py==1.8.1                      # ?
 pyproj==2.5.0                  # in basemap
 pyshp==2.1.0                   # in basemap

HPC_setup/setup_venv_juwels.sh

@@ -24,10 +24,16 @@ source ${cur}/../venv_juwels/bin/activate
 # export path for side-packages 
 export PYTHONPATH=${cur}/../venv_juwels/lib/python3.6/site-packages:${PYTHONPATH}
 
+
+echo "##### START INSTALLING requirements_gpu.txt #####"
+pip install -r ${cur}/../requirements_gpu.txt
+
+echo "##### FINISH INSTALLING requirements_gpu.txt #####"
+
 pip install -r ${cur}/requirements_JUWELS_additionals.txt
 pip install --ignore-installed matplotlib==3.2.0
 pip install --ignore-installed pandas==1.0.1
-
+pip install -U typing_extensions
 
 # Comment: Maybe we have to export PYTHONPATH a second time ater activating the venv (after job allocation)
 # source venv/bin/activate

mlair/configuration/defaults.py

@@ -46,11 +46,15 @@ DEFAULT_USE_ALL_STATIONS_ON_ALL_DATA_SETS = True
 DEFAULT_EVALUATE_BOOTSTRAPS = True
 DEFAULT_CREATE_NEW_BOOTSTRAPS = False
 DEFAULT_NUMBER_OF_BOOTSTRAPS = 20
-DEFAULT_PLOT_LIST = ["PlotMonthlySummary", "PlotStationMap", "PlotClimatologicalSkillScore", "PlotTimeSeries",
+#DEFAULT_PLOT_LIST = ["PlotMonthlySummary", "PlotStationMap", "PlotClimatologicalSkillScore", "PlotTimeSeries",
+#                     "PlotCompetitiveSkillScore", "PlotBootstrapSkillScore", "PlotConditionalQuantiles",
+#                     "PlotAvailability"]
+DEFAULT_PLOT_LIST = ["PlotMonthlySummary", "PlotStationMap", "PlotClimatologicalSkillScore", 
                      "PlotCompetitiveSkillScore", "PlotBootstrapSkillScore", "PlotConditionalQuantiles",
                      "PlotAvailability"]
 
 
+
 def get_defaults():
     """Return all default parameters set in defaults.py"""
     return {key: value for key, value in globals().items() if key.startswith('DEFAULT')}

requirements_gpu.txt

@@ -2,7 +2,7 @@ absl-py==0.9.0
 astor==0.8.1
 atomicwrites==1.3.0
 attrs==19.3.0
-Cartopy==0.17.0
+#Cartopy==0.17.0
 certifi==2019.11.28
 chardet==3.0.4
 cloudpickle==1.3.0
@@ -16,9 +16,9 @@ grpcio==1.27.2
 h5py==2.10.0
 idna==2.8
 importlib-metadata==1.5.0
-Keras==2.2.4
-Keras-Applications==1.0.8
-Keras-Preprocessing==1.1.0
+#Keras==2.2.4
+#Keras-Applications==1.0.8
+#Keras-Preprocessing==1.1.0
 kiwisolver==1.1.0
 locket==0.2.0
 Markdown==3.2.1
@@ -54,10 +54,10 @@ seaborn==0.10.0
 six==1.11.0
 statsmodels==0.11.1
 tabulate
-tensorboard==1.13.1
-tensorflow-estimator==1.13.0
-tensorflow-gpu==1.13.1
-termcolor==1.1.0
+#tensorboard==1.13.1
+#tensorflow-estimator==1.13.0
+#tensorflow-gpu==1.13.1
+#termcolor==1.1.0
 toolz==0.10.0
 typing-extensions
 urllib3==1.25.8