Resolve "release v1.4.0"

Closes #317 (closed)

mlair/plotting/preprocessing_plotting.py

@@ -454,6 +454,8 @@ class PlotPeriodogram(AbstractPlotClass):
             self._prepare_pgram(generator, pos)
             self._plot(raw=True)
             self._plot(raw=False)
+            self._plot_total(raw=True)
+            self._plot_total(raw=False)
 
     def _prepare_pgram(self, generator, pos):
         raw_data = dict()
@@ -529,3 +531,41 @@ class PlotPeriodogram(AbstractPlotClass):
         # close all open figures / plots
         pdf_pages.close()
         plt.close('all')
+
+    def _plot_total(self, raw=True):
+        plot_path = os.path.join(os.path.abspath(self.plot_folder),
+                                 f"{self.plot_name}{'_raw' if raw else ''}_{self._sampling}_total.pdf")
+        pdf_pages = matplotlib.backends.backend_pdf.PdfPages(plot_path)
+        fig, ax = plt.subplots()
+        res = None
+        for var in self.plot_data_raw.keys():
+            d_var = self.plot_data_raw[var][1]
+            res = d_var if res is None else np.concatenate((res, d_var), axis=-1)
+        if raw is True:
+            for i in range(res.shape[1]):
+                ax.plot(self.f_index, res[:, i], "lightblue")
+            ax.plot(self.f_index, res.mean(axis=1), "blue")
+        else:
+            ma = pd.DataFrame(np.vstack(res)).rolling(5, center=True, axis=0)
+            mean = ma.mean().mean(axis=1).values.flatten()
+            upper, lower = ma.max().mean(axis=1).values.flatten(), ma.min().mean(axis=1).values.flatten()
+            ax.plot(self.f_index, mean, "blue")
+            ax.fill_between(self.f_index, lower, upper, color="lightblue")
+        plt.yscale("log")
+        plt.xscale("log")
+        ax.set_ylabel("power", fontsize='x-large')
+        ax.set_xlabel("frequency $[day^{-1}$]", fontsize='x-large')
+        lims = ax.get_ylim()
+        self._add_annotation_line([1, 2, 3], 365.25, lims, "yr")  # per year
+        self._add_annotation_line(1, 365.25 / 12, lims, "m")  # per month
+        self._add_annotation_line(1, 7, lims, "w")  # per week
+        self._add_annotation_line([1, 0.5], 1, lims, "d")  # per day
+        if self._sampling == "hourly":
+            self._add_annotation_line(2, 1, lims, "d")  # per day
+            self._add_annotation_line([1, 0.5], 1 / 24., lims, "h")  # per hour
+        title = f"Periodogram (total)"
+        plt.title(title)
+        pdf_pages.savefig()
+        # close all open figures / plots
+        pdf_pages.close()
+        plt.close('all')