Resolve "release branch / CI on gpu"

Closes #94 (closed)

added 124 commits

• 74284889 - added plot list for better plot selection, can skip bootstraps also from...
• 8ab3f95b - first try on faster prediction
• 46b3b49f - split bootstrap forecast and skill scores in post-processing, hold only...
• 811bd7d6 - somre renaming and first tests for bootstrap generator
• 164d1cdb - Merge branch 'lukas_issue069_bug_check-valid-stations' into 'develop'
• 6b90f610 - Merge branch 'lukas_issue070_bug_wrong-model-plot-path' into 'develop'
• b146b12b - Merge branch 'lukas_issue074_bug_ols-force-add-constant' into 'develop'
• ad302db1 - include all bugfixes
• 7915b04e - implement new model and add out commented import statement to run_modules
• 5e25dbc6 - update tests for paperModel
• d8838556 - implemented different bootstrap algorithms. Test performance on zam347.
• 3c05a5bd - added min_length parameter to data handling, currently only supported for test set
• ca36674a - added corresponding test
• 7d591f15 - move padding_layer (inception_modules) to Padding2D (advanced_paddings)
• 2e7fc27b - update tests for Padding2D
• 1f4e2e9d - merge branch rel to#78 into #77 (closed)
• 10500dad - also add min_length parameter for train and val set
• 54efbc20 - updated failing test
• 77e6b8da - add name param to check valid station for better logging
• 74b6c989 - Merge branch 'lukas_issue076_feat_minimum-set-ample-size' into 'develop'
• bdb1db17 - minor refac to make allowed paddings more robust against errors
• 19bb00e5 - Felix issue077 feat model like in paper
• 43dbbb95 - fixed test
• 090e1e08 - added custom_objects to model_class.py
• febd62e6 - added custom_object loading to post-processing
• 2d3f6033 - fixed another test
• 9a21d049 - Merge branch 'lukas_issue072_feat_custom-objects' into 'develop'
• ffe2aa52 - supplement on testing and docs
• 01d0fca0 - include docs and tests
• 4b8d8cdc - added check, if lr_decay is set
• df8e3cba - added missing lr availability checks
• d4849364 - updated tests
• 0f645b8d - Merge branch 'lukas_issue071_feat_optional-lr-decay' into 'develop'
• 79fb9653 - removed slow create_boot_straps() implementation
• d7b2daa5 - new Logger class for stream and file logging
• 5232769e - enhance logger class
• 52ee7e31 - logfile logging
• 4d408aeb - corrected test
• 00d65a75 - implementation of extremes in data preparation class
• 63651846 - data generator and distributor can use upsampling
• 6329b0b7 - upsampling is included in experiment workflow and is exclusively restricted to train data
• b0e27b1c - correct permute error
• a4d56c37 - add tests for data preparation
• 9d89303e - tests for prep, gen and dist
• 1bb1cefd - moved logger to run environment
• c451010b - Merge branch 'lukas_issue058_feat_upsample-extremes' into 'develop'
• 6db4da8e - removed logger from all run files
• 802c79c6 - appending from #58 (closed)
• 4b8b51d7 - update requirements.txt
• 0cdc7463 - update
• adc7752c - add 2nd requirements to distinguish for gpu and non-gpu supported platforms
• 3460756a - number of bootstraps is now a parameter from experiment setup
• ae1f5488 - include current dev
• 9ba93032 - added run_zam347 starting script
• b66bc397 - add number of stations to info logging
• 9e1146a4 - add progress to check station
• ae1a3737 - information importance of loading pickle data is debug now
• a22295fb - requirements with gpu support
• 2c4cd969 - removed slowest implementation
• adf9cb42 - implemented decorator to skip scope parameter
• bbe835fe - removed unnecessary general statement in all data store calls
• c676f1f1 - added test and documentation for decorator
• 00acb7bd - Merge branch 'lukas_issue082_refac_default-data-store-scope' into 'develop'
• b7034ea6 - hold only fastest boot strap method
• 72f2cb4d - Skill Scores is not a RunEnvironment inheritance anymore
• c271db81 - bootstraps calculation can be skipped or already calculated data can be used...
• b568c246 - small cleanup
• bd7cf06e - added small descriptions
• f8790767 - changed file path and added to gitignore
• 699228d9 - #87 (closed) update multiply extremes and tests
• 69fb310c - Merge branch 'lukas_issue088_bug_wrong-logging-file-path' into 'develop'
• c393b244 - merge lukass_issue088 into felix_issue087
• 9105617e - update tests for None handling in multiply extremes #87 (closed)
• cd405015 - add new test for multiply extremes: label and history are None (#87 (closed))
• a3f714b7 - Merge branch 'felix_issue087_BUG-multiply_extreme_None_check' into 'develop'
• 459d9303 - logs now error message
• 1dbd0841 - Merge branch 'lukas_issue086_refac_improve-error-handling-runtime' into 'develop'
• 9bc43bf7 - add log file counter
• 80e1d9b3 - Merge branch 'lukas_issue085_refac_log-file-counter' into 'develop'
• 2019194a - update pop_list fuction to behave like dict_pop
• 2e4838f3 - update tests for helpers
• cfdfb51c - if statement for runner removed
• 2f965d0a - split test_error_handling for #80 (closed)
• 9d7337b7 - merge felix_issue080_test_helpers_if_test into checkout...
• bc666b1b - add current development state of #60 (closed)
• 99ae4546 - include current developments
• 157af210 - corrected test and removed unnecessary logging.error calls
• a5d3ec28 - add failing test to check new pytest-sugar package
• 02643eb3 - corrected bug in variable sorting
• 71ef1c82 - Merge branch 'felix_issue080_testing_test_helpers' into 'develop'
• 0e0f1fe5 - try boot strap generator implementation as keras sequence
• dd11e6ea - removed many unnecessary and duplicated methods
• 7722820f - new tests for BootStrapGenerator and CreateShuffledData (tests still will fail)
• 116edaa2 - add function to extract shuffled data (if locally stored data exceeds current dimensions)
• 6bd57ea0 - little bugfix: replaced np.repeat by np.tile for correct array repetition,...
• 447dc7c4 - added descriptions and type hints, finalised bootstrap tests
• 333dd12d - Merge branch 'lukas_issue060_refac_clean-up-bootstrap-workflow' into 'develop'
• 1c0e7cfa - test all updated shared runners
• be45deb9 - removed pre, added tests from scratch and on gpu (both won't be executed currently)
• 37f97bb0 - change runner hostname matching, run all test for this branch
• 5a91bc0e - refactored python3 -> 3.6, add test_type variable to pytest to differ between...
• 11b07f32 - fix for not concurrent runners
• e6105feb - adjust runner regex and test
• 55da63d7 - another test update
• 77e61dc6 - merged pytest cov html and term call
• 3ebf8f5a - test regex only
• fff544da - removed the only regex for this branch, ready to merge
• 26d51f3d - Merge branch 'lukas_issue095_tech_mlt-runner' into 'develop'
• dda93fe3 - added table reporting to latex and markdown
• ca670c74 - try to fix the umlaut encoding problem
• 3b33060e - small refac and updated docu
• 038beaf2 - Merge branch 'lukas_issue090_feat_extract-station-sample-sizes' into 'develop'
• e6e244cd - new time tracking wrapper to use as decorator
• dfdea269 - implemented new abstract plot class including unified save method, also use...
• b90b36f4 - added availability plot
• 926c3203 - removed wrong save command
• 010f38cb - Merge branch 'lukas_issue103_feat_data-series-summary-plot' into 'develop'
• 33433be3 - added summary and combined Gantt plot, also name of summary can be set from outside
• 45ce6195 - PlotAvailability is now part of the plot list functionality
• 9bf9966b - legend on top
• 243ca29e - Merge branch 'lukas_issue103_feat_data-series-summary-plot' into 'develop'
• aac0755c - remove comments from inception_model.py
• 7553788c - Merge branch 'felix_issue111_refac_remove-comments' into 'develop'
• a19c4fe6 - Merge branch 'develop' into release_v0.9.0

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unmarked as a Work In Progress

merged

mentioned in commit e945b365