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machine-learning
MLAir
Commits
4d77f144
Commit
4d77f144
authored
5 years ago
by
Felix Kleinert
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add stuff for hdfml
parent
42755f31
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3 merge requests
!125
Release v0.10.0
,
!124
Update Master to new version v0.10.0
,
!97
Felix issue106 hpc modules for juwels
Pipeline
#35683
passed with warnings
5 years ago
Stage: test
Stage: pages
Stage: deploy
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HPC_setup/mlt_modules_hdfml.sh
+23
-0
23 additions, 0 deletions
HPC_setup/mlt_modules_hdfml.sh
HPC_setup/setup_venv_hdfml.sh
+29
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29 additions, 0 deletions
HPC_setup/setup_venv_hdfml.sh
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52 additions
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HPC_setup/mlt_modules_hdfml.sh
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+
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4d77f144
#!/bin/bash
# __author__ = Felix Kleinert
# __date__ = '2020-04-29'
# This script loads the required modules for mlt which are available on HDFML.
# Note that some other packages have to be installed into a venv (see setup_venv_hdfml.sh).
module
--force
purge
module use
$OTHERSTAGES
ml Stages/2019a
ml GCCcore/.8.3.0
ml Python/3.6.8
ml TensorFlow/1.13.1-GPU-Python-3.6.8
ml Keras/2.2.4-GPU-Python-3.6.8
ml SciPy-Stack/2019a-Python-3.6.8
ml dask/1.1.5-Python-3.6.8
ml GEOS/3.7.1-Python-3.6.8
ml Graphviz/2.40.1
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HPC_setup/setup_venv_hdfml.sh
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4d77f144
#!/bin/bash
# __author__ = Felix Kleinert
# __date__ = '2020-04-06'
# This script creates a virtual env which contains all modules which are not available via slrum/easybuild (see mlt_modules_hdfml.sh)
# load existing modules
source
mlt_modules_hdfml.sh
# create venv
python3
-m
venv ../venv_hdfml
source
../venv_hdfml/bin/activate
# export path for side-packages
export
PYTHONPATH
=
${
PWD
}
/../venv_hdfml/lib/python3.6/site-packages:
${
PYTHONPATH
}
pip
install
-r
requirements_HDFML_outcommented.txt
pip
install
--ignore-installed
matplotlib
==
3.2.0
pip
install
--ignore-installed
pandas
==
1.0.1
# see wiki on hdfml for information oh h5py:
# https://gitlab.version.fz-juelich.de/haf/Wiki/-/wikis/HDF-ML%20System
export
CC
=
mpicc
export
HDF5_MPI
=
"ON"
pip
install
--no-binary
=
h5py h5py
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