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Commit 4d77f144 authored by Felix Kleinert's avatar Felix Kleinert
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add stuff for hdfml

parent 42755f31
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3 merge requests!125Release v0.10.0,!124Update Master to new version v0.10.0,!97Felix issue106 hpc modules for juwels
Pipeline #35683 passed with warnings
#!/bin/bash
# __author__ = Felix Kleinert
# __date__ = '2020-04-29'
# This script loads the required modules for mlt which are available on HDFML.
# Note that some other packages have to be installed into a venv (see setup_venv_hdfml.sh).
module --force purge
module use $OTHERSTAGES
ml Stages/2019a
ml GCCcore/.8.3.0
ml Python/3.6.8
ml TensorFlow/1.13.1-GPU-Python-3.6.8
ml Keras/2.2.4-GPU-Python-3.6.8
ml SciPy-Stack/2019a-Python-3.6.8
ml dask/1.1.5-Python-3.6.8
ml GEOS/3.7.1-Python-3.6.8
ml Graphviz/2.40.1
#!/bin/bash
# __author__ = Felix Kleinert
# __date__ = '2020-04-06'
# This script creates a virtual env which contains all modules which are not available via slrum/easybuild (see mlt_modules_hdfml.sh)
# load existing modules
source mlt_modules_hdfml.sh
# create venv
python3 -m venv ../venv_hdfml
source ../venv_hdfml/bin/activate
# export path for side-packages
export PYTHONPATH=${PWD}/../venv_hdfml/lib/python3.6/site-packages:${PYTHONPATH}
pip install -r requirements_HDFML_outcommented.txt
pip install --ignore-installed matplotlib==3.2.0
pip install --ignore-installed pandas==1.0.1
# see wiki on hdfml for information oh h5py:
# https://gitlab.version.fz-juelich.de/haf/Wiki/-/wikis/HDF-ML%20System
export CC=mpicc
export HDF5_MPI="ON"
pip install --no-binary=h5py h5py
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